pycom15g14400

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
9826166 .. 9828545
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g14400.1

Sequence Viewer

Length: 1782 bp
ATGACGGTTGCAATAATACGAAAACGCAAAAATGTTGAAGAAAAGTATAACTTTTATTTTACGTTTTCAGACCCTCCCTCAACGGCTAGTTTCCTAGTGACCGTTTTCCCGTCTCCCAAAATTCAAAATCTGAACCCACCGTTAATCTTCTCCACATACCGCAATTCCCGGAAATATTTTTCAATTGTCAAACAACACTCGCAAACAAAAACCAAAATTCAAATCCAAACTCAAACTCTGGCACCTTCCCAAATTCGATCTCTGTTAAACCCATTTGGCAATTCGAATCAAGAACCCAGAATTTCAAAAATGGTGTATTCGTACGCGCCCACATACTACTCCACTCTCCACGACTCGATGACCTCCCTGTGCAAGTCCATTCTTCCCTTAGGCTTCAAGAAGCGGCGGTTGCCAGCGGCGGAGCAGAAGCTTTCGAAGCTGCAGTCGGATAACCTCAAGTGGCAGCAGGACTCTTTCCACCAGATGATGAACTTGATGGGTCTACACAAAGAAGGGATCTTGGCTGAGACCGAGGTCTCCGCTTTCCGATTGCATTTGCTCGAAACCCTCGTCGCCTCTCCAGTGGTGGAGCACGAACAGCCGGTTATTCTGAGGGACAAGTTGCTGTTCTTGCAGCGATTAGCAGCTCAGGGAGCTGAGGTCGAGGCTAAAGATGTAATCGCTTCAGGATCGCTGCCAGCGAAGAACCTGAGAGAGAATGCAGATCAAGAGCAGTGGTCTGAAATTGACTTGAAGGACGAGAAATGCTTGCTAACGAAAGACAAAGGGAGTTCAAATTCGAAGAACAAATTGAAGCACAGCTCGGCAGTGAAGCAAATCAAAGGGGCAGCTTCGGTGTTGGGATTTGTATCACCTTTCAAACAAGGGAAAAACAGGGGAGAAAAGAGCATATTCGATCTGCCCGACTCGTCCAAATTTTCTTCAACCAGCTCTTCTAAGCATGAAGCAGGAGATCAATCGTCGATTCTCATGCCAGAAAGCTTGCCACAGGTTCCGATGAAAGAGAGTGGGAGTGCAGATCGAACGAGGAGGAAGCCGTTTAGGAATCTGTTTCAGAGAGAACAGAGAGAGGGACAGGAGGATCATGGCCACGAAAATGAACAAACACCTTCGAAATCAGCGAAAAAGCAATGGGGTTTTGATGGATTCAAGAAGTGGAAGAGGAGTGACTCGGAAGAGAATGAGACAACTCCGTTGCCGCTAAACGAAAGATCAGATAGTGAGGTTCACCTGAAGCTTGTCCCAAGCCCCATGGGTGAAGGGCCAGACACTAAGCTCATAAAAAGGAAGCTGCTCTCGGATGGTTCTCCTTCTGATTTCTTCATTGACAAGGTTGTAGGGGAGAAGATAAAGAAGGAACTGTCAAGAATTCAGACAGAGCTTTGCGCTTCAAATCCAAATCTTCGATTCACGTCGTGGTGTGATCGGTATGGAGACGTTGTTCTGGACGTGGTGAGGAAAGAATTCAAGGAGCATGTTGGGGAGATGGAGAGCTTGAGAAATGCAGCAAGAGAGAAACACGGTATCCACTCAGCGCGATGGGTTACATTCCAAGATGACGAGGAGAATTGTCACCCAAATCTGTTTGCTCCGCCGCATGACAACAACCACAATTACACCTCAAAGTTCCATGAAACCAATCCATTCTGTGATGATCACCTTTACACCACCCCTAGGAAGCTGAGATCGAAACCGGAAGCTTACACACAAGAGCAGAATCAGAATCAGAATCCCTTTTGGATCCCGGGGCATGGCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

594

Amino Acids

67.74

Weight (kDa)

9.1

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013577)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 502
AccII CGCG 2 cut(s) 326, 1558
AciI CCGC 9 cut(s) 160, 403, 406, 416, 419, 540, 1220, 1613, 1616
AclWI GGATC 5 cut(s) 524, 697, 1110, 1756, 1769
AcoI YGGCCR 1 cut(s) 1108
AcsI RAATTY 8 cut(s) 120, 216, 252, 300, 796, 935, 1389, 1484
AcuI CTGAAG 2 cut(s) 669, 1274
AdeI CACNNNGTG 1 cut(s) 1437
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 1695, 1772
AjiI CACGTC 2 cut(s) 1434, 1471
AloI GAACNNNNNNTCC 2 cut(s) 1446, 1478
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 5 cut(s) 117, 521, 541, 1199, 1449
AlwI GGATC 5 cut(s) 524, 697, 1110, 1756, 1769
Ama87I CYCGRG 1 cut(s) 1765
AoxI GGCC 2 cut(s) 1108, 1283
ApeKI GCWGC 8 cut(s) 439, 463, 634, 644, 694, 848, 1312, 1526
ApoI RAATTY 8 cut(s) 120, 216, 252, 300, 796, 935, 1389, 1484
ArsI GACNNNNNNTTYG 4 cut(s) 428, 460, 555, 587
Asp700I GAANNNNTTC 1 cut(s) 1484
AspA2I CCTAGG 1 cut(s) 1694
AspLEI GCGC 3 cut(s) 328, 1409, 1558
AspS9I GGNCC 1 cut(s) 1283
AsuC2I CCSGG 3 cut(s) 169, 1766, 1767
AsuHPI GGTGA 6 cut(s) 864, 1241, 1289, 1486, 1586, 1670
AsuII TTCGAA 4 cut(s) 284, 434, 800, 1133
AvaI CYCGRG 1 cut(s) 1765
AvrII CCTAGG 1 cut(s) 1694
AxyI CCTNAGG 1 cut(s) 388
BalI TGGCCA 1 cut(s) 1110
BamHI GGATCC 1 cut(s) 1761
BanI GGYRCC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 594
BbvCI CCTCAGC 1 cut(s) 657
BbvI GCAGC 8 cut(s) 426, 475, 646, 656, 681, 860, 1299, 1538
BccI CCATC 5 cut(s) 490, 1157, 1316, 1501, 1554
BceAI ACGGC 2 cut(s) 99, 1042
BcgI CGANNNNNNTGC 2 cut(s) 973, 1007
BciVI GTATCC 1 cut(s) 1556
BclI TGATCA 1 cut(s) 1675
BcnI CCSGG 3 cut(s) 169, 1766, 1767
BcoDI GTCTC 5 cut(s) 117, 521, 541, 1199, 1449
BfaI CTAG 3 cut(s) 87, 95, 1695
BfmI CTRYAG 1 cut(s) 440
BfuI GTATCC 1 cut(s) 1556
BlnI CCTAGG 1 cut(s) 1694
Bme1390I CCNGG 3 cut(s) 169, 1766, 1767
BmeT110I CYCGRG 1 cut(s) 1765
BmgBI CACGTC 2 cut(s) 1434, 1471
BmgT120I GGNCC 1 cut(s) 1283
BmiI GGNNCC 3 cut(s) 243, 1014, 1763
BmrFI CCNGG 3 cut(s) 169, 1766, 1767
BoxI GACNNNNGTC 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 2 cut(s) 648, 657
Bpu14I TTCGAA 4 cut(s) 284, 434, 800, 1133
BpuEI CTTGAG 2 cut(s) 440, 1537
BpuMI CCSGG 3 cut(s) 169, 1766, 1767
BsaBI GATNNNNATC 1 cut(s) 868
BsaI GGTCTC 2 cut(s) 521, 541
BsaJI CCNNGG 5 cut(s) 531, 1272, 1694, 1765, 1766
BsaWI WCCGGW 1 cut(s) 1714
BsaXI ACNNNNNCTCC 4 cut(s) 645, 675, 1446, 1476
Bsc4I CCNNNNNNNGG 2 cut(s) 1695, 1772
Bse118I RCCGGY 1 cut(s) 601
Bse1I ACTGG 1 cut(s) 581
Bse21I CCTNAGG 1 cut(s) 388
Bse3DI GCAATG 1 cut(s) 1157
Bse8I GATNNNNATC 1 cut(s) 868
BseDI CCNNGG 5 cut(s) 531, 1272, 1694, 1765, 1766
BseGI GGATG 1 cut(s) 1327
BseJI GATNNNNATC 1 cut(s) 868
BseLI CCNNNNNNNGG 2 cut(s) 1695, 1772
BseMI GCAATG 1 cut(s) 1157
BseMII CTCAG 7 cut(s) 516, 602, 648, 662, 701, 1566, 1694
BseNI ACTGG 1 cut(s) 581
BseRI GAGGAG 3 cut(s) 1063, 1198, 1598
BseXI GCAGC 8 cut(s) 426, 475, 646, 656, 681, 860, 1299, 1538
BsgI GTGCAG 1 cut(s) 1056
Bsh1236I CGCG 2 cut(s) 326, 1558
BshFI GGCC 2 cut(s) 1110, 1285
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 1765
BsiSI CCGG 4 cut(s) 169, 602, 1715, 1766
BsiWI CGTACG 1 cut(s) 321
BslFI GGGAC 3 cut(s) 629, 1107, 1247
BslI CCNNNNNNNGG 2 cut(s) 1695, 1772
BsmAI GTCTC 5 cut(s) 117, 521, 541, 1199, 1449
BsmBI CGTCTC 2 cut(s) 117, 1449
BsmFI GGGAC 3 cut(s) 629, 1107, 1247
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 2 cut(s) 1110, 1285
Bso31I GGTCTC 2 cut(s) 521, 541
BsoBI CYCGRG 1 cut(s) 1765
Bsp119I TTCGAA 4 cut(s) 284, 434, 800, 1133
Bsp1286I GDGCHC 1 cut(s) 594
Bsp19I CCATGG 1 cut(s) 1272
BspACI CCGC 9 cut(s) 160, 403, 406, 416, 419, 540, 1220, 1613, 1616
BspANI GGCC 2 cut(s) 1110, 1285
BspCNI CTCAG 7 cut(s) 517, 603, 649, 661, 702, 1565, 1695
BspFNI CGCG 2 cut(s) 326, 1558
BspLI GGNNCC 3 cut(s) 243, 1014, 1763
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 5 cut(s) 524, 697, 1110, 1756, 1769
BspQI GCTCTTC 1 cut(s) 958
BspT104I TTCGAA 4 cut(s) 284, 434, 800, 1133
BspT107I GGYRCC 1 cut(s) 241
BspTNI GGTCTC 2 cut(s) 521, 541
BsrDI GCAATG 1 cut(s) 1157
BsrFI RCCGGY 1 cut(s) 601
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 5 cut(s) 531, 1272, 1694, 1765, 1766
BssT1I CCWWGG 2 cut(s) 1272, 1694
Bst4CI ACNGT 5 cut(s) 7, 103, 141, 1383, 1544
Bst6I CTCTTC 3 cut(s) 958, 1175, 1191
BstBI TTCGAA 4 cut(s) 284, 434, 800, 1133
BstC8I GCNNGC 4 cut(s) 414, 699, 770, 1004
BstDSI CCRYGG 1 cut(s) 1272
BstF5I GGATG 1 cut(s) 1327
BstFNI CGCG 2 cut(s) 326, 1558
BstHHI GCGC 3 cut(s) 328, 1409, 1558
BstMAI GTCTC 5 cut(s) 117, 521, 541, 1199, 1449
BstMWI GCNNNNNNNGC 5 cut(s) 409, 436, 598, 631, 653
BstNSI RCATGY 1 cut(s) 1499
BstPAI GACNNNNGTC 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 167, 1764, 1765
BstSFI CTRYAG 1 cut(s) 440
BstUI CGCG 2 cut(s) 326, 1558
BstV1I GCAGC 8 cut(s) 426, 475, 646, 656, 681, 860, 1299, 1538
BstX2I RGATCY 2 cut(s) 516, 1761
BstYI RGATCY 2 cut(s) 516, 1761
Bsu36I CCTNAGG 1 cut(s) 388
BsuI GTATCC 1 cut(s) 1556
BsuRI GGCC 2 cut(s) 1110, 1285
BtgI CCRYGG 1 cut(s) 1272
BtgZI GCGATG 1 cut(s) 1573
BtrI CACGTC 2 cut(s) 1434, 1471
BtsCI GGATG 1 cut(s) 1327
BtsI GCAGTG 2 cut(s) 740, 834
BtsIMutI CAGTG 3 cut(s) 588, 740, 834
Cac8I GCNNGC 4 cut(s) 414, 699, 770, 1004
CfoI GCGC 3 cut(s) 328, 1409, 1558
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 1283
Cfr9I CCCGGG 1 cut(s) 1765
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 716, 751
CviAII CATG 8 cut(s) 962, 991, 1106, 1273, 1496, 1619, 1652, 1772
CviQI GTAC 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 1437
EaeI YGGCCR 1 cut(s) 1108
Eam1104I CTCTTC 3 cut(s) 958, 1175, 1191
EarI CTCTTC 3 cut(s) 958, 1175, 1191
EciI GGCGGA 2 cut(s) 434, 1602
Eco130I CCWWGG 2 cut(s) 1272, 1694
Eco31I GGTCTC 2 cut(s) 521, 541
Eco57I CTGAAG 2 cut(s) 669, 1274
Eco81I CCTNAGG 1 cut(s) 388
Eco88I CYCGRG 1 cut(s) 1765
EcoRI GAATTC 2 cut(s) 1389, 1484
EcoT14I CCWWGG 2 cut(s) 1272, 1694
ErhI CCWWGG 2 cut(s) 1272, 1694
Esp3I CGTCTC 2 cut(s) 117, 1449
FaeI CATG 8 cut(s) 965, 994, 1109, 1276, 1499, 1622, 1655, 1775
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 3 cut(s) 629, 1107, 1247
FatI CATG 8 cut(s) 961, 990, 1105, 1272, 1495, 1618, 1651, 1771
FbaI TGATCA 1 cut(s) 1675
FblI GTMKAC 1 cut(s) 502
FokI GGATG 1 cut(s) 1334
FspBI CTAG 3 cut(s) 87, 95, 1695
GlaI GCGC 3 cut(s) 327, 1408, 1557
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 2 cut(s) 1110, 1285
HapII CCGG 4 cut(s) 169, 602, 1715, 1766
HhaI GCGC 3 cut(s) 328, 1409, 1558
Hin1II CATG 8 cut(s) 965, 994, 1109, 1276, 1499, 1622, 1655, 1775
Hin6I GCGC 3 cut(s) 326, 1407, 1556
HinP1I GCGC 3 cut(s) 326, 1407, 1556
HindIII AAGCTT 4 cut(s) 428, 1000, 1256, 1719
HpaII CCGG 4 cut(s) 169, 602, 1715, 1766
HphI GGTGA 6 cut(s) 864, 1241, 1289, 1486, 1586, 1670
Hpy166II GTNNAC 2 cut(s) 503, 1249
Hpy188III TCNNGA 7 cut(s) 290, 397, 687, 728, 1171, 1386, 1466
Hpy8I GTNNAC 2 cut(s) 503, 1249
Hpy99I CGWCG 3 cut(s) 575, 985, 1438
HpyAV CCTTC 7 cut(s) 255, 506, 748, 1140, 1274, 1341, 1369
HpyCH4III ACNGT 5 cut(s) 7, 103, 141, 1383, 1544
HpyCH4IV ACGT 4 cut(s) 62, 1433, 1458, 1470
HpyCH4V TGCA 8 cut(s) 11, 372, 442, 553, 634, 722, 1037, 1526
HpyF10VI GCNNNNNNNGC 5 cut(s) 409, 436, 598, 631, 653
HpySE526I ACGT 4 cut(s) 62, 1433, 1458, 1470
Hsp92II CATG 8 cut(s) 965, 994, 1109, 1276, 1499, 1622, 1655, 1775
HspAI GCGC 3 cut(s) 326, 1407, 1556
Ksp22I TGATCA 1 cut(s) 1675
LguI GCTCTTC 1 cut(s) 958
LmnI GCTCC 5 cut(s) 421, 589, 653, 1492, 1615
Lsp1109I GCAGC 8 cut(s) 426, 475, 646, 656, 681, 860, 1299, 1538
MaeI CTAG 3 cut(s) 87, 95, 1695
MaeII ACGT 4 cut(s) 62, 1433, 1458, 1470
MaeIII GTNAC 4 cut(s) 97, 1187, 1564, 1592
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 2 cut(s) 516, 1761
MhlI GDGCHC 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 1110
MluNI TGGCCA 1 cut(s) 1110
MlyI GAGTC 4 cut(s) 347, 464, 920, 1184
MmeI TCCRAC 1 cut(s) 426
Mox20I TGGCCA 1 cut(s) 1110
MroXI GAANNNNTTC 1 cut(s) 1484
MscI TGGCCA 1 cut(s) 1110
MseI TTAA 2 cut(s) 143, 266
MslI CAYNNNNRTG 1 cut(s) 1116
Msp20I TGGCCA 1 cut(s) 1110
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 4 cut(s) 169, 602, 1715, 1766
MspR9I CCNGG 3 cut(s) 169, 1766, 1767
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 724
MvnI CGCG 2 cut(s) 326, 1558
MwoI GCNNNNNNNGC 5 cut(s) 409, 436, 598, 631, 653
NciI CCSGG 3 cut(s) 169, 1766, 1767
NcoI CCATGG 1 cut(s) 1272
NlaIII CATG 8 cut(s) 965, 994, 1109, 1276, 1499, 1622, 1655, 1775
NlaIV GGNNCC 3 cut(s) 243, 1014, 1763
NmeAIII GCCGAG 1 cut(s) 803
NmuCI GTSAC 3 cut(s) 97, 1187, 1592
NspI RCATGY 1 cut(s) 1499
NspV TTCGAA 4 cut(s) 284, 434, 800, 1133
PciSI GCTCTTC 1 cut(s) 958
PcsI WCGNNNNNNNCGW 4 cut(s) 567, 698, 921, 1139
PctI GAATGC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 1484
PfeI GAWTC 8 cut(s) 286, 985, 1066, 1167, 1428, 1738, 1744, 1750
Pfl23II CGTACG 1 cut(s) 321
PfoI TCCNGGA 1 cut(s) 167
PleI GAGTC 4 cut(s) 347, 464, 920, 1184
PpsI GAGTC 4 cut(s) 347, 464, 920, 1184
PshAI GACNNNNGTC 1 cut(s) 533
PspLI CGTACG 1 cut(s) 321
PspN4I GGNNCC 3 cut(s) 243, 1014, 1763
PspPI GGNCC 1 cut(s) 1283
PstI CTGCAG 1 cut(s) 444
PsuI RGATCY 2 cut(s) 516, 1761
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 1116
SapI GCTCTTC 1 cut(s) 958
SaqAI TTAA 2 cut(s) 143, 266
Sau96I GGNCC 1 cut(s) 1283
SchI GAGTC 4 cut(s) 347, 464, 920, 1184
ScrFI CCNGG 3 cut(s) 169, 1766, 1767
SduI GDGCHC 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 440
SfuI TTCGAA 4 cut(s) 284, 434, 800, 1133
SmaI CCCGGG 1 cut(s) 1767
SmiMI CAYNNNNRTG 1 cut(s) 1116
SmlI CTYRAG 2 cut(s) 455, 1516
SmoI CTYRAG 2 cut(s) 455, 1516
SsiI CCGC 9 cut(s) 160, 403, 406, 416, 419, 540, 1220, 1613, 1616
SspI AATATT 1 cut(s) 176
SspMI CTAG 3 cut(s) 87, 95, 1695
StyD4I CCNGG 3 cut(s) 167, 1764, 1765
StyI CCWWGG 2 cut(s) 1272, 1694
TaaI ACNGT 5 cut(s) 7, 103, 141, 1383, 1544
TaiI ACGT 4 cut(s) 65, 1436, 1461, 1473
TaqII GACCGA 1 cut(s) 545
TauI GCSGC 4 cut(s) 406, 419, 1222, 1618
TfiI GAWTC 8 cut(s) 286, 985, 1066, 1167, 1428, 1738, 1744, 1750
Tru1I TTAA 2 cut(s) 143, 266
Tru9I TTAA 2 cut(s) 143, 266
TscAI CASTG 3 cut(s) 588, 740, 834
TseFI GTSAC 3 cut(s) 97, 1187, 1592
TseI GCWGC 8 cut(s) 439, 463, 634, 644, 694, 848, 1312, 1526
Tsp45I GTSAC 3 cut(s) 97, 1187, 1592
TspDTI ATGAA 6 cut(s) 503, 978, 1034, 1134, 1333, 1668
TspGWI ACGGA 1 cut(s) 1203
TspMI CCCGGG 1 cut(s) 1765
TspRI CASTG 3 cut(s) 588, 740, 834
XapI RAATTY 8 cut(s) 120, 216, 252, 300, 796, 935, 1389, 1484
XceI RCATGY 1 cut(s) 1499
XmaI CCCGGG 1 cut(s) 1765
XmaJI CCTAGG 1 cut(s) 1694
XmiI GTMKAC 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 1484
XspI CTAG 3 cut(s) 87, 95, 1695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.