Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003354

Physical Location & Seq

Genomic Coordinates Forward (+)

17723913 .. 17727380

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCCAGCTTTTCTTCTCCCGCTAAACCCCCCACGACCTGTTTTGCAGAGATTAAGGCGGTTTGGAGGGATGAGCGGTGGTGGAGGTAAAATGCTGGGATTAAGTGTGAAACAACACAAGCGTTCAAAAAGCTTTCCTGAGAAGAAAAGAGTGGAGGAAGATGATTTGGATAGTTCCGGTGAAGCATCAGACCTTGTAAAGCTGGATATGGGACAATTCAAGGGCCATGTTACGACCAAGAAGAAACAATCTCCTACCGTGGAAGTACACAACTCTTTAAAGCAAGAGATTCTACAGCTTGAGAAAAGATTACAAGATCAATTCGAGGTCCGTCATGCTTTAGAAAATGCATTGGGTTATAGGTCTTCCATCCATCATAATACAAATGCAAGTGTGATACCTAAGCCAGCTACAGAATTGATTAAGGAGATTGCTGTGTTAGAATTAGAAGTTGCCCATTTGGAACAATATCTTCTCTCGTTGTATAGGAGAGCATTTGATGGGAAATTTTCCTCTGTTTCCCCATCTAAGAAGGATGAACGACTAAAACCAACTCTAACAAGCCTAAGAAGCAGGTTCCTAGAAGTTTCTGAACCTGATATGCCATTGGAGAGGGAAAACTTGGCAGTTCAATCCAGTGGTCAGTCACTTGAAAATTCACAGAAGGAATTCAATGCAATTGGAGGAGAAGAGAAACTATTAGATTCCAGTGTTCACCGTTGCCACTCCTCACTTTCGCAACACTCTGCATTCTTAAGTAGAACTTCTCCAGAAGAGTCTTTGGCGAACACTTTGCGTTCCTGTCATTCTCAACCGTTGTCTATGATGGGGTATGCTCAGAATACTTCATCAAATTTAATTAGTCTGGCAGACCATCTTGGTACACGCATTGCTGATCATATTCCAGAGACACCTAACAGGCTTTCGGAGGACATGATCAAGTGCATGTCCACCATATATTGCAAGCTTTCGGAATCACCCTTGTCACATAATGGCCTTTCATCTCCCAATTCATCTTTGTCATCAACAAGTGCATTTTCACCGCGAGATCGATCTAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

355

Amino Acids

39.39

Weight (kDa)

8.55

Isoelectric Point (pI)

73.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600
fragaria_vesca	FvH4_1g14360 FvH4_1g14360 FvH4_1g14360
malus_domestica	MD02G1157100.v1.1 MD15G1271800.v1.1
prunus_persica	Prupe.7G146400_v2.0.a1
pyrus_communis	pycom02g12420 pycom15g23570
rosa_chinensis	RchiOBHm_Chr2g0103061
rosa_laevigata	RLG00000017202
rosa_multiflora	Rmu_co8442071.1_g000001 Rmu_sc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139960
rosa_rugosa	Rorug02G0111700 Rorug02G0111800 Rorug02G0111900
rosa_samantha	Rh2AG159900 Rh2BG166500 Rh2CG166700 Rh2DG165500
rosa_wichuraiana	Rw2G012510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	564
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	1 cut(s)	1045
AciI	CCGC	4 cut(s)	20, 58, 75, 1043
AcsI	RAATTY	4 cut(s)	506, 655, 668, 853
AfaI	GTAC	2 cut(s)	267, 883
AflII	CTTAAG	1 cut(s)	754
AgsI	TTSAA	5 cut(s)	126, 220, 632, 653, 673
AluBI	AGCT	6 cut(s)	8, 132, 202, 298, 410, 967
AluI	AGCT	6 cut(s)	8, 132, 202, 298, 410, 967
Alw26I	GTCTC	1 cut(s)	902
AoxI	GGCC	2 cut(s)	223, 994
ApoI	RAATTY	4 cut(s)	506, 655, 668, 853
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	2 cut(s)	223, 328
AsuHPI	GGTGA	4 cut(s)	191, 707, 969, 1032
AvaII	GGWCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	357
BccI	CCATC	6 cut(s)	377, 381, 494, 532, 820, 882
BcgI	CGANNNNNNTGC	2 cut(s)	775, 809
BclI	TGATCA	2 cut(s)	895, 936
BcoDI	GTCTC	1 cut(s)	902
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	2 cut(s)	293, 411
BfrI	CTTAAG	1 cut(s)	754
BfuAI	ACCTGC	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	223, 328
BmiI	GGNNCC	1 cut(s)	578
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	1051
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	636, 708
Bse3DI	GCAATG	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	1051
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	75, 369, 541
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	129, 851
BseNI	ACTGG	2 cut(s)	636, 708
BseRI	GAGGAG	2 cut(s)	699, 718
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	1045
BshFI	GGCC	2 cut(s)	225, 996
BshVI	ATCGAT	1 cut(s)	1051
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	2 cut(s)	225, 996
Bsp143I	GATC	5 cut(s)	316, 895, 936, 1048, 1052
BspACI	CCGC	4 cut(s)	20, 58, 75, 1043
BspANI	GGCC	2 cut(s)	225, 996
BspCNI	CTCAG	2 cut(s)	130, 850
BspDI	ATCGAT	1 cut(s)	1051
BspFNI	CGCG	1 cut(s)	1045
BspLI	GGNNCC	1 cut(s)	578
BspMI	ACCTGC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	754
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	2 cut(s)	636, 708
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	5 cut(s)	316, 895, 936, 1048, 1052
Bst4CI	ACNGT	3 cut(s)	259, 719, 816
Bst6I	CTCTTC	2 cut(s)	684, 768
BstAFI	CTTAAG	1 cut(s)	754
BstC8I	GCNNGC	3 cut(s)	6, 408, 965
BstDEI	CTNAG	5 cut(s)	138, 402, 528, 566, 837
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	3 cut(s)	75, 369, 541
BstFNI	CGCG	1 cut(s)	1045
BstKTI	GATC	5 cut(s)	319, 898, 939, 1051, 1055
BstMAI	GTCTC	1 cut(s)	902
BstMBI	GATC	5 cut(s)	316, 895, 936, 1048, 1052
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	949
BstSFI	CTRYAG	2 cut(s)	293, 411
BstUI	CGCG	1 cut(s)	1045
BstV2I	GAAGAC	1 cut(s)	357
Bsu15I	ATCGAT	1 cut(s)	1051
BsuRI	GGCC	2 cut(s)	225, 996
BsuTUI	ATCGAT	1 cut(s)	1051
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	75, 369, 541
BtsIMutI	CAGTG	2 cut(s)	643, 715
BveI	ACCTGC	1 cut(s)	564
Cac8I	GCNNGC	3 cut(s)	6, 408, 965
Cfr13I	GGNCC	2 cut(s)	223, 328
ClaI	ATCGAT	1 cut(s)	1051
Csp6I	GTAC	2 cut(s)	266, 882
CviAII	CATG	4 cut(s)	227, 335, 934, 946
CviQI	GTAC	2 cut(s)	266, 882
DdeI	CTNAG	5 cut(s)	138, 402, 528, 566, 837
DpnI	GATC	5 cut(s)	318, 897, 938, 1050, 1054
DpnII	GATC	5 cut(s)	316, 895, 936, 1048, 1052
DraI	TTTAAA	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	684, 768
EarI	CTCTTC	2 cut(s)	684, 768
Eco47I	GGWCC	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	668
EcoT22I	ATGCAT	1 cut(s)	352
FaeI	CATG	4 cut(s)	230, 338, 937, 949
FalI	AAGNNNNNCTT	2 cut(s)	748, 780
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	4 cut(s)	226, 334, 933, 945
FauI	CCCGC	1 cut(s)	27
FbaI	TGATCA	2 cut(s)	895, 936
FokI	GGATG	3 cut(s)	82, 356, 548
FspBI	CTAG	1 cut(s)	581
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	2 cut(s)	225, 996
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	4 cut(s)	230, 338, 937, 949
HindIII	AAGCTT	2 cut(s)	130, 965
HinfI	GANTC	4 cut(s)	289, 704, 776, 974
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	4 cut(s)	191, 707, 969, 1032
Hpy166II	GTNNAC	4 cut(s)	268, 715, 884, 951
Hpy188I	TCNGA	5 cut(s)	190, 592, 840, 928, 973
Hpy188III	TCNNGA	3 cut(s)	137, 770, 905
Hpy8I	GTNNAC	4 cut(s)	268, 715, 884, 951
HpyAV	CCTTC	2 cut(s)	526, 658
HpyCH4III	ACNGT	3 cut(s)	259, 719, 816
HpyCH4V	TGCA	8 cut(s)	46, 350, 389, 677, 749, 945, 963, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	5 cut(s)	138, 402, 528, 566, 837
Hsp92II	CATG	4 cut(s)	230, 338, 937, 949
Ksp22I	TGATCA	2 cut(s)	895, 936
Kzo9I	GATC	5 cut(s)	316, 895, 936, 1048, 1052
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	3 cut(s)	229, 645, 984
MalI	GATC	5 cut(s)	318, 897, 938, 1050, 1054
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	5 cut(s)	316, 895, 936, 1048, 1052
MboII	GAAGA	8 cut(s)	5, 154, 170, 253, 357, 464, 701, 785
MfeI	CAATTG	1 cut(s)	678
MlyI	GAGTC	1 cut(s)	785
MnlI	CCTC	9 cut(s)	59, 77, 148, 319, 523, 606, 677, 739, 922
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	668
MseI	TTAA	6 cut(s)	53, 101, 278, 423, 755, 857
MspCI	CTTAAG	1 cut(s)	754
MspI	CCGG	1 cut(s)	177
MunI	CAATTG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	749
MvnI	CGCG	1 cut(s)	1045
MwoI	GCNNNNNNNGC	1 cut(s)	570
NdeII	GATC	5 cut(s)	316, 895, 936, 1048, 1052
NlaIII	CATG	4 cut(s)	230, 338, 937, 949
NlaIV	GGNNCC	1 cut(s)	578
NmuCI	GTSAC	2 cut(s)	645, 984
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	949
PctI	GAATGC	1 cut(s)	749
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	3 cut(s)	289, 704, 974
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	578
PspPI	GGNCC	2 cut(s)	223, 328
RsaI	GTAC	2 cut(s)	267, 883
RsaNI	GTAC	2 cut(s)	266, 882
SaqAI	TTAA	6 cut(s)	53, 101, 278, 423, 755, 857
Sau3AI	GATC	5 cut(s)	316, 895, 936, 1048, 1052
Sau96I	GGNCC	2 cut(s)	223, 328
SchI	GAGTC	1 cut(s)	785
SfaNI	GCATC	1 cut(s)	194
SfcI	CTRYAG	2 cut(s)	293, 411
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	299, 754
SmoI	CTYRAG	2 cut(s)	299, 754
SsiI	CCGC	4 cut(s)	20, 58, 75, 1043
SspMI	CTAG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	259, 719, 816
TaqI	TCGA	2 cut(s)	324, 1051
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	3 cut(s)	289, 704, 974
Tru1I	TTAA	6 cut(s)	53, 101, 278, 423, 755, 857
Tru9I	TTAA	6 cut(s)	53, 101, 278, 423, 755, 857
TscAI	CASTG	2 cut(s)	643, 715
TseFI	GTSAC	2 cut(s)	645, 984
Tsp45I	GTSAC	2 cut(s)	645, 984
TspDTI	ATGAA	4 cut(s)	552, 837, 990, 1002
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	643, 715
Vha464I	CTTAAG	1 cut(s)	754
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	4 cut(s)	506, 655, 668, 853
XceI	RCATGY	1 cut(s)	949
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.