Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010295

Physical Location & Seq

Genomic Coordinates Reverse (-)

10937489 .. 10939267

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAAGGCTTTACCATTGATCTGTTTGACAATTCATTATATCGATCCAGCTGCTATATTTCGTCCATCTGCTCTGTCTACAGTTCGTGTTGAACATGACTCGGCTGGCATGCTGGCGATTAATCTACCTCCAAATTCATTTCGATCTCTTCAATTTGGGTTTCTTGGTGCTGATCCAGGTGATACTCCAATTGAATCCAGTAAAACCAAAGTCTATTCATCAAGGGAAGCTGAGAAAGAATCTGTAAGTGATGATGAGTGTGTTAAAGAAACGCATTCACTTCTTCGTGAAGTTCATCAAGCAATCTTCGATGATCAGGTGTTTAATTTGGTAAATCGTGAAGCTTTCAATCAAACTCTAGGAGTCAATGTAACTGGAATACAAGAAAATTATTTGCAACTGAATATTGGTGAAGGAACCTCTGTGTTCATATCACTTATCCCATCTAAAGATGAACAAACGGCTGACAGTCCAAGCACCCAAAACATAGAGAATGCAATTTTACCTTTGGACACATTGGATGGCCTGCAGTTCCCAGAGGATGATAAACCGGAAACCCCAAAGATAAAGTCAATAATTCCTGATCAAATTAGTTGTGAAATATATCTGCAACAGATTTTTCACCAGCATGTATTTGTCAAAGCAAAGGATATACCAACTTCAACAGGTGCTCGAGTATCTGGTCAACCAGCCAAAGAAGGTTCTGGACTTCTTGGTCATTTCTGTTTGTCTTTGGCTCATCAGATCTTTTCAAACAAAGTTCTTAAGGAGCTGGAAAATGTGGTTAAAGGGGTACCATATCTGCAGCTGTTATCTCACCCCACTTGGCATTCGCGGACATCATCATGGATGCTCTCTGTGAAGATTCCTCAATCTATTCTACATGCATGCCAAACCCGAGCATCTGACATGCGTCACATGAGGAACGTTGCCAAGTCTCAGTTTCATACTAAGGTGGTTGTAACAGATGATTGCATCAATGTAGAAGGGGAAGGTGCTCCTAATGTGGTTGGCCTGTTCAACGAGAATTCTGAGGAAATTTGTTCAATGAACAGATACGATTGCGACTTGGCAGATCTTCCCGTGATAATTTTGCAGCAGGTTGCAGGTCAAGTTATTCGCTGGCTTCACGAAGAAGCTCTTACGGTTGGAATAAAGGCAAAACGAGACTTTCTTTGTTTGTCATTTGAGCTGGATCAGGGCGAAACACTCAGTTTGGTGGCACATGTGGACCCAGAAGACAGTGAAGGATGTATCTCATGGTGGTTGGTCATAGACGGCGGGTTTATAGAGGAACGAAAACTCAGTATAGACGCTTCCGATGCTGCATCAGAAACTAGGAAGTTTTTAGGTCATCTATCCCTGGAAGTGTTATATTCAACACTGATGGACTTGGTTAGCCTGTGCAACGGAGGCGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0019222 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med17

Protein Analysis

475

Amino Acids

52.38

Weight (kDa)

4.96

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20170
fragaria_vesca	FvH4_5g23630 FvH4_5g23630 FvH4_5g23630 FvH4_5g23630
malus_domestica	MD02G1034800.v1.1 MD15G1175600.v1.1
prunus_persica	Prupe.7G240500_v2.0.a1
pyrus_communis	pycom02g02840 pycom15g15710
rosa_chinensis	RchiOBHm_Chr7g0212931
rosa_laevigata	RLG00000002843
rosa_multiflora	Rmu_co8301145.1_g000001 Rmu_sc0001684.1_g000012
rosa_roxburghii	Rroxscaffold_3G00246410
rosa_rugosa	Rorug07G0138300
rosa_samantha	Rh7AG269500 Rh7BG265000 Rh7CG288700 Rh7DG277600
rosa_wichuraiana	Rw7G023410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	714
Acc36I	ACCTGC	2 cut(s)	1090, 1097
Acc65I	GGTACC	1 cut(s)	793
AccB1I	GGYRCC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	1 cut(s)	835
AciI	CCGC	3 cut(s)	835, 1281, 1416
AclI	AACGTT	1 cut(s)	927
AclWI	GGATC	3 cut(s)	38, 167, 1203
AcsI	RAATTY	3 cut(s)	133, 1027, 1038
AfaI	GTAC	1 cut(s)	795
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	1225
AgsI	TTSAA	9 cut(s)	92, 152, 194, 349, 663, 753, 1021, 1047, 1380
AjnI	CCWGG	2 cut(s)	175, 1362
AluBI	AGCT	7 cut(s)	50, 230, 344, 772, 808, 1139, 1192
AluI	AGCT	7 cut(s)	50, 230, 344, 772, 808, 1139, 1192
Alw21I	GWGCWC	2 cut(s)	673, 1000
Alw26I	GTCTC	2 cut(s)	942, 1161
AlwI	GGATC	3 cut(s)	38, 167, 1203
Ama87I	CYCGRG	2 cut(s)	672, 897
AoxI	GGCC	2 cut(s)	523, 1012
ApeKI	GCWGC	4 cut(s)	50, 805, 1096, 1325
ApoI	RAATTY	3 cut(s)	133, 1027, 1038
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AseI	ATTAAT	1 cut(s)	120
Asp718I	GGTACC	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	1231
AsuHPI	GGTGA	4 cut(s)	191, 422, 614, 809
AvaI	CYCGRG	2 cut(s)	672, 897
AvaII	GGWCC	1 cut(s)	1231
BanI	GGYRCC	1 cut(s)	793
BarI	GAAGNNNNNNTAC	2 cut(s)	1300, 1332
BbsI	GAAGAC	1 cut(s)	1245
Bbv12I	GWGCWC	2 cut(s)	673, 1000
BbvI	GCAGC	4 cut(s)	37, 817, 1108, 1312
BccI	CCATC	4 cut(s)	73, 451, 515, 1381
BceAI	ACGGC	2 cut(s)	477, 1294
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	177, 1364
BclI	TGATCA	2 cut(s)	313, 583
BcoDI	GTCTC	2 cut(s)	942, 1161
BfaI	CTAG	2 cut(s)	359, 1338
BfmI	CTRYAG	3 cut(s)	78, 527, 803
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	2 cut(s)	1090, 1097
BglII	AGATCT	2 cut(s)	744, 1075
BisI	GCNGC	4 cut(s)	51, 806, 1097, 1326
BlsI	GCNGC	4 cut(s)	52, 807, 1098, 1327
Bme1390I	CCNGG	2 cut(s)	177, 1364
Bme18I	GGWCC	1 cut(s)	1231
BmeT110I	CYCGRG	2 cut(s)	672, 897
BmgT120I	GGNCC	1 cut(s)	1231
BmiI	GGNNCC	3 cut(s)	418, 795, 1233
BmrFI	CCNGG	2 cut(s)	177, 1364
BmsI	GCATC	5 cut(s)	840, 911, 984, 1312, 1337
BoxI	GACNNNNGTC	1 cut(s)	912
BpiI	GAAGAC	1 cut(s)	1245
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	1362
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bse1I	ACTGG	2 cut(s)	198, 379
BseBI	CCWGG	2 cut(s)	177, 1364
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	1362
BseGI	GGATG	4 cut(s)	526, 547, 855, 1256
BseMII	CTCAG	5 cut(s)	222, 953, 1023, 1225, 1318
BseNI	ACTGG	2 cut(s)	198, 379
BseXI	GCAGC	4 cut(s)	37, 817, 1108, 1312
Bsh1236I	CGCG	1 cut(s)	835
BshFI	GGCC	2 cut(s)	525, 1014
BshNI	GGYRCC	1 cut(s)	793
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	673, 1000
BsiHKCI	CYCGRG	2 cut(s)	672, 897
BsiSI	CCGG	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	942, 1161
BsmI	GAATGC	3 cut(s)	274, 499, 829
BsnI	GGCC	2 cut(s)	525, 1014
BsoBI	CYCGRG	2 cut(s)	672, 897
Bsp1286I	GDGCHC	2 cut(s)	673, 1000
Bsp143I	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
BspACI	CCGC	3 cut(s)	835, 1281, 1416
BspANI	GGCC	2 cut(s)	525, 1014
BspCNI	CTCAG	5 cut(s)	223, 952, 1024, 1224, 1317
BspDI	ATCGAT	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	835
BspLI	GGNNCC	3 cut(s)	418, 795, 1233
BspMAI	CTGCAG	2 cut(s)	531, 807
BspMI	ACCTGC	2 cut(s)	1090, 1097
BspPI	GGATC	3 cut(s)	38, 167, 1203
BspT107I	GGYRCC	1 cut(s)	793
BspTI	CTTAAG	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	198, 379
BssECI	CCNNGG	1 cut(s)	1362
BssMI	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
Bst2UI	CCWGG	2 cut(s)	177, 1364
Bst4CI	ACNGT	4 cut(s)	82, 470, 1147, 1244
Bst6I	CTCTTC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	764
BstC8I	GCNNGC	6 cut(s)	106, 110, 114, 527, 889, 1124
BstDEI	CTNAG	6 cut(s)	231, 939, 951, 1032, 1211, 1304
BstF5I	GGATG	4 cut(s)	526, 547, 855, 1256
BstFNI	CGCG	1 cut(s)	835
BstKTI	GATC	9 cut(s)	21, 46, 146, 175, 316, 586, 747, 1078, 1198
BstMAI	GTCTC	2 cut(s)	942, 1161
BstMBI	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
BstMWI	GCNNNNNNNGC	2 cut(s)	1322, 1413
BstNI	CCWGG	2 cut(s)	177, 1364
BstNSI	RCATGY	6 cut(s)	112, 632, 887, 891, 913, 1229
BstPAI	GACNNNNGTC	1 cut(s)	912
BstSCI	CCNGG	2 cut(s)	175, 1362
BstSFI	CTRYAG	3 cut(s)	78, 527, 803
BstUI	CGCG	1 cut(s)	835
BstV1I	GCAGC	4 cut(s)	37, 817, 1108, 1312
BstV2I	GAAGAC	1 cut(s)	1245
BstX2I	RGATCY	2 cut(s)	744, 1075
BstYI	RGATCY	2 cut(s)	744, 1075
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	525, 1014
BsuTUI	ATCGAT	1 cut(s)	42
BtsCI	GGATG	4 cut(s)	526, 547, 855, 1256
BtsIMutI	CAGTG	2 cut(s)	1249, 1382
BveI	ACCTGC	2 cut(s)	1090, 1097
Cac8I	GCNNGC	6 cut(s)	106, 110, 114, 527, 889, 1124
Cfr13I	GGNCC	1 cut(s)	1231
ClaI	ATCGAT	1 cut(s)	42
CseI	GACGC	2 cut(s)	902, 1322
Csp6I	GTAC	1 cut(s)	794
CviQI	GTAC	1 cut(s)	794
DdeI	CTNAG	6 cut(s)	231, 939, 951, 1032, 1211, 1304
DpnI	GATC	9 cut(s)	20, 45, 145, 174, 315, 585, 746, 1077, 1197
DpnII	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
DrdI	GACNNNNNNGTC	1 cut(s)	714
DseDI	GACNNNNNNGTC	1 cut(s)	714
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	1231
Eco88I	CYCGRG	2 cut(s)	672, 897
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	2 cut(s)	175, 1362
EcoT22I	ATGCAT	1 cut(s)	889
FalI	AAGNNNNNCTT	2 cut(s)	1125, 1157
FauI	CCCGC	1 cut(s)	1274
FbaI	TGATCA	2 cut(s)	313, 583
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	51, 806, 1097, 1326
FokI	GGATG	4 cut(s)	533, 554, 862, 1263
Fsp4HI	GCNGC	4 cut(s)	51, 806, 1097, 1326
FspBI	CTAG	2 cut(s)	359, 1338
GluI	GCNGC	4 cut(s)	51, 806, 1097, 1326
HaeIII	GGCC	2 cut(s)	525, 1014
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	2 cut(s)	902, 1322
HincII	GTYRAC	1 cut(s)	686
HindII	GTYRAC	1 cut(s)	686
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	5 cut(s)	98, 194, 239, 363, 865
HpaII	CCGG	1 cut(s)	551
HphI	GGTGA	4 cut(s)	191, 422, 614, 809
Hpy166II	GTNNAC	3 cut(s)	78, 686, 1231
Hpy188I	TCNGA	5 cut(s)	744, 907, 1033, 1321, 1333
Hpy188III	TCNNGA	5 cut(s)	287, 338, 581, 705, 1130
Hpy8I	GTNNAC	3 cut(s)	78, 686, 1231
HpyAV	CCTTC	5 cut(s)	407, 692, 980, 986, 1241
HpyCH4III	ACNGT	4 cut(s)	82, 470, 1147, 1244
HpyCH4IV	ACGT	1 cut(s)	927
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1322, 1413
HpyF3I	CTNAG	6 cut(s)	231, 939, 951, 1032, 1211, 1304
HpySE526I	ACGT	1 cut(s)	927
KpnI	GGTACC	1 cut(s)	797
Ksp22I	TGATCA	2 cut(s)	313, 583
Kzo9I	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
LmnI	GCTCC	2 cut(s)	769, 1003
Lsp1109I	GCAGC	4 cut(s)	37, 817, 1108, 1312
LweI	GCATC	5 cut(s)	840, 911, 984, 1312, 1337
MaeI	CTAG	2 cut(s)	359, 1338
MaeII	ACGT	1 cut(s)	927
MaeIII	GTNAC	4 cut(s)	370, 914, 961, 1418
MalI	GATC	9 cut(s)	20, 45, 145, 174, 315, 585, 746, 1077, 1197
MboI	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
MboII	GAAGA	7 cut(s)	140, 275, 298, 874, 1070, 1145, 1250
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	2 cut(s)	744, 1075
MhlI	GDGCHC	2 cut(s)	673, 1000
MlyI	GAGTC	2 cut(s)	92, 372
MmeI	TCCRAC	1 cut(s)	1129
MnlI	CCTC	8 cut(s)	138, 430, 532, 879, 915, 1027, 1285, 1406
Mph1103I	ATGCAT	1 cut(s)	889
MseI	TTAA	5 cut(s)	120, 264, 324, 765, 786
MslI	CAYNNNNRTG	2 cut(s)	627, 844
MspA1I	CMGCKG	2 cut(s)	50, 808
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	2 cut(s)	177, 1364
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	3 cut(s)	274, 499, 829
MvaI	CCWGG	2 cut(s)	177, 1364
MvnI	CGCG	1 cut(s)	835
MwoI	GCNNNNNNNGC	2 cut(s)	1322, 1413
NdeII	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
NlaIV	GGNNCC	3 cut(s)	418, 795, 1233
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	914
NsiI	ATGCAT	1 cut(s)	889
NspI	RCATGY	6 cut(s)	112, 632, 887, 891, 913, 1229
PaeI	GCATGC	2 cut(s)	112, 891
PaeR7I	CTCGAG	1 cut(s)	672
PciI	ACATGT	1 cut(s)	1225
PctI	GAATGC	3 cut(s)	274, 499, 829
PfeI	GAWTC	3 cut(s)	194, 239, 865
PkrI	GCNGC	4 cut(s)	52, 807, 1098, 1327
PleI	GAGTC	2 cut(s)	92, 371
PpsI	GAGTC	2 cut(s)	92, 371
PscI	ACATGT	1 cut(s)	1225
PshAI	GACNNNNGTC	1 cut(s)	912
PshBI	ATTAAT	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	175, 1362
PspGI	CCWGG	2 cut(s)	175, 1362
PspN4I	GGNNCC	3 cut(s)	418, 795, 1233
PspPI	GGNCC	1 cut(s)	1231
PspXI	VCTCGAGB	1 cut(s)	672
PstI	CTGCAG	2 cut(s)	531, 807
PsuI	RGATCY	2 cut(s)	744, 1075
PvuII	CAGCTG	2 cut(s)	50, 808
RsaI	GTAC	1 cut(s)	795
RsaNI	GTAC	1 cut(s)	794
RseI	CAYNNNNRTG	2 cut(s)	627, 844
SaqAI	TTAA	5 cut(s)	120, 264, 324, 765, 786
SatI	GCNGC	4 cut(s)	51, 806, 1097, 1326
Sau3AI	GATC	9 cut(s)	18, 43, 143, 172, 313, 583, 744, 1075, 1195
Sau96I	GGNCC	1 cut(s)	1231
SchI	GAGTC	2 cut(s)	92, 372
ScrFI	CCNGG	2 cut(s)	177, 1364
SduI	GDGCHC	2 cut(s)	673, 1000
SfaNI	GCATC	5 cut(s)	840, 911, 984, 1312, 1337
SfcI	CTRYAG	3 cut(s)	78, 527, 803
Sfr274I	CTCGAG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	1231
SlaI	CTCGAG	1 cut(s)	672
SmiMI	CAYNNNNRTG	2 cut(s)	627, 844
SmlI	CTYRAG	2 cut(s)	672, 764
SmoI	CTYRAG	2 cut(s)	672, 764
SphI	GCATGC	2 cut(s)	112, 891
SsiI	CCGC	3 cut(s)	835, 1281, 1416
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	2 cut(s)	359, 1338
StyD4I	CCNGG	2 cut(s)	175, 1362
TaaI	ACNGT	4 cut(s)	82, 470, 1147, 1244
TaiI	ACGT	1 cut(s)	930
TaqI	TCGA	4 cut(s)	42, 142, 309, 673
TfiI	GAWTC	3 cut(s)	194, 239, 865
Tru1I	TTAA	5 cut(s)	120, 264, 324, 765, 786
Tru9I	TTAA	5 cut(s)	120, 264, 324, 765, 786
TscAI	CASTG	2 cut(s)	1249, 1389
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	4 cut(s)	50, 805, 1096, 1325
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	9 cut(s)	17, 23, 126, 207, 284, 418, 468, 935, 1064
TspGWI	ACGGA	1 cut(s)	1425
TspRI	CASTG	2 cut(s)	1249, 1389
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	1231
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	3 cut(s)	133, 1027, 1038
XceI	RCATGY	6 cut(s)	112, 632, 887, 891, 913, 1229
XhoI	CTCGAG	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	2 cut(s)	359, 1338
Zsp2I	ATGCAT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.