Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016181

Physical Location & Seq

Genomic Coordinates Forward (+)

13099322 .. 13101654

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGGGGAAGCCCCAACCGGTACGCGTACTGTACTGCGCGGTGTGCAGTTTGCCTGCAGAGTACTGTGAATTCGGACCTGATTTCGAGAAATGCAAGCCATGGTTGATCCAAAACGCCCCGGACCTTTACCCGGATCTCGTTAAAGAGGCTAATGCTAAGGAAACTGATAAAGTAGCCAACCAGTTGCAGTCCACTGGTATTTCTTCTGGAGGTGGTGATGGAGCTGCTTCTTCAGCACCTAAAGAAGAAGTCAAGCGCCTTCCAGGCGGGAAGATTAAGAAAAAGGAGAAGCAAGAAGTTACGATTGAAAAGGTCACACGTAATAAGCGAAAATGTATCACCACTGTGAAAGGACTGGAGCTTTTTGGTGTCAAACTTAGTGACGCTTCAAAGAAATTGGGTAAAAAGTTTGCCACGGGAGCCTCTGTTGTTAAGGGGCCAACTGAGAAGGACCAAATTGACGTTCAAGGAGATATAGCCTATGACATTGTGGAGTTCATTACGGATACTTGGCCTGATGTCCCAGAAGCTGCAATTTTCTTTATTGAAGATGGCAGAAAGGTCCCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001731 GO:0002181 GO:0002183 GO:0002188 GO:0002190 GO:0002192 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043021 GO:0043022 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0065003 GO:0070992 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0110017 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SUI1

Protein Analysis

193

Amino Acids

20.82

Weight (kDa)

8.17

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DENR_N	PF21023	10 - 45	2.5e-19	DENR, N-terminal
SUI1	PF01253	98 - 170	6.8e-22	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11900
fragaria_vesca	FvH4_1g07600
malus_domestica	MD02G1080600.v1.1 MD15G1208100.v1.1
prunus_persica	Prupe.7G208600_v2.0.a1
pyrus_communis	pycom02g06390 pycom15g18430
rosa_chinensis	RchiOBHm_Chr2g0093471
rosa_laevigata	RLG00000016409
rosa_multiflora	Rmu_sc0004086.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148060
rosa_rugosa	Rorug02G0036700
rosa_samantha	Rh2BG083700 Rh2DG081800
rosa_wichuraiana	Rw2G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 41
AciI	CCGC	3 cut(s)	5, 41, 270
AclWI	GGATC	2 cut(s)	103, 144
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	4 cut(s)	24, 30, 35, 65
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflIII	ACRYGT	2 cut(s)	25, 320
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	311, 393, 470, 551
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AleI	CACNNNNGTG	1 cut(s)	347
AluBI	AGCT	3 cut(s)	227, 364, 533
AluI	AGCT	3 cut(s)	227, 364, 533
AlwI	GGATC	2 cut(s)	103, 144
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	440, 515
ApeKI	GCWGC	3 cut(s)	227, 533, 572
ApoI	RAATTY	1 cut(s)	71
AsiGI	ACCGGT	1 cut(s)	19
AspLEI	GCGC	2 cut(s)	41, 261
AspS9I	GGNCC	5 cut(s)	77, 124, 440, 454, 565
AsuC2I	CCSGG	2 cut(s)	122, 134
AsuHPI	GGTGA	2 cut(s)	230, 334
AvaII	GGWCC	4 cut(s)	77, 124, 454, 565
BbvI	GCAGC	3 cut(s)	214, 520, 559
BccI	CCATC	2 cut(s)	215, 548
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	2 cut(s)	122, 134
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	502
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	3 cut(s)	228, 534, 573
BlsI	GCNGC	3 cut(s)	229, 535, 574
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	122, 134, 267
Bme18I	GGWCC	4 cut(s)	77, 124, 454, 565
BmgT120I	GGNCC	5 cut(s)	77, 124, 440, 454, 565
BmiI	GGNNCC	3 cut(s)	424, 441, 567
BmrFI	CCNGG	3 cut(s)	122, 134, 267
BpmI	CTGGAG	2 cut(s)	231, 380
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	2 cut(s)	122, 134
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	101, 120, 417
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	184, 202, 363
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	101, 120, 417
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	3 cut(s)	184, 202, 363
BseXI	GCAGC	3 cut(s)	214, 520, 559
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	2 cut(s)	27, 41
BshFI	GGCC	2 cut(s)	442, 517
BshTI	ACCGGT	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	20, 122, 134
BslFI	GGGAC	2 cut(s)	509, 551
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	509, 551
BsnI	GGCC	2 cut(s)	442, 517
Bsp143I	GATC	2 cut(s)	108, 136
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	3 cut(s)	5, 41, 270
BspANI	GGCC	2 cut(s)	442, 517
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	2 cut(s)	27, 41
BspLI	GGNNCC	3 cut(s)	424, 441, 567
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	2 cut(s)	103, 144
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	184, 202, 363
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	101, 120, 417
BssMI	GATC	2 cut(s)	108, 136
BssT1I	CCWWGG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	33, 68, 349
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	57, 98
BstDEI	CTNAG	3 cut(s)	159, 380, 447
BstDSI	CCRYGG	2 cut(s)	101, 417
BstFNI	CGCG	2 cut(s)	27, 41
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	2 cut(s)	41, 261
BstKTI	GATC	2 cut(s)	111, 139
BstMBI	GATC	2 cut(s)	108, 136
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 236, 267, 422
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	3 cut(s)	120, 132, 265
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	2 cut(s)	27, 41
BstV1I	GCAGC	3 cut(s)	214, 520, 559
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	442, 517
BtgI	CCRYGG	2 cut(s)	101, 417
BtsIMutI	CAGTG	2 cut(s)	195, 345
Cac8I	GCNNGC	2 cut(s)	57, 98
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	2 cut(s)	41, 261
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	5 cut(s)	77, 124, 440, 454, 565
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	23, 29, 34, 64
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	1 cut(s)	102
CviQI	GTAC	4 cut(s)	23, 29, 34, 64
DdeI	CTNAG	3 cut(s)	159, 380, 447
DpnI	GATC	2 cut(s)	110, 138
DpnII	GATC	2 cut(s)	108, 136
Eco130I	CCWWGG	1 cut(s)	101
Eco47I	GGWCC	4 cut(s)	77, 124, 454, 565
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	1 cut(s)	105
FaiI	YATR	3 cut(s)	103, 479, 486
FaqI	GGGAC	2 cut(s)	509, 551
FatI	CATG	1 cut(s)	101
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	3 cut(s)	228, 534, 573
Fsp4HI	GCNGC	3 cut(s)	228, 534, 573
GlaI	GCGC	2 cut(s)	40, 260
GluI	GCNGC	3 cut(s)	228, 534, 573
GsuI	CTGGAG	2 cut(s)	231, 380
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	442, 517
HapII	CCGG	3 cut(s)	20, 122, 134
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	2 cut(s)	41, 261
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	2 cut(s)	39, 259
HinP1I	GCGC	2 cut(s)	39, 259
HpaII	CCGG	3 cut(s)	20, 122, 134
HphI	GGTGA	2 cut(s)	230, 334
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	88, 210
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	272, 445
HpyCH4III	ACNGT	3 cut(s)	33, 68, 349
HpyCH4IV	ACGT	2 cut(s)	322, 465
HpyCH4V	TGCA	5 cut(s)	48, 59, 96, 190, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 236, 267, 422
HpyF3I	CTNAG	3 cut(s)	159, 380, 447
HpySE526I	ACGT	2 cut(s)	322, 465
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	2 cut(s)	39, 259
Kzo9I	GATC	2 cut(s)	108, 136
LmnI	GCTCC	3 cut(s)	224, 361, 422
Lsp1109I	GCAGC	3 cut(s)	214, 520, 559
MaeII	ACGT	2 cut(s)	322, 465
MaeIII	GTNAC	3 cut(s)	301, 316, 383
MalI	GATC	2 cut(s)	110, 138
MboI	GATC	2 cut(s)	108, 136
MboII	GAAGA	5 cut(s)	198, 225, 260, 286, 563
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	4 cut(s)	71, 398, 459, 537
MluI	ACGCGT	1 cut(s)	25
MnlI	CCTC	3 cut(s)	142, 206, 436
MseI	TTAA	3 cut(s)	144, 279, 435
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	3 cut(s)	20, 122, 134
MspR9I	CCNGG	3 cut(s)	122, 134, 267
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	2 cut(s)	27, 41
MwoI	GCNNNNNNNGC	4 cut(s)	45, 236, 267, 422
NciI	CCSGG	2 cut(s)	122, 134
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	108, 136
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	3 cut(s)	424, 441, 567
NmuCI	GTSAC	2 cut(s)	316, 383
OliI	CACNNNNGTG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	229, 535, 574
Ppu21I	YACGTR	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	3 cut(s)	424, 441, 567
PspPI	GGNCC	5 cut(s)	77, 124, 440, 454, 565
PspPPI	RGGWCCY	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	4 cut(s)	24, 30, 35, 65
RsaNI	GTAC	4 cut(s)	23, 29, 34, 64
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	3 cut(s)	144, 279, 435
SatI	GCNGC	3 cut(s)	228, 534, 573
Sau3AI	GATC	2 cut(s)	108, 136
Sau96I	GGNCC	5 cut(s)	77, 124, 440, 454, 565
ScaI	AGTACT	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	122, 134, 267
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	4 cut(s)	77, 124, 454, 565
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	4 cut(s)	71, 398, 459, 537
SsiI	CCGC	3 cut(s)	5, 41, 270
StyD4I	CCNGG	3 cut(s)	120, 132, 265
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	3 cut(s)	33, 68, 349
TaiI	ACGT	2 cut(s)	325, 468
TaqI	TCGA	1 cut(s)	87
TasI	AATT	4 cut(s)	71, 398, 459, 537
TatI	WGTACW	2 cut(s)	33, 63
Tru1I	TTAA	3 cut(s)	144, 279, 435
Tru9I	TTAA	3 cut(s)	144, 279, 435
TscAI	CASTG	2 cut(s)	202, 352
TseFI	GTSAC	2 cut(s)	316, 383
TseI	GCWGC	3 cut(s)	227, 533, 572
Tsp45I	GTSAC	2 cut(s)	316, 383
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	202, 352
VpaK11BI	GGWCC	4 cut(s)	77, 124, 454, 565
XapI	RAATTY	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.