Rh2DG165500

Leucine-zipper of ternary complex factor MIP1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
14409270 .. 14416788
7519 bp
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UTR
Exon/CDS
Intron
Rh2DG165500.1

Sequence Viewer

Length: 1602 bp
ATGGAAAAGAAATCGTGTAGGGAGTGGTCTAGACATGGAATCAGAGAAATCAAATGTGGTCTTCTTCTATCCACATCTATTAATCCTTTTTGTTGCATTGGCAGCTTTCCTGATAAGAAAAGAGTGCAGGAAGATGACTTGGATAGTTCTCATGAAGCATCAGACCGTGTAAAGCTGGATTCGGCACAGTTCAAGGGCCGTGTTAGAACCAAGAAGAAACAATCTCATACCATGGAAGTTCACAATTCTTTGAAACAAGAGATTCTACAGCTTGAAAATAGATTACAAAATCAATTTCAGGTCCGCCATGCTTTAGAGAATGCATTGGGTTATAAGTCTTCCATCCATAACAATACTGTCAACACAAATGAAACTGCAATTCCTAAGCCAGCTACAGAATTGATTAAGGAGATTGCAGTGTTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCTCCTTGTACCGGAAAGCATTTGATGGACAATTGTCCTGTGTTTCCCCATGCAAAAAGGATGAAAAACTAAACTCACCTGTAACAACCCCAAGAAGCAACTTGCTGAAAGTTTTTGAACCTGACATGGCATTGAAGAGGGAAGATTTGGCAGTTCAATCTGGTAGTCAGTTGCTTGTAAATTCATGGAAGGAATATGTTGGAGAAGAAGAGAGGCCATTAGATTCTAGTGTTAACCGTTGCCACTCCTCACTGTCGCAACATTCTGCATTCGTAACTAGAACCTCTCCTCCAGAAGAGTCATTGGCGAAAGCTTTGCGTGCCTGTCATTCTCAACCATTGTCCATGATGGAGTATGCTCAGAGTACTTCATCAAATGTAATTAGTCTGGCAGAGCATCTCGGTACACGCATTTCCGATCATATTCAAGAGACGCCTAACAGGCTTTCGGAGGACATGATCAAGTGCATGTCCACTATATATTGCAAGCTTGCAGAACCCCCCTTGACACAGAATGGACTTTCATCTCCCAATTCATCTCTGTCATCAACAAGTGCCTTTTCTCCACACGAACAGAGTGAAATGTGGAGTCCGCAGTTCAAAAATAATTTATCTTTTGATGTACGATTGGATAATCCGTTTCTGGTGGAAGGACTTAAGGAATTTAGTGGGCCATACAGCACAATGGTTGAAGTGCCATGGATATATAGAGATACTAAAAAATTAGGTGATATTGAACACTTGCTACAACATTTCAGGTCACTTATCAGTCATTTAGAGGAAGTAGATCCTAGAAAGTTGAATAATGATGAGAAATTAGCGTTCTGGATTAATGTACACAATACTTTGGTCATGCATGCATATTTGGCTTATGGGGTTCCACAGAACAATGTAAAGAGGGTATATTTACTTTTGAAGGCTGCATATAACATAGGTGGCCACACAATCAGCGCAGATACAATGCAGAGCTCTATTCTTGGATGCCGAATGTCTCGTCCAGGACAGTGGCTCCGCTTGTTACTTACTCCGAGGAACAAGTTCAAGACTGGAGATGAACGCCAGGCCTATGCAATTGACCATCCAGAACCCCTTCTACATTTTGCACTTTGTTCAGGAAGCCATTCTGATCCTGCGGTACATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

60.37

Weight (kDa)

7.11

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 79 - 161 1.2e-25 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 417 - 531 3.9e-32 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AciI CCGC 4 cut(s) 304, 1049, 1468, 1589
AclWI GGATC 2 cut(s) 1238, 1577
AcoI YGGCCR 1 cut(s) 1393
AcsI RAATTY 2 cut(s) 637, 1118
AcyI GRCGYC 1 cut(s) 890
AfaI GTAC 6 cut(s) 467, 823, 862, 1080, 1293, 1593
AfiI CCNNNNNNNGG 1 cut(s) 468
AflII CTTAAG 1 cut(s) 1112
AjnI CCWGG 2 cut(s) 1453, 1515
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AloI GAACNNNNNNTCC 2 cut(s) 730, 762
AluBI AGCT 7 cut(s) 105, 175, 271, 392, 770, 946, 1425
AluI AGCT 7 cut(s) 105, 175, 271, 392, 770, 946, 1425
Alw21I GWGCWC 1 cut(s) 1427
Alw26I GTCTC 2 cut(s) 881, 1452
AlwI GGATC 2 cut(s) 1238, 1577
AoxI GGCC 5 cut(s) 196, 671, 1127, 1393, 1518
ApeKI GCWGC 2 cut(s) 102, 1376
ApoI RAATTY 2 cut(s) 637, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 1435, 1467
AseI ATTAAT 2 cut(s) 81, 1287
Asp700I GAANNNNTTC 3 cut(s) 1493, 1545, 1576
AspLEI GCGC 1 cut(s) 1409
AspS9I GGNCC 3 cut(s) 196, 301, 1127
AsuHPI GGTGA 2 cut(s) 525, 1196
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 1395
BanII GRGCYC 1 cut(s) 1427
BbsI GAAGAC 2 cut(s) 53, 330
Bbv12I GWGCWC 1 cut(s) 1427
BbvI GCAGC 2 cut(s) 114, 1363
BccI CCATC 4 cut(s) 350, 476, 799, 1542
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 2 cut(s) 1455, 1517
BclI TGATCA 1 cut(s) 915
BcoDI GTCTC 2 cut(s) 881, 1452
BfaI CTAG 4 cut(s) 30, 684, 735, 1248
BfmI CTRYAG 2 cut(s) 266, 393
BfrI CTTAAG 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 898
BisI GCNGC 2 cut(s) 103, 1377
BlsI GCNGC 2 cut(s) 104, 1378
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 2 cut(s) 1455, 1517
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 196, 301, 1127
BmiI GGNNCC 2 cut(s) 1335, 1466
BmrFI CCNGG 2 cut(s) 1455, 1517
BmsI GCATC 3 cut(s) 167, 862, 1427
BoxI GACNNNNGTC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 53, 330
BpmI CTGGAG 2 cut(s) 732, 1524
Bpu10I CCTNAGC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 231, 1154, 1484
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 4 cut(s) 730, 760, 1449, 1479
Bsc4I CCNNNNNNNGG 1 cut(s) 468
Bse1I ACTGG 1 cut(s) 1507
BseBI CCWGG 2 cut(s) 1455, 1517
BseDI CCNNGG 3 cut(s) 231, 1154, 1484
BseGI GGATG 4 cut(s) 342, 523, 1442, 1534
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 1 cut(s) 1507
BseRI GAGGAG 2 cut(s) 694, 735
BseXI GCAGC 2 cut(s) 114, 1363
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 5 cut(s) 198, 673, 1129, 1395, 1520
BsiHKAI GWGCWC 1 cut(s) 1427
BsiSI CCGG 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 881, 1452
BsmBI CGTCTC 1 cut(s) 881
BsmI GAATGC 2 cut(s) 325, 725
BsnI GGCC 5 cut(s) 198, 673, 1129, 1395, 1520
Bsp1286I GDGCHC 1 cut(s) 1427
Bsp1407I TGTACA 1 cut(s) 1291
Bsp143I GATC 4 cut(s) 874, 915, 1243, 1582
Bsp19I CCATGG 2 cut(s) 231, 1154
BspACI CCGC 4 cut(s) 304, 1049, 1468, 1589
BspANI GGCC 5 cut(s) 198, 673, 1129, 1395, 1520
BspCNI CTCAG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 1335, 1466
BspPI GGATC 2 cut(s) 1238, 1577
BspTI CTTAAG 1 cut(s) 1112
BsrGI TGTACA 1 cut(s) 1291
BsrI ACTGG 1 cut(s) 1507
BssECI CCNNGG 3 cut(s) 231, 1154, 1484
BssMI GATC 4 cut(s) 874, 915, 1243, 1582
BssNI GRCGYC 1 cut(s) 890
BssT1I CCWWGG 2 cut(s) 231, 1154
Bst2UI CCWGG 2 cut(s) 1455, 1517
Bst4CI ACNGT 7 cut(s) 167, 189, 358, 450, 695, 711, 1461
Bst6I CTCTTC 3 cut(s) 587, 660, 747
BstACI GRCGYC 1 cut(s) 890
BstAFI CTTAAG 1 cut(s) 1112
BstAUI TGTACA 1 cut(s) 1291
BstC8I GCNNGC 5 cut(s) 390, 777, 944, 948, 1314
BstDEI CTNAG 2 cut(s) 384, 816
BstDSI CCRYGG 2 cut(s) 231, 1154
BstF5I GGATG 4 cut(s) 342, 523, 1442, 1534
BstHHI GCGC 1 cut(s) 1409
BstKTI GATC 4 cut(s) 877, 918, 1246, 1585
BstMAI GTCTC 2 cut(s) 881, 1452
BstMBI GATC 4 cut(s) 874, 915, 1243, 1582
BstMWI GCNNNNNNNGC 4 cut(s) 102, 776, 898, 1322
BstNI CCWGG 2 cut(s) 1455, 1517
BstNSI RCATGY 2 cut(s) 928, 1316
BstPAI GACNNNNGTC 1 cut(s) 490
BstSCI CCNGG 2 cut(s) 1453, 1515
BstSFI CTRYAG 2 cut(s) 266, 393
BstV1I GCAGC 2 cut(s) 114, 1363
BstV2I GAAGAC 2 cut(s) 53, 330
BstX2I RGATCY 1 cut(s) 1243
BstXI CCANNNNNNTGG 1 cut(s) 1461
BstYI RGATCY 1 cut(s) 1243
BsuRI GGCC 5 cut(s) 198, 673, 1129, 1395, 1520
BtgI CCRYGG 2 cut(s) 231, 1154
BtsCI GGATG 4 cut(s) 342, 523, 1442, 1534
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 423, 707, 1466
Cac8I GCNNGC 5 cut(s) 390, 777, 944, 948, 1314
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 1409
Cfr13I GGNCC 3 cut(s) 196, 301, 1127
CseI GACGC 1 cut(s) 898
Csp6I GTAC 6 cut(s) 466, 822, 861, 1079, 1292, 1592
CviQI GTAC 6 cut(s) 466, 822, 861, 1079, 1292, 1592
DdeI CTNAG 2 cut(s) 384, 816
DpnI GATC 4 cut(s) 876, 917, 1245, 1584
DpnII GATC 4 cut(s) 874, 915, 1243, 1582
EaeI YGGCCR 1 cut(s) 1393
Eam1104I CTCTTC 3 cut(s) 587, 660, 747
EarI CTCTTC 3 cut(s) 587, 660, 747
EciI GGCGGA 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 1425
Eco130I CCWWGG 2 cut(s) 231, 1154
Eco147I AGGCCT 1 cut(s) 1520
Eco24I GRGCYC 1 cut(s) 1427
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 1425
EcoICRI GAGCTC 1 cut(s) 1425
EcoRII CCWGG 2 cut(s) 1453, 1515
EcoT14I CCWWGG 2 cut(s) 231, 1154
EcoT22I ATGCAT 3 cut(s) 325, 1314, 1318
EcoT38I GRGCYC 1 cut(s) 1427
ErhI CCWWGG 2 cut(s) 231, 1154
Esp3I CGTCTC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 103, 1377
FokI GGATG 4 cut(s) 329, 530, 1449, 1521
FriOI GRGCYC 1 cut(s) 1427
Fsp4HI GCNGC 2 cut(s) 103, 1377
FspBI CTAG 4 cut(s) 30, 684, 735, 1248
GlaI GCGC 1 cut(s) 1408
GluI GCNGC 2 cut(s) 103, 1377
GsuI CTGGAG 2 cut(s) 732, 1524
HaeIII GGCC 5 cut(s) 198, 673, 1129, 1395, 1520
HapII CCGG 1 cut(s) 469
HgaI GACGC 1 cut(s) 898
HhaI GCGC 1 cut(s) 1409
Hin1I GRCGYC 1 cut(s) 890
Hin6I GCGC 1 cut(s) 1407
HinP1I GCGC 1 cut(s) 1407
HincII GTYRAC 2 cut(s) 361, 691
HindII GTYRAC 2 cut(s) 361, 691
HindIII AAGCTT 2 cut(s) 768, 944
HinfI GANTC 6 cut(s) 39, 179, 262, 680, 755, 1045
HpaI GTTAAC 1 cut(s) 691
HpaII CCGG 1 cut(s) 469
HphI GGTGA 2 cut(s) 525, 1196
Hpy166II GTNNAC 6 cut(s) 241, 361, 691, 863, 930, 1294
Hpy188I TCNGA 7 cut(s) 44, 163, 819, 874, 907, 1485, 1582
Hpy188III TCNNGA 9 cut(s) 30, 110, 152, 749, 884, 1282, 1498, 1538, 1569
Hpy8I GTNNAC 6 cut(s) 241, 361, 691, 863, 930, 1294
HpyAV CCTTC 4 cut(s) 640, 1100, 1366, 1556
HpyCH4III ACNGT 7 cut(s) 167, 189, 358, 450, 695, 711, 1461
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 776, 898, 1322
HpyF3I CTNAG 2 cut(s) 384, 816
Hsp92I GRCGYC 1 cut(s) 890
HspAI GCGC 1 cut(s) 1407
Ksp22I TGATCA 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 4 cut(s) 874, 915, 1243, 1582
LmnI GCTCC 1 cut(s) 1470
Lsp1109I GCAGC 2 cut(s) 114, 1363
LweI GCATC 3 cut(s) 167, 862, 1427
MaeI CTAG 4 cut(s) 30, 684, 735, 1248
MaeIII GTNAC 4 cut(s) 538, 730, 1215, 1473
MalI GATC 4 cut(s) 876, 917, 1245, 1584
MboI GATC 4 cut(s) 874, 915, 1243, 1582
MfeI CAATTG 2 cut(s) 488, 1527
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 1 cut(s) 1427
MlsI TGGCCA 1 cut(s) 1395
MluNI TGGCCA 1 cut(s) 1395
MlyI GAGTC 2 cut(s) 764, 1054
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 9 cut(s) 588, 663, 715, 751, 756, 901, 1228, 1347, 1479
Mox20I TGGCCA 1 cut(s) 1395
Mph1103I ATGCAT 3 cut(s) 325, 1314, 1318
MroXI GAANNNNTTC 3 cut(s) 1493, 1545, 1576
MscI TGGCCA 1 cut(s) 1395
MseI TTAA 6 cut(s) 81, 405, 690, 1113, 1287, 1600
Msp20I TGGCCA 1 cut(s) 1395
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 1 cut(s) 469
MspR9I CCNGG 2 cut(s) 1455, 1517
MunI CAATTG 2 cut(s) 488, 1527
Mva1269I GAATGC 2 cut(s) 325, 725
MvaI CCWGG 2 cut(s) 1455, 1517
MwoI GCNNNNNNNGC 4 cut(s) 102, 776, 898, 1322
NcoI CCATGG 2 cut(s) 231, 1154
NdeII GATC 4 cut(s) 874, 915, 1243, 1582
NlaIV GGNNCC 2 cut(s) 1335, 1466
NmuCI GTSAC 1 cut(s) 1215
NsiI ATGCAT 3 cut(s) 325, 1314, 1318
NspI RCATGY 2 cut(s) 928, 1316
PaeI GCATGC 1 cut(s) 1316
PagI TCATGA 1 cut(s) 151
PceI AGGCCT 1 cut(s) 1520
PctI GAATGC 2 cut(s) 325, 725
PdmI GAANNNNTTC 3 cut(s) 1493, 1545, 1576
PfeI GAWTC 4 cut(s) 39, 179, 262, 680
PfoI TCCNGGA 1 cut(s) 1453
PkrI GCNGC 2 cut(s) 104, 1378
PleI GAGTC 2 cut(s) 763, 1053
PpsI GAGTC 2 cut(s) 763, 1053
PshAI GACNNNNGTC 1 cut(s) 490
PshBI ATTAAT 2 cut(s) 81, 1287
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 1427
Psp6I CCWGG 2 cut(s) 1453, 1515
PspGI CCWGG 2 cut(s) 1453, 1515
PspN4I GGNNCC 2 cut(s) 1335, 1466
PspPI GGNCC 3 cut(s) 196, 301, 1127
PsrI GAACNNNNNNTAC 4 cut(s) 1185, 1217, 1533, 1565
PsuI RGATCY 1 cut(s) 1243
RsaI GTAC 6 cut(s) 467, 823, 862, 1080, 1293, 1593
RsaNI GTAC 6 cut(s) 466, 822, 861, 1079, 1292, 1592
SacI GAGCTC 1 cut(s) 1427
SaqAI TTAA 6 cut(s) 81, 405, 690, 1113, 1287, 1600
SatI GCNGC 2 cut(s) 103, 1377
Sau3AI GATC 4 cut(s) 874, 915, 1243, 1582
Sau96I GGNCC 3 cut(s) 196, 301, 1127
ScaI AGTACT 1 cut(s) 823
SchI GAGTC 2 cut(s) 764, 1054
ScrFI CCNGG 2 cut(s) 1455, 1517
SduI GDGCHC 1 cut(s) 1427
SfaNI GCATC 3 cut(s) 167, 862, 1427
SfcI CTRYAG 2 cut(s) 266, 393
SinI GGWCC 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
SphI GCATGC 1 cut(s) 1316
SseBI AGGCCT 1 cut(s) 1520
SsiI CCGC 4 cut(s) 304, 1049, 1468, 1589
SspMI CTAG 4 cut(s) 30, 684, 735, 1248
SstI GAGCTC 1 cut(s) 1427
StuI AGGCCT 1 cut(s) 1520
StyD4I CCNGG 2 cut(s) 1453, 1515
StyI CCWWGG 2 cut(s) 231, 1154
TaaI ACNGT 7 cut(s) 167, 189, 358, 450, 695, 711, 1461
TatI WGTACW 2 cut(s) 821, 1291
TfiI GAWTC 4 cut(s) 39, 179, 262, 680
Tru1I TTAA 6 cut(s) 81, 405, 690, 1113, 1287, 1600
Tru9I TTAA 6 cut(s) 81, 405, 690, 1113, 1287, 1600
TscAI CASTG 3 cut(s) 423, 714, 1466
TseFI GTSAC 1 cut(s) 1215
TseI GCWGC 2 cut(s) 102, 1376
Tsp45I GTSAC 1 cut(s) 1215
TspDTI ATGAA 8 cut(s) 168, 384, 534, 630, 816, 969, 981, 1524
TspGWI ACGGA 1 cut(s) 1083
TspRI CASTG 3 cut(s) 423, 714, 1466
Vha464I CTTAAG 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 301
VspI ATTAAT 2 cut(s) 81, 1287
XapI RAATTY 2 cut(s) 637, 1118
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 2 cut(s) 928, 1316
XmnI GAANNNNTTC 3 cut(s) 1493, 1545, 1576
XspI CTAG 4 cut(s) 30, 684, 735, 1248
ZrmI AGTACT 1 cut(s) 823
Zsp2I ATGCAT 3 cut(s) 325, 1314, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.