Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013506

Physical Location & Seq

Genomic Coordinates Reverse (-)

16264071 .. 16267798

Gene Structure 3728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGCAAAACCATGGAAATACTTTCTTTCCTGCTTATCCGAAATCAATTACAGAACTGATGGGAAAATATTCAATTCTCCAAATAAATGGAAGCCTTCATAAGAGAGTGCATGGACTCATCGCTGGTTATCTGAAATCACCACAGTTCAAAGCTCGAATCACCGCCGACATCGAAAACTCAGTCAAGCTCAACCTGGCTCTTTGGAGAGACATGCAGTCTCCCATTTACGTCCAAGATGAAACCCAAAAGGCTAGAGAGCGATTGTTGAAGATGGTGGGTAAAATATTAGAGGTGAAAAAGATGGCAATGGAAAATACAAATTGTACCCAAAATACAATTCCAGTCAAAGACGCAATGGATGTGCTGTTACGTGAAGGTGGTGAACAAAACAACGAGACTCATGCCCTGCCGTTGGATTTCATCACCGGAAATATAATAGAGATGATGATCCCAGGAGAGGAGACTGTTCCCATGGCCATGACCCTAGCGGTCAAGTTCCTAAGTGACAGCCCTGTGGCGTTAGACAAATTACGGGTGATAAGTGAGACTCTTAGAATGGCAAATATCATCAATGCTGTTTGGAGAAAAGCTCAAAAGGATGTTGAAATCAAAGGTTATCTGATACCAAAAGGATCGTGTGTCTTGGCTTCTTTTACTTCTGTTCATATGGATGAAGAAAACTACAAAAACCCATATCAGTTTGATCCATGGAGATGGGAGAAATTAGAAGCTGCTGTAAACTACAACACTAGTTTTACACCATTTGGTGGAGGACAGAGGCTTTGCCCTGGTTTGGAGCTATCCAGGCTTGAATTATCAGTCTTTCTTCATCATCTTGTCACTAATTATAGGTATAAAAATTGTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009653 GO:0009791 GO:0009826 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010268 GO:0010817 GO:0016043 GO:0016049 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0022414 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042445 GO:0042446 GO:0042592 GO:0042814 GO:0044238 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048443 GO:0048465 GO:0048466 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0055088 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

290

Amino Acids

32.87

Weight (kDa)

8.53

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	179 - 286	2.3e-31	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36380 AT4G36380
fragaria_vesca	FvH4_1g12330
malus_domestica	MD02G1137700.v1.1 MD15G1251500.v1.1
prunus_persica	Prupe.7G162900_v2.0.a1
pyrus_communis	pycom02g10900 pycom15g22160
rosa_chinensis	RchiOBHm_Chr2g0100151
rosa_laevigata	RLG00000016941
rosa_multiflora	Rmu_sc0018554.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142520
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135100 Rh2BG138500 Rh2CG140300 Rh2DG140500
rosa_wichuraiana	Rw2G010540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	2 cut(s)	162, 488
AclWI	GGATC	3 cut(s)	442, 640, 698
AcoI	YGGCCR	1 cut(s)	474
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	4 cut(s)	412, 457, 767, 793
AgsI	TTSAA	5 cut(s)	72, 148, 268, 605, 812
AhdI	GACNNNNNGTC	1 cut(s)	214
AhlI	ACTAGT	1 cut(s)	749
AjnI	CCWGG	4 cut(s)	192, 451, 787, 803
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	5 cut(s)	152, 187, 590, 731, 799
AluI	AGCT	5 cut(s)	152, 187, 590, 731, 799
Alw26I	GTCTC	5 cut(s)	201, 222, 389, 455, 539
AlwI	GGATC	3 cut(s)	442, 640, 698
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	731
ArsI	GACNNNNNNTTYG	4 cut(s)	165, 197, 765, 797
Asp700I	GAANNNNTTC	1 cut(s)	67
AsuHPI	GGTGA	6 cut(s)	129, 151, 304, 392, 415, 547
BalI	TGGCCA	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	4 cut(s)	52, 265, 295, 708
BceAI	ACGGC	1 cut(s)	394
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	4 cut(s)	194, 453, 789, 805
BcoDI	GTCTC	5 cut(s)	201, 222, 389, 455, 539
BcuI	ACTAGT	1 cut(s)	749
BfaI	CTAG	3 cut(s)	252, 485, 750
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme1390I	CCNGG	4 cut(s)	194, 453, 789, 805
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmrFI	CCNGG	4 cut(s)	194, 453, 789, 805
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BsaAI	YACGTR	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	446
BsaJI	CCNNGG	5 cut(s)	10, 451, 471, 707, 787
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 457, 767, 793
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	312, 360
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	4 cut(s)	194, 453, 789, 805
BseDI	CCNNGG	5 cut(s)	10, 451, 471, 707, 787
BseGI	GGATG	3 cut(s)	364, 604, 676
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	412, 457, 767, 793
BseMI	GCAATG	2 cut(s)	312, 360
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	718
BshFI	GGCC	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	4 cut(s)	412, 457, 767, 793
BsmAI	GTCTC	5 cut(s)	201, 222, 389, 455, 539
BsnI	GGCC	1 cut(s)	476
Bsp143I	GATC	3 cut(s)	447, 632, 703
Bsp19I	CCATGG	3 cut(s)	10, 471, 707
BspACI	CCGC	2 cut(s)	162, 488
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	191
BspPI	GGATC	3 cut(s)	442, 640, 698
BsrDI	GCAATG	2 cut(s)	312, 360
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	5 cut(s)	10, 451, 471, 707, 787
BssMI	GATC	3 cut(s)	447, 632, 703
BssT1I	CCWWGG	3 cut(s)	10, 471, 707
Bst2UI	CCWGG	4 cut(s)	194, 453, 789, 805
Bst4CI	ACNGT	2 cut(s)	144, 466
BstBAI	YACGTR	1 cut(s)	371
BstDEI	CTNAG	3 cut(s)	178, 500, 551
BstDSI	CCRYGG	3 cut(s)	10, 471, 707
BstF5I	GGATG	3 cut(s)	364, 604, 676
BstKTI	GATC	3 cut(s)	450, 635, 706
BstMAI	GTCTC	5 cut(s)	201, 222, 389, 455, 539
BstMBI	GATC	3 cut(s)	447, 632, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	805
BstNI	CCWGG	4 cut(s)	194, 453, 789, 805
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	4 cut(s)	192, 451, 787, 803
BstV1I	GCAGC	1 cut(s)	718
BstXI	CCANNNNNNTGG	2 cut(s)	86, 714
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	3 cut(s)	10, 471, 707
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	3 cut(s)	364, 604, 676
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	7 cut(s)	11, 110, 211, 401, 472, 478, 708
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	178, 500, 551
DpnI	GATC	3 cut(s)	449, 634, 705
DpnII	GATC	3 cut(s)	447, 632, 703
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	214
Eco130I	CCWWGG	3 cut(s)	10, 471, 707
EcoRII	CCWGG	4 cut(s)	192, 451, 787, 803
EcoT14I	CCWWGG	3 cut(s)	10, 471, 707
ErhI	CCWWGG	3 cut(s)	10, 471, 707
FaeI	CATG	7 cut(s)	14, 113, 214, 404, 475, 481, 711
FatI	CATG	7 cut(s)	10, 109, 210, 400, 471, 477, 707
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	3 cut(s)	371, 611, 683
Fsp4HI	GCNGC	1 cut(s)	732
FspBI	CTAG	3 cut(s)	252, 485, 750
GluI	GCNGC	1 cut(s)	732
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	1 cut(s)	426
HgaI	GACGC	1 cut(s)	359
Hin1II	CATG	7 cut(s)	14, 113, 214, 404, 475, 481, 711
HinfI	GANTC	4 cut(s)	114, 156, 397, 547
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	6 cut(s)	129, 151, 304, 392, 415, 547
Hpy166II	GTNNAC	2 cut(s)	383, 739
Hpy188I	TCNGA	3 cut(s)	39, 132, 621
Hpy8I	GTNNAC	2 cut(s)	383, 739
HpyAV	CCTTC	2 cut(s)	104, 368
HpyCH4III	ACNGT	2 cut(s)	144, 466
HpyCH4IV	ACGT	2 cut(s)	228, 370
HpyCH4V	TGCA	3 cut(s)	4, 109, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	805
HpyF3I	CTNAG	3 cut(s)	178, 500, 551
HpySE526I	ACGT	2 cut(s)	228, 370
Hsp92II	CATG	7 cut(s)	14, 113, 214, 404, 475, 481, 711
Kzo9I	GATC	3 cut(s)	447, 632, 703
LmnI	GCTCC	1 cut(s)	796
Lsp1109I	GCAGC	1 cut(s)	718
MaeI	CTAG	3 cut(s)	252, 485, 750
MaeII	ACGT	2 cut(s)	228, 370
MaeIII	GTNAC	3 cut(s)	366, 503, 838
MalI	GATC	3 cut(s)	449, 634, 705
MboI	GATC	3 cut(s)	447, 632, 703
MboII	GAAGA	3 cut(s)	280, 686, 818
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	9 cut(s)	45, 72, 319, 336, 527, 722, 812, 844, 859
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	108, 391, 541
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	283, 451, 764, 771
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	67
MscI	TGGCCA	1 cut(s)	476
MslI	CAYNNNNRTG	3 cut(s)	476, 669, 712
Msp20I	TGGCCA	1 cut(s)	476
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	4 cut(s)	194, 453, 789, 805
MvaI	CCWGG	4 cut(s)	194, 453, 789, 805
MwoI	GCNNNNNNNGC	1 cut(s)	805
NcoI	CCATGG	3 cut(s)	10, 471, 707
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	3 cut(s)	447, 632, 703
NlaIII	CATG	7 cut(s)	14, 113, 214, 404, 475, 481, 711
NmuCI	GTSAC	2 cut(s)	503, 838
NspI	RCATGY	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	1 cut(s)	733
PleI	GAGTC	3 cut(s)	108, 391, 541
PpsI	GAGTC	3 cut(s)	108, 391, 541
Ppu21I	YACGTR	1 cut(s)	371
Psp6I	CCWGG	4 cut(s)	192, 451, 787, 803
PspGI	CCWGG	4 cut(s)	192, 451, 787, 803
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	3 cut(s)	476, 669, 712
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	3 cut(s)	447, 632, 703
SchI	GAGTC	3 cut(s)	108, 391, 541
ScrFI	CCNGG	4 cut(s)	194, 453, 789, 805
SmiMI	CAYNNNNRTG	3 cut(s)	476, 669, 712
SpeI	ACTAGT	1 cut(s)	749
Sse9I	AATT	9 cut(s)	45, 72, 319, 336, 527, 722, 812, 844, 859
SsiI	CCGC	2 cut(s)	162, 488
SspI	AATATT	2 cut(s)	68, 285
SspMI	CTAG	3 cut(s)	252, 485, 750
StyD4I	CCNGG	4 cut(s)	192, 451, 787, 803
StyI	CCWWGG	3 cut(s)	10, 471, 707
TaaI	ACNGT	2 cut(s)	144, 466
TaiI	ACGT	2 cut(s)	231, 373
TaqI	TCGA	2 cut(s)	154, 171
TasI	AATT	9 cut(s)	45, 72, 319, 336, 527, 722, 812, 844, 859
TfiI	GAWTC	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	503, 838
TseI	GCWGC	1 cut(s)	731
Tsp45I	GTSAC	2 cut(s)	503, 838
TspDTI	ATGAA	6 cut(s)	86, 252, 409, 653, 687, 818
Van91I	CCANNNNNTGG	1 cut(s)	767
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	3 cut(s)	252, 485, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.