pycom15g13890

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015824
Physical Location & Seq
Reverse (-)
9471441 .. 9473624
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
ATGATTGGAGTAGGGAAGATCAAGCAATACTCCAATGTCCTCGACAAGCCCCTCAGCAAGGGCAAACAGGAGGTTAGTTTGAGTGCGTTTGCGTTCTTGTTTTCGGAGCTCGTTCAGTACAATCAGACGCAGGTTGACAACATTGCGGAGTTAGAACGAAGGCTGGAGGATGCAGGATATGCTGTTGGGGCTCGAGTTCTGGAGCTTCTTTGCCATAGGGATAAGGGAAACAGGAGGGAGACACGGTTGCTGGGTATCCTGTCTTTTGTGCATAGCACGGTGTGGAAGGTGTTATTTGGAAAGGTAGCTGACTCCCTTGAGAAAGGCACTGAACATGAAGATGAGTACATGATTAGTGAGAAGGAGCTCCTTGTGAACAGATTTATTTCGATTCCAAAAGACATGGGAACCTTTAATTGTGGAGCATTTGTCGCTGGAATTGTAAGGGGAGTTTTGGATGGTGCTGGTTTCCCAGCTGTGGTAACAGCGCATTTTGTACCAGTGGAGGGACAGCAACGGCCTCGAACAACCATTTTAATTAAGTTTGCTGAAGAGGTACTAAGAAGAGAAGCAAGGTTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

195

Amino Acids

21.67

Weight (kDa)

7.78

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 30 - 182 4e-47 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015824)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58030
fragaria_vesca FvH4_1g01170 FvH4_1g01170
malus_domestica MD02G1009800.v1.1
prunus_persica Prupe.7G260200_v2.0.a1 Prupe.7G260200_v2.0.a1
pyrus_communis pycom02g00850 pycom15g13890
rosa_chinensis RchiOBHm_Chr2g0085961
rosa_laevigata RLG00000015730
rosa_multiflora Rmu_ssc0000355.1_g000026
rosa_roxburghii Rroxscaffold_2G00154890
rosa_rugosa Rorug01G0464700
rosa_samantha Rh2AG013900
rosa_wichuraiana Rw2G001230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 121
AciI CCGC 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 570
AdeI CACNNNGTG 1 cut(s) 282
AfaI GTAC 4 cut(s) 119, 347, 498, 558
AfiI CCNNNNNNNGG 3 cut(s) 58, 478, 506
AluBI AGCT 5 cut(s) 109, 205, 308, 367, 476
AluI AGCT 5 cut(s) 109, 205, 308, 367, 476
Alw21I GWGCWC 2 cut(s) 111, 369
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 518
AspLEI GCGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 192
BanII GRGCYC 3 cut(s) 111, 193, 369
Bbv12I GWGCWC 2 cut(s) 111, 369
BbvCI CCTCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 452
BceAI ACGGC 1 cut(s) 533
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciVI GTATCC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 121
BfuI GTATCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 2 cut(s) 185, 221
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 338
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 478, 506
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 141
BseGI GGATG 2 cut(s) 175, 463
BseLI CCNNNNNNNGG 3 cut(s) 58, 478, 506
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 500
BseYI CCCAGC 2 cut(s) 250, 472
BshFI GGCC 1 cut(s) 520
BsiHKAI GWGCWC 2 cut(s) 111, 369
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 3 cut(s) 58, 478, 506
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 1 cut(s) 520
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 111, 193, 369
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 500
BssMI GATC 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 246, 280
Bst6I CTCTTC 2 cut(s) 546, 559
BstAPI GCANNNNNTGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 53, 560
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 175, 463
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 179, 188, 431
BsuI GTATCC 1 cut(s) 266
BsuRI GGCC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 175, 463
BtsIMutI CAGTG 2 cut(s) 327, 507
BveI ACCTGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 490
CseI GACGC 1 cut(s) 136
Csp6I GTAC 4 cut(s) 118, 346, 497, 557
CviAII CATG 3 cut(s) 335, 349, 403
CviJI RGCY 9 cut(s) 49, 109, 163, 191, 205, 308, 367, 476, 520
CviKI_1 RGCY 9 cut(s) 49, 109, 163, 191, 205, 308, 367, 476, 520
CviQI GTAC 4 cut(s) 118, 346, 497, 557
DdeI CTNAG 2 cut(s) 53, 560
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 546, 559
EarI CTCTTC 2 cut(s) 546, 559
Ecl136II GAGCTC 2 cut(s) 109, 367
Eco24I GRGCYC 3 cut(s) 111, 193, 369
Eco53kI GAGCTC 2 cut(s) 109, 367
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 2 cut(s) 109, 367
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoT38I GRGCYC 3 cut(s) 111, 193, 369
FaeI CATG 3 cut(s) 338, 352, 406
FaiI YATR 6 cut(s) 180, 216, 273, 336, 350, 404
FaqI GGGAC 1 cut(s) 522
FatI CATG 3 cut(s) 334, 348, 402
FokI GGATG 2 cut(s) 182, 470
FriOI GRGCYC 3 cut(s) 111, 193, 369
GlaI GCGC 1 cut(s) 489
GsaI CCCAGC 2 cut(s) 254, 476
GsuI CTGGAG 2 cut(s) 185, 221
HaeIII GGCC 1 cut(s) 520
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 490
Hin1II CATG 3 cut(s) 338, 352, 406
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 2 cut(s) 311, 391
Hpy166II GTNNAC 2 cut(s) 136, 376
Hpy188I TCNGA 2 cut(s) 106, 126
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 2 cut(s) 136, 376
HpyAV CCTTC 3 cut(s) 153, 280, 355
HpyCH4III ACNGT 2 cut(s) 246, 280
HpyCH4V TGCA 2 cut(s) 173, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 188, 431
HpyF3I CTNAG 2 cut(s) 53, 560
Hsp92II CATG 3 cut(s) 338, 352, 406
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 5 cut(s) 106, 202, 364, 372, 422
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 481
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 4 cut(s) 28, 350, 563, 576
MhlI GDGCHC 3 cut(s) 111, 193, 369
MluCI AATT 3 cut(s) 415, 438, 537
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 8 cut(s) 50, 62, 64, 160, 228, 499, 531, 547
MseI TTAA 3 cut(s) 414, 536, 540
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 179, 188, 431
NdeII GATC 1 cut(s) 18
NlaIII CATG 3 cut(s) 338, 352, 406
NlaIV GGNNCC 1 cut(s) 409
PacI TTAATTAA 1 cut(s) 540
PaeR7I CTCGAG 1 cut(s) 192
PfeI GAWTC 1 cut(s) 391
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp124BI GAGCTC 2 cut(s) 111, 369
PspFI CCCAGC 2 cut(s) 250, 472
PspN4I GGNNCC 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 192
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 4 cut(s) 119, 347, 498, 558
RsaNI GTAC 4 cut(s) 118, 346, 497, 557
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 2 cut(s) 111, 369
SaqAI TTAA 3 cut(s) 414, 536, 540
Sau3AI GATC 1 cut(s) 18
SchI GAGTC 1 cut(s) 305
SduI GDGCHC 3 cut(s) 111, 193, 369
SfaNI GCATC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 192
SlaI CTCGAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 192, 317
SmoI CTYRAG 2 cut(s) 192, 317
Sse9I AATT 3 cut(s) 415, 438, 537
SsiI CCGC 1 cut(s) 146
SstI GAGCTC 2 cut(s) 111, 369
TaaI ACNGT 2 cut(s) 246, 280
TaqI TCGA 4 cut(s) 42, 193, 389, 523
TasI AATT 3 cut(s) 415, 438, 537
TatI WGTACW 2 cut(s) 117, 345
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 3 cut(s) 414, 536, 540
Tru9I TTAA 3 cut(s) 414, 536, 540
TscAI CASTG 2 cut(s) 334, 507
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 2 cut(s) 334, 507
XagI CCTNNNNNAGG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.