Rh2BG166500

Leucine-zipper of ternary complex factor MIP1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
14693830 .. 14701348
7519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG166500.1

Sequence Viewer

Length: 1485 bp
ATGGAAAAGAAATCGTGTAGGGAGTGGTCTAGACATGGAATCAGAGAAATCAAATGTGGTCTTCTTCTATCCACATCTATTAATCCTTTTTGTTGCATTGGCAGCTTTCCTGATAAGAAAAGAGTGCAGGAAGATGACTTGGATAGTTCTCATGAAGCATCAGACCGTGTAAAGCTGGATTCGGCACAGTTCAAGGGCCGTGTTAGAACCAAGAAGAAACAATCTCATACCATGGAAGTTCACAATTCTTTGAAACAAGAGATTCTACAGCTTGAAAATAGATTACAAAATCAATTTCAGGTCCGCCATGCTTTAGAGAATGCATTGGGTTATAAGTCTTCCATCCATAACAATACTGTCAACACAAATGAAACTGCAATTCCTAAGCCAGCTACAGAATTGATTAAGGAGATTGCAGTGTTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCTCCTTGTACCGGAAAGCATTTGATGGACAATTGTCCTGTGTTTCCCCATGCAAAAAGGATGAAAAACTAAACTCACCTGTAACAACCCCAAGAAGCAACTTGCTGAAAGTTTTTGAACCTGACATGGCATTGAAGAGGGAAGATTTGGCAGTTCAATCTGGTAGTCAGTTGCTTGTAAATTCATGGAAGGAATATGTTGGAGAAGAAGAGAGGCCATTAGATTCTAGTGTTAACCGTTGCCACTCCTCACTGTCGCAACATTCTGCATTCGTAACTAGAACCTCTCCTCCAGAAGAGTCATTGGCGAAAGCTTTGCGTGCCTGTCATTCTCAACCATTGTCCATGATGGAGTATGCTCAGAGTACTTCATCAAATGTAATTAGTCTGGCAGAGCATCTCGGTACACGCATTTCCGATCATATTCAAGAGACGCCTAACAGGCTTTCGGAGGACATGATCAAGTGCATGTCCACTATATATTGCAAGCTTGCAGAACCCCCCTTGACACAGAATGGACTTTCATCTCCCAATTCATCTCTGTCATCAACAAGTGCCTTTTCTCCACACGAACAGAGTGAAATGTGGAGTCCGCAGTTCAAAAATAATTTATCTTTTGATGTACGATTGGATAATCCGTTTCTGGTGGAAGGACTTAAGGAATTTAGTGGGCCATACAGCACAATGGTTGAAGTGCCATGGATATATAGAGATACTAAAAAATTAGGTGATATTGAACACTTGCTACAACATTTCAGGTCACTTATCAGTCATTTAGAGGAAGTAGATCCTAGAAAGTTGAATAATGATGAGAAATTAGCGTTCTGGATTAATGTACACAATACTTTGGTCATGCATGCATATTTGGCTTATGGGGTTCCACAGAACAATGTAAAGAGGGTATATTTACTTTTGAAGGCTGCATATAACATAGGTGGCCACACAATCAGCGCAGATACAATGCAGAGCTCTATTCTTGGATGCCGAATGTCTCGTCCAGGACAGGTGGAATCTACTAAAACACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

494

Amino Acids

55.87

Weight (kDa)

7.03

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 79 - 161 1.1e-25 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 417 - 482 1.2e-20 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AciI CCGC 2 cut(s) 304, 1049
AclWI GGATC 1 cut(s) 1238
AcoI YGGCCR 1 cut(s) 1393
AcsI RAATTY 2 cut(s) 637, 1118
AcyI GRCGYC 1 cut(s) 890
AfaI GTAC 5 cut(s) 467, 823, 862, 1080, 1293
AfiI CCNNNNNNNGG 1 cut(s) 468
AflII CTTAAG 1 cut(s) 1112
AjnI CCWGG 1 cut(s) 1453
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AloI GAACNNNNNNTCC 2 cut(s) 730, 762
AluBI AGCT 7 cut(s) 105, 175, 271, 392, 770, 946, 1425
AluI AGCT 7 cut(s) 105, 175, 271, 392, 770, 946, 1425
Alw21I GWGCWC 1 cut(s) 1427
Alw26I GTCTC 2 cut(s) 881, 1452
AlwI GGATC 1 cut(s) 1238
AoxI GGCC 4 cut(s) 196, 671, 1127, 1393
ApeKI GCWGC 2 cut(s) 102, 1376
ApoI RAATTY 2 cut(s) 637, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 1435, 1467
AseI ATTAAT 2 cut(s) 81, 1287
AspLEI GCGC 1 cut(s) 1409
AspS9I GGNCC 3 cut(s) 196, 301, 1127
AsuHPI GGTGA 2 cut(s) 525, 1196
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 1395
BanII GRGCYC 1 cut(s) 1427
BbsI GAAGAC 2 cut(s) 53, 330
Bbv12I GWGCWC 1 cut(s) 1427
BbvI GCAGC 2 cut(s) 114, 1363
BccI CCATC 3 cut(s) 350, 476, 799
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 1 cut(s) 1455
BclI TGATCA 1 cut(s) 915
BcoDI GTCTC 2 cut(s) 881, 1452
BfaI CTAG 4 cut(s) 30, 684, 735, 1248
BfmI CTRYAG 2 cut(s) 266, 393
BfrI CTTAAG 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 898
BisI GCNGC 2 cut(s) 103, 1377
BlsI GCNGC 2 cut(s) 104, 1378
BmcAI AGTACT 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 1455
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 196, 301, 1127
BmiI GGNNCC 1 cut(s) 1335
BmrFI CCNGG 1 cut(s) 1455
BmsI GCATC 3 cut(s) 167, 862, 1427
BoxI GACNNNNGTC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 53, 330
BpmI CTGGAG 1 cut(s) 732
Bpu10I CCTNAGC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 890
BsaJI CCNNGG 2 cut(s) 231, 1154
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 2 cut(s) 730, 760
Bsc4I CCNNNNNNNGG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 1455
BseDI CCNNGG 2 cut(s) 231, 1154
BseGI GGATG 3 cut(s) 342, 523, 1442
BseLI CCNNNNNNNGG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 830
BseRI GAGGAG 2 cut(s) 694, 735
BseXI GCAGC 2 cut(s) 114, 1363
BsgI GTGCAG 1 cut(s) 146
BshFI GGCC 4 cut(s) 198, 673, 1129, 1395
BsiHKAI GWGCWC 1 cut(s) 1427
BsiSI CCGG 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 881, 1452
BsmBI CGTCTC 1 cut(s) 881
BsmI GAATGC 2 cut(s) 325, 725
BsnI GGCC 4 cut(s) 198, 673, 1129, 1395
Bsp1286I GDGCHC 1 cut(s) 1427
Bsp1407I TGTACA 1 cut(s) 1291
Bsp143I GATC 3 cut(s) 874, 915, 1243
Bsp19I CCATGG 2 cut(s) 231, 1154
BspACI CCGC 2 cut(s) 304, 1049
BspANI GGCC 4 cut(s) 198, 673, 1129, 1395
BspCNI CTCAG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 1335
BspPI GGATC 1 cut(s) 1238
BspTI CTTAAG 1 cut(s) 1112
BsrGI TGTACA 1 cut(s) 1291
BssECI CCNNGG 2 cut(s) 231, 1154
BssMI GATC 3 cut(s) 874, 915, 1243
BssNI GRCGYC 1 cut(s) 890
BssT1I CCWWGG 2 cut(s) 231, 1154
Bst2UI CCWGG 1 cut(s) 1455
Bst4CI ACNGT 6 cut(s) 167, 189, 358, 450, 695, 711
Bst6I CTCTTC 3 cut(s) 587, 660, 747
BstACI GRCGYC 1 cut(s) 890
BstAFI CTTAAG 1 cut(s) 1112
BstAUI TGTACA 1 cut(s) 1291
BstC8I GCNNGC 5 cut(s) 390, 777, 944, 948, 1314
BstDEI CTNAG 2 cut(s) 384, 816
BstDSI CCRYGG 2 cut(s) 231, 1154
BstF5I GGATG 3 cut(s) 342, 523, 1442
BstHHI GCGC 1 cut(s) 1409
BstKTI GATC 3 cut(s) 877, 918, 1246
BstMAI GTCTC 2 cut(s) 881, 1452
BstMBI GATC 3 cut(s) 874, 915, 1243
BstMWI GCNNNNNNNGC 4 cut(s) 102, 776, 898, 1322
BstNI CCWGG 1 cut(s) 1455
BstNSI RCATGY 2 cut(s) 928, 1316
BstPAI GACNNNNGTC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 1453
BstSFI CTRYAG 2 cut(s) 266, 393
BstV1I GCAGC 2 cut(s) 114, 1363
BstV2I GAAGAC 2 cut(s) 53, 330
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
BsuRI GGCC 4 cut(s) 198, 673, 1129, 1395
BtgI CCRYGG 2 cut(s) 231, 1154
BtsCI GGATG 3 cut(s) 342, 523, 1442
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 423, 707
Cac8I GCNNGC 5 cut(s) 390, 777, 944, 948, 1314
CciI TCATGA 1 cut(s) 151
CfoI GCGC 1 cut(s) 1409
Cfr13I GGNCC 3 cut(s) 196, 301, 1127
CseI GACGC 1 cut(s) 898
Csp6I GTAC 5 cut(s) 466, 822, 861, 1079, 1292
CviQI GTAC 5 cut(s) 466, 822, 861, 1079, 1292
DdeI CTNAG 2 cut(s) 384, 816
DpnI GATC 3 cut(s) 876, 917, 1245
DpnII GATC 3 cut(s) 874, 915, 1243
EaeI YGGCCR 1 cut(s) 1393
Eam1104I CTCTTC 3 cut(s) 587, 660, 747
EarI CTCTTC 3 cut(s) 587, 660, 747
EciI GGCGGA 1 cut(s) 293
Ecl136II GAGCTC 1 cut(s) 1425
Eco130I CCWWGG 2 cut(s) 231, 1154
Eco24I GRGCYC 1 cut(s) 1427
Eco47I GGWCC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 1425
EcoICRI GAGCTC 1 cut(s) 1425
EcoRII CCWGG 1 cut(s) 1453
EcoT14I CCWWGG 2 cut(s) 231, 1154
EcoT22I ATGCAT 3 cut(s) 325, 1314, 1318
EcoT38I GRGCYC 1 cut(s) 1427
ErhI CCWWGG 2 cut(s) 231, 1154
Esp3I CGTCTC 1 cut(s) 881
FbaI TGATCA 1 cut(s) 915
Fnu4HI GCNGC 2 cut(s) 103, 1377
FokI GGATG 3 cut(s) 329, 530, 1449
FriOI GRGCYC 1 cut(s) 1427
Fsp4HI GCNGC 2 cut(s) 103, 1377
FspBI CTAG 4 cut(s) 30, 684, 735, 1248
GlaI GCGC 1 cut(s) 1408
GluI GCNGC 2 cut(s) 103, 1377
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 4 cut(s) 198, 673, 1129, 1395
HapII CCGG 1 cut(s) 469
HgaI GACGC 1 cut(s) 898
HhaI GCGC 1 cut(s) 1409
Hin1I GRCGYC 1 cut(s) 890
Hin6I GCGC 1 cut(s) 1407
HinP1I GCGC 1 cut(s) 1407
HincII GTYRAC 2 cut(s) 361, 691
HindII GTYRAC 2 cut(s) 361, 691
HindIII AAGCTT 2 cut(s) 768, 944
HinfI GANTC 7 cut(s) 39, 179, 262, 680, 755, 1045, 1466
HpaI GTTAAC 1 cut(s) 691
HpaII CCGG 1 cut(s) 469
HphI GGTGA 2 cut(s) 525, 1196
Hpy166II GTNNAC 6 cut(s) 241, 361, 691, 863, 930, 1294
Hpy188I TCNGA 5 cut(s) 44, 163, 819, 874, 907
Hpy188III TCNNGA 6 cut(s) 30, 110, 152, 749, 884, 1282
Hpy8I GTNNAC 6 cut(s) 241, 361, 691, 863, 930, 1294
HpyAV CCTTC 3 cut(s) 640, 1100, 1366
HpyCH4III ACNGT 6 cut(s) 167, 189, 358, 450, 695, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 776, 898, 1322
HpyF3I CTNAG 2 cut(s) 384, 816
Hsp92I GRCGYC 1 cut(s) 890
HspAI GCGC 1 cut(s) 1407
Ksp22I TGATCA 1 cut(s) 915
KspAI GTTAAC 1 cut(s) 691
Kzo9I GATC 3 cut(s) 874, 915, 1243
Lsp1109I GCAGC 2 cut(s) 114, 1363
LweI GCATC 3 cut(s) 167, 862, 1427
MaeI CTAG 4 cut(s) 30, 684, 735, 1248
MaeIII GTNAC 3 cut(s) 538, 730, 1215
MalI GATC 3 cut(s) 876, 917, 1245
MboI GATC 3 cut(s) 874, 915, 1243
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 1 cut(s) 1427
MlsI TGGCCA 1 cut(s) 1395
MluNI TGGCCA 1 cut(s) 1395
MlyI GAGTC 2 cut(s) 764, 1054
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 8 cut(s) 588, 663, 715, 751, 756, 901, 1228, 1347
Mox20I TGGCCA 1 cut(s) 1395
Mph1103I ATGCAT 3 cut(s) 325, 1314, 1318
MscI TGGCCA 1 cut(s) 1395
MseI TTAA 5 cut(s) 81, 405, 690, 1113, 1287
Msp20I TGGCCA 1 cut(s) 1395
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 1 cut(s) 469
MspR9I CCNGG 1 cut(s) 1455
MunI CAATTG 1 cut(s) 488
Mva1269I GAATGC 2 cut(s) 325, 725
MvaI CCWGG 1 cut(s) 1455
MwoI GCNNNNNNNGC 4 cut(s) 102, 776, 898, 1322
NcoI CCATGG 2 cut(s) 231, 1154
NdeII GATC 3 cut(s) 874, 915, 1243
NlaIV GGNNCC 1 cut(s) 1335
NmuCI GTSAC 1 cut(s) 1215
NsiI ATGCAT 3 cut(s) 325, 1314, 1318
NspI RCATGY 2 cut(s) 928, 1316
PaeI GCATGC 1 cut(s) 1316
PagI TCATGA 1 cut(s) 151
PctI GAATGC 2 cut(s) 325, 725
PfeI GAWTC 5 cut(s) 39, 179, 262, 680, 1466
PfoI TCCNGGA 1 cut(s) 1453
PkrI GCNGC 2 cut(s) 104, 1378
PleI GAGTC 2 cut(s) 763, 1053
PpsI GAGTC 2 cut(s) 763, 1053
PshAI GACNNNNGTC 1 cut(s) 490
PshBI ATTAAT 2 cut(s) 81, 1287
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 1 cut(s) 1427
Psp6I CCWGG 1 cut(s) 1453
PspGI CCWGG 1 cut(s) 1453
PspN4I GGNNCC 1 cut(s) 1335
PspPI GGNCC 3 cut(s) 196, 301, 1127
PsrI GAACNNNNNNTAC 2 cut(s) 1185, 1217
PsuI RGATCY 1 cut(s) 1243
RsaI GTAC 5 cut(s) 467, 823, 862, 1080, 1293
RsaNI GTAC 5 cut(s) 466, 822, 861, 1079, 1292
SacI GAGCTC 1 cut(s) 1427
SaqAI TTAA 5 cut(s) 81, 405, 690, 1113, 1287
SatI GCNGC 2 cut(s) 103, 1377
Sau3AI GATC 3 cut(s) 874, 915, 1243
Sau96I GGNCC 3 cut(s) 196, 301, 1127
ScaI AGTACT 1 cut(s) 823
SchI GAGTC 2 cut(s) 764, 1054
ScrFI CCNGG 1 cut(s) 1455
SduI GDGCHC 1 cut(s) 1427
SfaNI GCATC 3 cut(s) 167, 862, 1427
SfcI CTRYAG 2 cut(s) 266, 393
SinI GGWCC 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
SphI GCATGC 1 cut(s) 1316
SsiI CCGC 2 cut(s) 304, 1049
SspMI CTAG 4 cut(s) 30, 684, 735, 1248
SstI GAGCTC 1 cut(s) 1427
StyD4I CCNGG 1 cut(s) 1453
StyI CCWWGG 2 cut(s) 231, 1154
TaaI ACNGT 6 cut(s) 167, 189, 358, 450, 695, 711
TatI WGTACW 2 cut(s) 821, 1291
TfiI GAWTC 5 cut(s) 39, 179, 262, 680, 1466
Tru1I TTAA 5 cut(s) 81, 405, 690, 1113, 1287
Tru9I TTAA 5 cut(s) 81, 405, 690, 1113, 1287
TscAI CASTG 2 cut(s) 423, 714
TseFI GTSAC 1 cut(s) 1215
TseI GCWGC 2 cut(s) 102, 1376
Tsp45I GTSAC 1 cut(s) 1215
TspDTI ATGAA 7 cut(s) 168, 384, 534, 630, 816, 969, 981
TspGWI ACGGA 1 cut(s) 1083
TspRI CASTG 2 cut(s) 423, 714
Vha464I CTTAAG 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 301
VspI ATTAAT 2 cut(s) 81, 1287
XapI RAATTY 2 cut(s) 637, 1118
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 2 cut(s) 928, 1316
XspI CTAG 4 cut(s) 30, 684, 735, 1248
ZrmI AGTACT 1 cut(s) 823
Zsp2I ATGCAT 3 cut(s) 325, 1314, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.