pycom15g16280

Transmembrane protein 19-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015870
Physical Location & Seq
Forward (+)
11408966 .. 11410651
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 864 bp
ATGGATAAACTCTTAATCCAACCGCTAATCGCGGTCTTAATCTCGTCGTTGATCGCCGCCAGATCCTACCGAAGAAATTCACTCAACCTCTCAGGGACAGTCGCGGGTTTTGCCGTCATGACCATCCACATTGCAGTCGGGTACAGGTACGGAGCTTTGCTGCTGATGTTCTTCTTCACATCGTCGAAGCTGACCAAGGTCGGGGAAGACAAGAAGCGGCGCGTCGACGCCGATTTCAAAGAGGGTGGCCAGAGAAATTGGGTGCAGGTGTTATCCAACAGTGGGATCGCGTCGATCTTGGTTCTGATTCTGTGGGCAAAATCGGGATTGCAGGAGAAGTGCTTGGACTCGAACGACTCAGTTCTCGTTACGGCGCTCGTTGGTGGGGTTATTGGTCACTATGCTTGCAGCAATGGCGACACCTGGTCTTCTGAGCTCGGAGTTCTCAGTGATGCTCAGCCTTGGTTGATCACGACTCTTAAGCCTGTTCGGAAGGGTACCAATGGCGGAGTTACAATAGCAGGACTACTGGCAGCTGCAGCTGCAGGCTCTGTTATCGGACTGACATTTGTGGTTATTGGATTTCTCACTACAAAATGCGCATATGATGTAGCACTGAAGCAGCTGTTGGTGATACCTATTTCTACTCTTGCCGGACTAGGTGGTAGTGCCATTGATTCTCTTTTGGGAGCAACGCTGCAATTCAGTGGATTCTGCACTGTTCGTAACAAGGTTGTTGGAAAGCCGGGGCCAAAAGTTAAGCAAATTTCAGGTCTTAACTTTCTTGACAACAATGCTGTGAATGTTGTTTCGATACTGCTGACAACAATTCTCACTTCCATTGCCTGCGTTTACATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

288

Amino Acids

30.25

Weight (kDa)

9.49

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 14 - 275 7.6e-77 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015870)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19930 AT5G19930
fragaria_vesca FvH4_1g04221
malus_domestica MD02G1061500.v1.1
prunus_persica Prupe.7G235100_v2.0.a1
pyrus_communis pycom15g16280
rosa_chinensis RchiOBHm_Chr2g0089771
rosa_laevigata RLG00000016054
rosa_roxburghii Rroxscaffold_2G00151630
rosa_rugosa Rorug02G0003100
rosa_samantha Rh2AG048300 Rh2BG047100 Rh2CG049200 Rh2DG048600
rosa_wichuraiana Rw2G004210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 256
Acc16I TGCGCA 1 cut(s) 601
Acc36I ACCTGC 1 cut(s) 256
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 225
AccII CGCG 4 cut(s) 32, 104, 222, 290
AciI CCGC 6 cut(s) 23, 32, 57, 104, 217, 507
AclWI GGATC 2 cut(s) 57, 293
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 76, 765
AcuI CTGAAG 1 cut(s) 638
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 3 cut(s) 143, 149, 499
AfiI CCNNNNNNNGG 2 cut(s) 201, 282
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 1 cut(s) 238
AhdI GACNNNNNGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 422
AjuI GAANNNNNNNTTGG 2 cut(s) 611, 643
AluBI AGCT 6 cut(s) 155, 190, 436, 536, 542, 625
AluI AGCT 6 cut(s) 155, 190, 436, 536, 542, 625
Alw21I GWGCWC 1 cut(s) 438
AlwI GGATC 2 cut(s) 57, 293
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 2 cut(s) 247, 749
ApeKI GCWGC 8 cut(s) 160, 408, 533, 536, 539, 542, 622, 697
ApoI RAATTY 2 cut(s) 76, 765
ArsI GACNNNNNNTTYG 2 cut(s) 757, 789
Asp700I GAANNNNTTC 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 3 cut(s) 222, 376, 602
AspS9I GGNCC 1 cut(s) 749
AsuC2I CCSGG 1 cut(s) 747
AsuHPI GGTGA 1 cut(s) 643
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 438
BbsI GAAGAC 2 cut(s) 213, 420
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 8 cut(s) 147, 420, 523, 529, 545, 551, 634, 684
BccI CCATC 1 cut(s) 131
BceAI ACGGC 2 cut(s) 98, 387
BciT130I CCWGG 1 cut(s) 424
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 1 cut(s) 747
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 2 cut(s) 537, 543
BfoI RGCGCY 1 cut(s) 377
BfrI CTTAAG 1 cut(s) 479
BfuAI ACCTGC 1 cut(s) 256
BlpI GCTNAGC 1 cut(s) 456
Bme1390I CCNGG 2 cut(s) 424, 747
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 749
BmiI GGNNCC 2 cut(s) 499, 750
BmrFI CCNGG 2 cut(s) 424, 747
BmsI GCATC 1 cut(s) 442
BoxI GACNNNNGTC 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 213, 420
Bpu1102I GCTNAGC 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 195, 461, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 282
Bse1I ACTGG 1 cut(s) 534
Bse3DI GCAATG 3 cut(s) 129, 418, 840
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 3 cut(s) 195, 461, 746
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 201, 282
BseMI GCAATG 3 cut(s) 129, 418, 840
BseMII CTCAG 5 cut(s) 105, 372, 423, 460, 470
BseNI ACTGG 1 cut(s) 534
BseXI GCAGC 8 cut(s) 147, 420, 523, 529, 545, 551, 634, 684
BsgI GTGCAG 2 cut(s) 284, 700
Bsh1236I CGCG 4 cut(s) 32, 104, 222, 290
BshFI GGCC 2 cut(s) 249, 751
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 654, 746
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 201, 282
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 2 cut(s) 249, 751
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 5 cut(s) 51, 62, 285, 294, 468
Bsp1720I GCTNAGC 1 cut(s) 456
BspACI CCGC 6 cut(s) 23, 32, 57, 104, 217, 507
BspANI GGCC 2 cut(s) 249, 751
BspCNI CTCAG 5 cut(s) 104, 371, 424, 459, 469
BspFNI CGCG 4 cut(s) 32, 104, 222, 290
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 499, 750
BspMAI CTGCAG 2 cut(s) 541, 547
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 2 cut(s) 57, 293
BspT107I GGYRCC 1 cut(s) 497
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 3 cut(s) 129, 418, 840
BsrI ACTGG 1 cut(s) 534
BssECI CCNNGG 3 cut(s) 195, 461, 746
BssMI GATC 5 cut(s) 51, 62, 285, 294, 468
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 195, 461
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 3 cut(s) 100, 281, 721
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 406, 547, 847
BstDEI CTNAG 5 cut(s) 91, 358, 432, 446, 456
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 4 cut(s) 32, 104, 222, 290
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 3 cut(s) 222, 376, 602
BstKTI GATC 5 cut(s) 54, 65, 288, 297, 471
BstMBI GATC 5 cut(s) 51, 62, 285, 294, 468
BstMWI GCNNNNNNNGC 4 cut(s) 110, 414, 539, 542
BstNI CCWGG 1 cut(s) 424
BstPAI GACNNNNGTC 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 422, 745
BstSFI CTRYAG 2 cut(s) 537, 543
BstUI CGCG 4 cut(s) 32, 104, 222, 290
BstV1I GCAGC 8 cut(s) 147, 420, 523, 529, 545, 551, 634, 684
BstV2I GAAGAC 2 cut(s) 213, 420
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 2 cut(s) 249, 751
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 5 cut(s) 286, 454, 614, 712, 717
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 3 cut(s) 406, 547, 847
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 117
CfoI GCGC 3 cut(s) 222, 376, 602
Cfr13I GGNCC 1 cut(s) 749
CseI GACGC 3 cut(s) 211, 236, 279
CsiI ACCWGGT 1 cut(s) 422
Csp6I GTAC 3 cut(s) 142, 148, 498
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 1 cut(s) 118
CviQI GTAC 3 cut(s) 142, 148, 498
DdeI CTNAG 5 cut(s) 91, 358, 432, 446, 456
DpnI GATC 5 cut(s) 53, 64, 287, 296, 470
DpnII GATC 5 cut(s) 51, 62, 285, 294, 468
DriI GACNNNNNGTC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 247
Eam1105I GACNNNNNGTC 1 cut(s) 424
EciI GGCGGA 1 cut(s) 522
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 195, 461
Eco24I GRGCYC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 195, 461
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 195, 461
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 119, 402, 604, 606
FaqI GGGAC 1 cut(s) 109
FatI CATG 1 cut(s) 117
FauI CCCGC 1 cut(s) 97
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 225
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 438
FspAI RTGCGCAY 1 cut(s) 601
FspBI CTAG 1 cut(s) 659
FspI TGCGCA 1 cut(s) 601
GlaI GCGC 3 cut(s) 221, 375, 601
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 2 cut(s) 249, 751
HapII CCGG 2 cut(s) 654, 746
HgaI GACGC 3 cut(s) 211, 236, 279
HhaI GCGC 3 cut(s) 222, 376, 602
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 3 cut(s) 220, 374, 600
HinP1I GCGC 3 cut(s) 220, 374, 600
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 6 cut(s) 307, 347, 356, 475, 677, 711
HpaII CCGG 2 cut(s) 654, 746
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 2 cut(s) 226, 853
Hpy188I TCNGA 5 cut(s) 306, 433, 440, 492, 560
Hpy188III TCNNGA 4 cut(s) 118, 324, 472, 785
Hpy8I GTNNAC 2 cut(s) 226, 853
Hpy99I CGWCG 5 cut(s) 49, 187, 227, 230, 295
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 3 cut(s) 100, 281, 721
HpyCH4V TGCA 8 cut(s) 134, 265, 331, 408, 539, 545, 700, 717
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 414, 539, 542
HpyF3I CTNAG 5 cut(s) 91, 358, 432, 446, 456
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 3 cut(s) 220, 374, 600
KpnI GGTACC 1 cut(s) 501
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 5 cut(s) 51, 62, 285, 294, 468
LmnI GCTCC 2 cut(s) 152, 689
Lsp1109I GCAGC 8 cut(s) 147, 420, 523, 529, 545, 551, 634, 684
LweI GCATC 1 cut(s) 442
MabI ACCWGGT 1 cut(s) 422
MaeI CTAG 1 cut(s) 659
MaeIII GTNAC 4 cut(s) 367, 395, 511, 725
MalI GATC 5 cut(s) 53, 64, 287, 296, 470
MboI GATC 5 cut(s) 51, 62, 285, 294, 468
MboII GAAGA 5 cut(s) 84, 163, 166, 218, 420
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 438
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 5 cut(s) 76, 256, 701, 765, 828
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 3 cut(s) 341, 350, 469
MmeI TCCRAC 3 cut(s) 43, 300, 718
MnlI CCTC 2 cut(s) 98, 235
Mox20I TGGCCA 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 76
MscI TGGCCA 1 cut(s) 249
MseI TTAA 5 cut(s) 14, 38, 480, 759, 777
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 3 cut(s) 536, 542, 625
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 2 cut(s) 654, 746
MspR9I CCNGG 2 cut(s) 424, 747
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 4 cut(s) 32, 104, 222, 290
MwoI GCNNNNNNNGC 4 cut(s) 110, 414, 539, 542
NciI CCSGG 1 cut(s) 747
NdeI CATATG 1 cut(s) 604
NdeII GATC 5 cut(s) 51, 62, 285, 294, 468
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 499, 750
NmuCI GTSAC 1 cut(s) 395
NsbI TGCGCA 1 cut(s) 601
PagI TCATGA 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 76
PfeI GAWTC 3 cut(s) 307, 677, 711
PleI GAGTC 3 cut(s) 341, 350, 469
PpsI GAGTC 3 cut(s) 341, 350, 469
PshAI GACNNNNGTC 1 cut(s) 197
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 499, 750
PspPI GGNCC 1 cut(s) 749
PstI CTGCAG 2 cut(s) 541, 547
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 62
PvuII CAGCTG 3 cut(s) 536, 542, 625
RsaI GTAC 3 cut(s) 143, 149, 499
RsaNI GTAC 3 cut(s) 142, 148, 498
SacI GAGCTC 1 cut(s) 438
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 5 cut(s) 14, 38, 480, 759, 777
Sau3AI GATC 5 cut(s) 51, 62, 285, 294, 468
Sau96I GGNCC 1 cut(s) 749
SchI GAGTC 3 cut(s) 341, 350, 469
ScrFI CCNGG 2 cut(s) 424, 747
SduI GDGCHC 1 cut(s) 438
SexAI ACCWGGT 1 cut(s) 422
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 2 cut(s) 537, 543
SgrDI CGTCGACG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 5 cut(s) 76, 256, 701, 765, 828
SsiI CCGC 6 cut(s) 23, 32, 57, 104, 217, 507
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 422, 745
StyI CCWWGG 2 cut(s) 195, 461
TaaI ACNGT 3 cut(s) 100, 281, 721
TaqI TCGA 5 cut(s) 185, 225, 293, 350, 812
TasI AATT 5 cut(s) 76, 256, 701, 765, 828
TauI GCSGC 2 cut(s) 59, 220
TfiI GAWTC 3 cut(s) 307, 677, 711
Tru1I TTAA 5 cut(s) 14, 38, 480, 759, 777
Tru9I TTAA 5 cut(s) 14, 38, 480, 759, 777
TscAI CASTG 5 cut(s) 286, 454, 621, 712, 724
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 8 cut(s) 160, 408, 533, 536, 539, 542, 622, 697
Tsp45I GTSAC 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 5 cut(s) 286, 454, 621, 712, 724
Vha464I CTTAAG 1 cut(s) 479
XapI RAATTY 2 cut(s) 76, 765
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 76
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.