Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442071.1

Orthogroup ID

OG0003354

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1285

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442071.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggcattgaagagggaagatttagcagttcaatctggtagtcagtcgcttgtaaattcatggaaggaatatgttggagaagaagagaggccattagattctagtgttaaccgttgccactcctcactttcacaacattctgcattcgtaactagaacctctcctccagaagagtcattggcgaaagctttgcgtgcctgtcattctcaaccattgtccatgatggagtatgctcagaatacttcatcaaatgtaattagtctggcagagcatctcggtacacgcatttccgatcatattcaagagacgcctaacaggctttcggaggacatgatcaagtgcatgtccactatatattgcaagcttgcggaacccccctcaacacagaatggactttcatctcccaattcatctctgtcatcaacgagtgccttttctccacacgaacagagtgaaatgtggagtccgcagttcaaaaataatttatcttttgatgtacgattggataatccgtttctggtggaaggactcaaggaatttagtgggccatacagcacaatggttgaagtgccatggatatatagagatactaaaaaattaggtgatattgaacacttgctacaacatttcaggtcacttatcagtcgtttagaggaagtagatcctagaaagttgaataatgatgagaaattagcgttctggattaatgtacacaatactttggtcatgcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

5.68

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600 AT5G66600
fragaria_vesca	FvH4_1g14360 FvH4_1g14360 FvH4_1g14360
malus_domestica	MD02G1157100.v1.1 MD15G1271800.v1.1
prunus_persica	Prupe.7G146400_v2.0.a1
pyrus_communis	pycom02g12420 pycom15g23570
rosa_chinensis	RchiOBHm_Chr2g0103061
rosa_laevigata	RLG00000017202
rosa_multiflora	Rmu_co8442071.1_g000001 Rmu_sc0000388.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139960
rosa_rugosa	Rorug02G0111700 Rorug02G0111800 Rorug02G0111900
rosa_samantha	Rh2AG159900 Rh2BG166500 Rh2CG166700 Rh2DG165500
rosa_wichuraiana	Rw2G012510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	368, 467
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	2 cut(s)	55, 536
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	3 cut(s)	280, 498, 711
AgsI	TTSAA	7 cut(s)	10, 32, 302, 475, 566, 611, 676
AloI	GAACNNNNNNTCC	2 cut(s)	148, 180
AluBI	AGCT	2 cut(s)	188, 364
AluI	AGCT	2 cut(s)	188, 364
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	2 cut(s)	89, 545
ApoI	RAATTY	2 cut(s)	55, 536
AseI	ATTAAT	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	614
BccI	CCATC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	102, 153, 666
BglI	GCCNNNNNGGC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
BseDI	CCNNGG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	112, 153
BshFI	GGCC	2 cut(s)	91, 547
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	91, 547
Bsp1407I	TGTACA	1 cut(s)	709
Bsp143I	GATC	3 cut(s)	292, 333, 661
Bsp19I	CCATGG	1 cut(s)	572
BspACI	CCGC	2 cut(s)	368, 467
BspANI	GGCC	2 cut(s)	91, 547
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	656
BsrGI	TGTACA	1 cut(s)	709
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	3 cut(s)	292, 333, 661
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	3 cut(s)	5, 78, 165
BstACI	GRCGYC	1 cut(s)	308
BstAUI	TGTACA	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	195, 362, 366
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	572
BstKTI	GATC	3 cut(s)	295, 336, 664
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	3 cut(s)	292, 333, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 316
BstNSI	RCATGY	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	91, 547
BtgI	CCRYGG	1 cut(s)	572
Cac8I	GCNNGC	3 cut(s)	195, 362, 366
Cfr13I	GGNCC	1 cut(s)	545
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	3 cut(s)	279, 497, 710
CviAII	CATG	6 cut(s)	60, 220, 331, 343, 573, 727
CviJI	RGCY	5 cut(s)	91, 188, 319, 364, 547
CviKI_1	RGCY	5 cut(s)	91, 188, 319, 364, 547
CviQI	GTAC	3 cut(s)	279, 497, 710
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	3 cut(s)	294, 335, 663
DpnII	GATC	3 cut(s)	292, 333, 661
Eam1104I	CTCTTC	3 cut(s)	5, 78, 165
EarI	CTCTTC	3 cut(s)	5, 78, 165
Eco130I	CCWWGG	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	572
EcoT22I	ATGCAT	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	572
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	6 cut(s)	63, 223, 334, 346, 576, 730
FatI	CATG	6 cut(s)	59, 219, 330, 342, 572, 726
FbaI	TGATCA	1 cut(s)	333
FspBI	CTAG	3 cut(s)	102, 153, 666
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	91, 547
HgaI	GACGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	6 cut(s)	63, 223, 334, 346, 576, 730
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	186, 362
HinfI	GANTC	4 cut(s)	98, 173, 463, 528
HpaI	GTTAAC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	4 cut(s)	109, 281, 348, 712
Hpy188I	TCNGA	3 cut(s)	237, 292, 325
Hpy188III	TCNNGA	3 cut(s)	167, 302, 700
Hpy8I	GTNNAC	4 cut(s)	109, 281, 348, 712
HpyAV	CCTTC	2 cut(s)	58, 518
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	143, 342, 360, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 316
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	6 cut(s)	63, 223, 334, 346, 576, 730
Ksp22I	TGATCA	1 cut(s)	333
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	292, 333, 661
LpnPI	CCDG	8 cut(s)	21, 180, 211, 248, 301, 503, 616, 685
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	102, 153, 666
MaeIII	GTNAC	2 cut(s)	148, 633
MalI	GATC	3 cut(s)	294, 335, 663
MboI	GATC	3 cut(s)	292, 333, 661
MboII	GAAGA	5 cut(s)	22, 29, 92, 95, 182
MflI	RGATCY	1 cut(s)	661
MluCI	AATT	7 cut(s)	55, 255, 406, 481, 536, 596, 689
MlyI	GAGTC	3 cut(s)	182, 472, 522
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	6, 81, 133, 169, 174, 319, 388, 646
Mph1103I	ATGCAT	1 cut(s)	732
MseI	TTAA	2 cut(s)	108, 705
Mva1269I	GAATGC	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	194, 316
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	3 cut(s)	292, 333, 661
NlaIII	CATG	6 cut(s)	63, 223, 334, 346, 576, 730
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	633
NsiI	ATGCAT	1 cut(s)	732
NspI	RCATGY	1 cut(s)	346
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	98
PleI	GAGTC	3 cut(s)	181, 471, 522
PpsI	GAGTC	3 cut(s)	181, 471, 522
PshBI	ATTAAT	1 cut(s)	705
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	3 cut(s)	280, 498, 711
RsaNI	GTAC	3 cut(s)	279, 497, 710
SaqAI	TTAA	2 cut(s)	108, 705
Sau3AI	GATC	3 cut(s)	292, 333, 661
Sau96I	GGNCC	1 cut(s)	545
SchI	GAGTC	3 cut(s)	182, 472, 522
SetI	ASST	5 cut(s)	161, 190, 366, 604, 635
SfaNI	GCATC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	530
SmoI	CTYRAG	1 cut(s)	530
Sse9I	AATT	7 cut(s)	55, 255, 406, 481, 536, 596, 689
SsiI	CCGC	2 cut(s)	368, 467
SspMI	CTAG	3 cut(s)	102, 153, 666
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	113
TasI	AATT	7 cut(s)	55, 255, 406, 481, 536, 596, 689
TatI	WGTACW	1 cut(s)	709
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	108, 705
Tru9I	TTAA	2 cut(s)	108, 705
TseFI	GTSAC	1 cut(s)	633
Tsp45I	GTSAC	1 cut(s)	633
TspDTI	ATGAA	4 cut(s)	48, 234, 387, 399
TspGWI	ACGGA	1 cut(s)	501
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	2 cut(s)	55, 536
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	3 cut(s)	102, 153, 666
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.