Rmu_sc0004626.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004626.1
OG0013577
Physical Location & Seq
Reverse (-)
6298 .. 8127
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004626.1_g000002.1.cds

Sequence Viewer

Length: 1398 bp
atggtgtactcttacgcacccacatactactcctctctacatgagtccgtcacctctttatgcaagaccatccttcccttcagcttcaagaaacgccgcttgccggccgcggaacacaagctgtcgaagcttcagtctgataatctcaaatggcagcaggactctttccaccagattctcaacttgatggatgagtaccattcttcgaaaaggccgctgctgcagagattggcagtccaaggagctgagattgaggccagagatgtaattgttgcaggggcaccacttaatgatccaaaagagaatgcagaggaggagtggtctgtgattgacttgaaggatgacaaaagcttgatgaacaaagagggttcgaattcgaagagcaacaaagggaagcatggctcggcactgaagcagattaaaggagcagcttcagttttggggtttgtgtcaccttacaaacaggggaagaacagagaagagaggagcattttcgatttggctaacaactctaatcatgaaacaagctcaattctcatgccagagagcttgcctcctgtgaaagaaagtggtagctcagataggacgaagaggaaaccgtttaggaatttgtttcagagagaacagaaagagggaaatggggatgagaattgtgtcgagcaagaacaaacaccttcgaaatcagcgaaaaagaaatgggggtttgatggattgaagaagtggaagaggagtgaggtggaggatgagacaactcctctgcctcttaatgagagatcagatagtgaagttcatatgaagcttgtggcaagtcccatgggtgaaggaccagacactaagcttatcaagaggaagctgctgtcagatggttctccttctgattttttcattgataaggttgtaggggacaagataaagaaggagctgtcgagaattcagaccgagctttgcacatcaaatccaaatctcaaattttcgaatgaccaaattgaagcaatttcaactaagcttccagtagacaaggctgagctaaagaagtttttccccaagtcgtggtgtgatcgctacggtgatgtggtcttggatgtggtgaagaaagaattcaaggaccatgttggggagatggagagcttgaggaatgcagctagagagaaacatggcatgaactcagcgcgatggacaacattccaagacgacgatgaaaattgtcacccgaatctatttgcaacccgagatcattcataccatagcagtggcacttcaaagttccatgaaaccaatcctttctgtgatgatcacatcactgggaatggaagcaatgctagcaagctgggatttaaaccagcttttgcccaagaccagaaccagaaccccttctgggtccctggacatggctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

465

Amino Acids

52.63

Weight (kDa)

8.04

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013577)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01760 FvH4_1g01760 FvH4_1g01760
malus_domestica MD02G1013300.v1.1 MD15G1160100.v1.1
prunus_persica Prupe.7G255100_v2.0.a1
pyrus_communis pycom02g01240 pycom15g14400
rosa_chinensis RchiOBHm_Chr2g0086721
rosa_laevigata RLG00000015785
rosa_multiflora Rmu_sc0004626.1_g000002
rosa_roxburghii Rroxscaffold_2G00154250
rosa_rugosa Rorug01G0469200
rosa_samantha Rh2AG021200 Rh2BG021100 Rh2CG022000 Rh2DG021800
rosa_wichuraiana Rw2G001720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 1050
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 2 cut(s) 110, 1171
AciI CCGC 4 cut(s) 97, 108, 110, 215
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 5 cut(s) 373, 607, 930, 968, 1097
AcuI CTGAAG 4 cut(s) 64, 116, 417, 431
AfaI GTAC 2 cut(s) 8, 197
AfiI CCNNNNNNNGG 5 cut(s) 103, 1050, 1114, 1375, 1388
AgsI TTSAA 7 cut(s) 88, 337, 715, 989, 999, 1102, 1260
AjnI CCWGG 1 cut(s) 1381
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 1227
AoxI GGCC 3 cut(s) 105, 212, 255
ApeKI GCWGC 6 cut(s) 154, 217, 220, 428, 853, 1139
ApoI RAATTY 5 cut(s) 373, 607, 930, 968, 1097
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 3 cut(s) 1037, 1097, 1370
AspLEI GCGC 1 cut(s) 1171
AspS9I GGNCC 3 cut(s) 824, 1105, 1378
AsuHPI GGTGA 6 cut(s) 43, 444, 830, 1079, 1099, 1199
AsuII TTCGAA 5 cut(s) 206, 371, 377, 677, 974
AsuNHI GCTAGC 1 cut(s) 1319
AvaI CYCGRG 1 cut(s) 1227
AvaII GGWCC 3 cut(s) 824, 1105, 1378
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 280
BbvI GCAGC 6 cut(s) 166, 204, 207, 440, 840, 1151
BccI CCATC 6 cut(s) 77, 181, 701, 857, 1114, 1167
BciT130I CCWGG 1 cut(s) 1383
BclI TGATCA 1 cut(s) 1291
BcoDI GTCTC 1 cut(s) 740
BfaI CTAG 2 cut(s) 1143, 1320
BfmI CTRYAG 1 cut(s) 221
BisI GCNGC 9 cut(s) 97, 108, 155, 215, 218, 221, 429, 854, 1140
BlpI GCTNAGC 1 cut(s) 1023
BlsI GCNGC 9 cut(s) 98, 109, 156, 216, 219, 222, 430, 855, 1141
Bme1390I CCNGG 1 cut(s) 1383
Bme18I GGWCC 3 cut(s) 824, 1105, 1378
BmeT110I CYCGRG 1 cut(s) 1227
BmgT120I GGNCC 3 cut(s) 824, 1105, 1378
BmiI GGNNCC 3 cut(s) 282, 1379, 1380
BmrFI CCNGG 1 cut(s) 1383
BmrI ACTGGG 1 cut(s) 1311
BmtI GCTAGC 1 cut(s) 1323
BmuI ACTGGG 1 cut(s) 1311
BplI GAGNNNNNCTC 2 cut(s) 538, 570
Bpu1102I GCTNAGC 1 cut(s) 1023
Bpu14I TTCGAA 5 cut(s) 206, 371, 377, 677, 974
BpuEI CTTGAG 1 cut(s) 1150
BsaJI CCNNGG 4 cut(s) 108, 238, 813, 1381
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 1050, 1114, 1375, 1388
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 1010, 1306
Bse3DI GCAATG 1 cut(s) 1321
BseBI CCWGG 1 cut(s) 1383
BseDI CCNNGG 4 cut(s) 108, 238, 813, 1381
BseGI GGATG 6 cut(s) 69, 196, 346, 649, 748, 1087
BseLI CCNNNNNNNGG 5 cut(s) 103, 1050, 1114, 1375, 1388
BseMI GCAATG 1 cut(s) 1321
BseMII CTCAG 4 cut(s) 237, 591, 1014, 1179
BseNI ACTGG 2 cut(s) 1010, 1306
BseRI GAGGAG 6 cut(s) 22, 326, 329, 499, 742, 744
BseSI GKGCMC 1 cut(s) 283
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 6 cut(s) 166, 204, 207, 440, 840, 1151
BseYI CCCAGC 1 cut(s) 1327
Bsh1236I CGCG 2 cut(s) 110, 1171
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 107, 214, 257
BshNI GGYRCC 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 1227
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 3 cut(s) 795, 917, 1364
BslI CCNNNNNNNGG 5 cut(s) 103, 1050, 1114, 1375, 1388
BsmAI GTCTC 1 cut(s) 740
BsmFI GGGAC 3 cut(s) 795, 917, 1364
BsmI GAATGC 2 cut(s) 310, 1141
BsnI GGCC 3 cut(s) 107, 214, 257
BsoBI CYCGRG 1 cut(s) 1227
Bsp119I TTCGAA 5 cut(s) 206, 371, 377, 677, 974
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 5 cut(s) 292, 773, 1057, 1231, 1291
Bsp1720I GCTNAGC 1 cut(s) 1023
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 4 cut(s) 97, 108, 110, 215
BspANI GGCC 3 cut(s) 107, 214, 257
BspCNI CTCAG 4 cut(s) 238, 590, 1015, 1178
BspFNI CGCG 2 cut(s) 110, 1171
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 282, 1379, 1380
BspMAI CTGCAG 1 cut(s) 225
BspOI GCTAGC 1 cut(s) 1323
BspPI GGATC 1 cut(s) 287
BspQI GCTCTTC 1 cut(s) 374
BspT104I TTCGAA 5 cut(s) 206, 371, 377, 677, 974
BspT107I GGYRCC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 1321
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 2 cut(s) 1010, 1306
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 4 cut(s) 108, 238, 813, 1381
BssMI GATC 5 cut(s) 292, 773, 1057, 1231, 1291
BssT1I CCWWGG 2 cut(s) 238, 813
Bst2UI CCWGG 1 cut(s) 1383
Bst4CI ACNGT 2 cut(s) 600, 1067
Bst6I CTCTTC 4 cut(s) 374, 474, 584, 719
BstBI TTCGAA 5 cut(s) 206, 371, 377, 677, 974
BstC8I GCNNGC 5 cut(s) 101, 105, 551, 1321, 1325
BstDEI CTNAG 6 cut(s) 246, 577, 834, 1002, 1023, 1165
BstDSI CCRYGG 2 cut(s) 108, 813
BstF5I GGATG 6 cut(s) 69, 196, 346, 649, 748, 1087
BstFNI CGCG 2 cut(s) 110, 1171
BstHHI GCGC 1 cut(s) 1171
BstKTI GATC 5 cut(s) 295, 776, 1060, 1234, 1294
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 5 cut(s) 292, 773, 1057, 1231, 1291
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 127, 220, 1320
BstNI CCWGG 1 cut(s) 1383
BstSCI CCNGG 1 cut(s) 1381
BstSFI CTRYAG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 2 cut(s) 110, 1171
BstV1I GCAGC 6 cut(s) 166, 204, 207, 440, 840, 1151
BstXI CCANNNNNNTGG 1 cut(s) 1250
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 3 cut(s) 107, 214, 257
BtgI CCRYGG 2 cut(s) 108, 813
BtgZI GCGATG 1 cut(s) 1186
BtsCI GGATG 6 cut(s) 69, 196, 346, 649, 748, 1087
BtsI GCAGTG 1 cut(s) 1255
BtsIMutI CAGTG 3 cut(s) 407, 1255, 1299
Cac8I GCNNGC 5 cut(s) 101, 105, 551, 1321, 1325
CciI TCATGA 1 cut(s) 517
CfoI GCGC 1 cut(s) 1171
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 824, 1105, 1378
Cfr42I CCGCGG 1 cut(s) 111
Csp6I GTAC 2 cut(s) 7, 196
CviQI GTAC 2 cut(s) 7, 196
DdeI CTNAG 6 cut(s) 246, 577, 834, 1002, 1023, 1165
DpnI GATC 5 cut(s) 294, 775, 1059, 1233, 1293
DpnII GATC 5 cut(s) 292, 773, 1057, 1231, 1291
DraI TTTAAA 1 cut(s) 1336
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 4 cut(s) 374, 474, 584, 719
EarI CTCTTC 4 cut(s) 374, 474, 584, 719
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 238, 813
Eco47I GGWCC 3 cut(s) 824, 1105, 1378
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 4 cut(s) 64, 116, 417, 431
Eco88I CYCGRG 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 1378
EcoRI GAATTC 3 cut(s) 373, 930, 1097
EcoRII CCWGG 1 cut(s) 1381
EcoT14I CCWWGG 2 cut(s) 238, 813
ErhI CCWWGG 2 cut(s) 238, 813
FaqI GGGAC 3 cut(s) 795, 917, 1364
FauNDI CATATG 1 cut(s) 792
FbaI TGATCA 1 cut(s) 1291
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 9 cut(s) 97, 108, 155, 215, 218, 221, 429, 854, 1140
FokI GGATG 6 cut(s) 56, 203, 353, 656, 755, 1094
Fsp4HI GCNGC 9 cut(s) 97, 108, 155, 215, 218, 221, 429, 854, 1140
FspBI CTAG 2 cut(s) 1143, 1320
GlaI GCGC 1 cut(s) 1170
GluI GCNGC 9 cut(s) 97, 108, 155, 215, 218, 221, 429, 854, 1140
GsaI CCCAGC 1 cut(s) 1331
HaeIII GGCC 3 cut(s) 107, 214, 257
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 1171
Hin6I GCGC 1 cut(s) 1169
HinP1I GCGC 1 cut(s) 1169
HindIII AAGCTT 5 cut(s) 128, 349, 797, 836, 1004
HinfI GANTC 4 cut(s) 44, 161, 175, 1213
HpaII CCGG 1 cut(s) 104
HphI GGTGA 6 cut(s) 43, 444, 830, 1079, 1099, 1199
Hpy166II GTNNAC 2 cut(s) 7, 1015
Hpy188I TCNGA 7 cut(s) 139, 580, 618, 778, 862, 877, 936
Hpy188III TCNNGA 4 cut(s) 88, 518, 844, 927
Hpy8I GTNNAC 2 cut(s) 7, 1015
Hpy99I CGWCG 1 cut(s) 1196
HpyAV CCTTC 8 cut(s) 83, 88, 331, 684, 815, 882, 910, 1381
HpyCH4III ACNGT 2 cut(s) 600, 1067
HpyCH4V TGCA 7 cut(s) 63, 223, 275, 308, 948, 1139, 1223
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 220, 1320
HpyF3I CTNAG 6 cut(s) 246, 577, 834, 1002, 1023, 1165
HspAI GCGC 1 cut(s) 1169
KflI GGGWCCC 1 cut(s) 1378
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 1291
KspI CCGCGG 1 cut(s) 111
Kzo9I GATC 5 cut(s) 292, 773, 1057, 1231, 1291
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 4 cut(s) 242, 425, 486, 919
Lsp1109I GCAGC 6 cut(s) 166, 204, 207, 440, 840, 1151
MaeI CTAG 2 cut(s) 1143, 1320
MaeIII GTNAC 3 cut(s) 49, 450, 1205
MalI GATC 5 cut(s) 294, 775, 1059, 1233, 1293
MboI GATC 5 cut(s) 292, 773, 1057, 1231, 1291
MboII GAAGA 8 cut(s) 195, 391, 481, 491, 601, 727, 736, 1102
MhlI GDGCHC 1 cut(s) 283
MlyI GAGTC 2 cut(s) 53, 155
MroNI GCCGGC 1 cut(s) 103
MroXI GAANNNNTTC 3 cut(s) 1037, 1097, 1370
MseI TTAA 4 cut(s) 288, 420, 765, 1335
MslI CAYNNNNRTG 1 cut(s) 1248
MspA1I CMGCKG 2 cut(s) 110, 217
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 1383
Mva1269I GAATGC 2 cut(s) 310, 1141
MvaI CCWGG 1 cut(s) 1383
MvnI CGCG 2 cut(s) 110, 1171
MwoI GCNNNNNNNGC 3 cut(s) 127, 220, 1320
NaeI GCCGGC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 813
NdeI CATATG 1 cut(s) 792
NdeII GATC 5 cut(s) 292, 773, 1057, 1231, 1291
NgoMIV GCCGGC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 1319
NlaIV GGNNCC 3 cut(s) 282, 1379, 1380
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 3 cut(s) 49, 450, 1205
NspV TTCGAA 5 cut(s) 206, 371, 377, 677, 974
PagI TCATGA 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 683
PctI GAATGC 2 cut(s) 310, 1141
PdiI GCCGGC 1 cut(s) 105
PdmI GAANNNNTTC 3 cut(s) 1037, 1097, 1370
PfeI GAWTC 2 cut(s) 175, 1213
PflMI CCANNNNNTGG 1 cut(s) 1050
PkrI GCNGC 9 cut(s) 98, 109, 156, 216, 219, 222, 430, 855, 1141
PleI GAGTC 2 cut(s) 52, 155
PpsI GAGTC 2 cut(s) 52, 155
PpuMI RGGWCCY 1 cut(s) 1378
Psp5II RGGWCCY 1 cut(s) 1378
Psp6I CCWGG 1 cut(s) 1381
PspFI CCCAGC 1 cut(s) 1327
PspGI CCWGG 1 cut(s) 1381
PspN4I GGNNCC 3 cut(s) 282, 1379, 1380
PspPI GGNCC 3 cut(s) 824, 1105, 1378
PspPPI RGGWCCY 1 cut(s) 1378
PstI CTGCAG 1 cut(s) 225
RsaI GTAC 2 cut(s) 8, 197
RsaNI GTAC 2 cut(s) 7, 196
RseI CAYNNNNRTG 1 cut(s) 1248
SacII CCGCGG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 4 cut(s) 288, 420, 765, 1335
SatI GCNGC 9 cut(s) 97, 108, 155, 215, 218, 221, 429, 854, 1140
Sau3AI GATC 5 cut(s) 292, 773, 1057, 1231, 1291
Sau96I GGNCC 3 cut(s) 824, 1105, 1378
SchI GAGTC 2 cut(s) 53, 155
ScrFI CCNGG 1 cut(s) 1383
SduI GDGCHC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 221
Sfr303I CCGCGG 1 cut(s) 111
SfuI TTCGAA 5 cut(s) 206, 371, 377, 677, 974
SgrBI CCGCGG 1 cut(s) 111
SinI GGWCC 3 cut(s) 824, 1105, 1378
SmiMI CAYNNNNRTG 1 cut(s) 1248
SmlI CTYRAG 1 cut(s) 1129
SmoI CTYRAG 1 cut(s) 1129
SsiI CCGC 4 cut(s) 97, 108, 110, 215
SspMI CTAG 2 cut(s) 1143, 1320
StyD4I CCNGG 1 cut(s) 1381
StyI CCWWGG 2 cut(s) 238, 813
TaaI ACNGT 2 cut(s) 600, 1067
TaqI TCGA 9 cut(s) 125, 206, 371, 377, 495, 657, 677, 926, 974
TaqII GACCGA 1 cut(s) 953
TatI WGTACW 1 cut(s) 6
TauI GCSGC 3 cut(s) 99, 110, 217
TfiI GAWTC 2 cut(s) 175, 1213
Tru1I TTAA 4 cut(s) 288, 420, 765, 1335
Tru9I TTAA 4 cut(s) 288, 420, 765, 1335
TscAI CASTG 3 cut(s) 414, 1255, 1306
TseFI GTSAC 3 cut(s) 49, 450, 1205
TseI GCWGC 6 cut(s) 154, 217, 220, 428, 853, 1139
Tsp45I GTSAC 3 cut(s) 49, 450, 1205
TspDTI ATGAA 9 cut(s) 371, 534, 779, 809, 874, 1175, 1212, 1227, 1284
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 3 cut(s) 414, 1255, 1306
Van91I CCANNNNNTGG 1 cut(s) 1050
VpaK11BI GGWCC 3 cut(s) 824, 1105, 1378
XapI RAATTY 5 cut(s) 373, 607, 930, 968, 1097
XmiI GTMKAC 1 cut(s) 1014
XmnI GAANNNNTTC 3 cut(s) 1037, 1097, 1370
XspI CTAG 2 cut(s) 1143, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.