Rroxscaffold_2G00139960

Leucine-zipper of ternary complex factor MIP1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
78216950 .. 78223481
6532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139960.1

Sequence Viewer

Length: 1590 bp
ATGGGGTTTGAGGTGAATGGTGATGGTAAAATGCTGGGATTATTGAGAGTGAATCCAAGGCACAAGCGTTCGAAAAGATTTTGGTATTGTGTACTTGGTGATGATCTTAAACTGGGTACACTTTCTGAGATGGCTTGTTGGGAAAAATGGGAACCTGAGCTTTCACAGCTATACCTTCTTTGTCAATTAGCAACACTGATAAGACGTAGTAGAAGCTTTCCTGATAAGAAAAGAGTGCAGGAAGATGACTTGGATAGTTCTCATGAAGCATCAGACCGTGTAAAGCTGGATTTGTCACAGTTCAAGGGCCATGTTAGAACCAAGAAGAAACAATCTCCTACCATGGAAGTTCACAATTCTTTGAAACAAGAGCCACCTACAGAATTGATTAAGGAGATTGCAGTGTTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCTCCTTGTACCGGAAAGCATTTGATGGACAATTGCCCTGTGTTTCACCATGCAAAAAGGATGAAAAACTAAACTCACCTGTAACAACCCCAAGAAGCAACTTGCTGAAAGTTTTTGAACCTGACATGGCATTGAAGAGGGAAGATTTAGCAGTTCAATCTGGTAGTCAGTCTCTTGTAAATTCATGGAAGGAATATGTTGGAGAAGAAGAGAGGCCATTAGATTCTAGTGTGAACCGTTGCCACTCCTCACTTTCGCAACATTCTGCATTCGTAACTAGAACCTCTCCTCCAGAAGAGTCATTGGCGAAAGCTTTGCGTGCCTGTCATTCTCAACCGTTGTCCATGATGGAGTATGCTCAGAATACTTCATCAAATGTAATTAGTCTGGCAGAGCATCTCGGTACACGCATTTCCGATCATATTCAAGAGACGCCTAACAGGCTTTCGGAGGACATGATCAAGTCACTTATCAGTCGTTTAGAGGAAGTAGATCCCAGAAAGTTGAATAATGATGAGAAATTAGCGTTCTGGATTAATGTACACAATACTTTGGTCATGCATGCATATTTGGCTTATGGGGTTCCACAGAACAATGTAAAGAGGGTATATTTACTTTTGAAGGCTGCATATAACATAGGTGGCCACACAATCAGCGCAGATACAATGCAGAGCTCTATTCTTGGATGCCGAATGTCTCGTCCAGGACAGTGGCTCCGCTTGTTACTTACTCCGAGGAACAAGTTCAAGACTGGAGATGAACGCCAGGCCTATGCAATTGACCATCCAGAACCACTTCTACATTTTGCACTTTGTTCAGGAAGCCATTCTGATCCTGCGGTTCGTGTATACACACCAAAGAGATTATCTCAGGAGCTGGAAGCTGCAAAAGAGGAGTATGTTCGAGCTACCTTTGGTGTGCGCAAGGACCACAAAATTCTTCTGCCAAAGATTGTCGAATCATTTGCAAAGAGCTCAGATTTGTGTCCTGGTGGTGTTTTGGAGATGATACAACGGTCATTGCCTGAATCTCTGAGGAAGAGTGTTAAGAAATGCCAGCAGGCTGGGAAATCACGGAAGAGCATAATCGAGTGGATTCCTCACAATTTCACTTTCCGGTATCTAATTTCTAAAGAGCTTGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

60.3

Weight (kDa)

9.02

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 117 - 156 3.7e-09 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 314 - 448 1.9e-41 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1364
AccI GTMKAC 1 cut(s) 1290
AciI CCGC 2 cut(s) 1159, 1280
AclWI GGATC 2 cut(s) 929, 1268
AcoI YGGCCR 1 cut(s) 1084
AcsI RAATTY 2 cut(s) 622, 1377
AcyI GRCGYC 1 cut(s) 875
AfaI GTAC 5 cut(s) 93, 118, 452, 847, 984
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 9 cut(s) 304, 364, 560, 577, 599, 869, 949, 1063, 1189
AjnI CCWGG 3 cut(s) 1144, 1206, 1429
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AloI GAACNNNNNNTCC 2 cut(s) 715, 747
Alw21I GWGCWC 2 cut(s) 1118, 1418
Alw26I GTCTC 3 cut(s) 618, 866, 1143
AlwI GGATC 2 cut(s) 929, 1268
AlwNI CAGNNNCTG 1 cut(s) 1318
AoxI GGCC 4 cut(s) 307, 656, 1084, 1209
ApeKI GCWGC 2 cut(s) 1067, 1325
ApoI RAATTY 2 cut(s) 622, 1377
ArsI GACNNNNNNTTYG 2 cut(s) 1126, 1158
AseI ATTAAT 1 cut(s) 978
Asp700I GAANNNNTTC 3 cut(s) 1184, 1236, 1267
AspLEI GCGC 2 cut(s) 1100, 1365
AspS9I GGNCC 2 cut(s) 307, 1369
AsuHPI GGTGA 5 cut(s) 25, 32, 110, 480, 510
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 1369
BaeI ACNNNNGTAYC 2 cut(s) 1442, 1475
BalI TGGCCA 1 cut(s) 1086
BanII GRGCYC 2 cut(s) 1118, 1418
Bbv12I GWGCWC 2 cut(s) 1118, 1418
BbvI GCAGC 2 cut(s) 1054, 1312
BccI CCATC 5 cut(s) 17, 124, 461, 784, 1233
BcgI CGANNNNNNTGC 4 cut(s) 739, 773, 1388, 1422
BciT130I CCWGG 3 cut(s) 1146, 1208, 1431
BclI TGATCA 1 cut(s) 900
BcoDI GTCTC 3 cut(s) 618, 866, 1143
BfaI CTAG 2 cut(s) 669, 720
BfmI CTRYAG 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 883
BisI GCNGC 2 cut(s) 1068, 1326
BlsI GCNGC 2 cut(s) 1069, 1327
Bme1390I CCNGG 3 cut(s) 1146, 1208, 1431
Bme18I GGWCC 1 cut(s) 1369
BmgT120I GGNCC 2 cut(s) 307, 1369
BmiI GGNNCC 3 cut(s) 153, 1026, 1157
BmrFI CCNGG 3 cut(s) 1146, 1208, 1431
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 278, 847, 1118
BmuI ACTGGG 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 1294, 1326
BpmI CTGGAG 2 cut(s) 717, 1215
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 875
BsaJI CCNNGG 3 cut(s) 56, 342, 1175
BsaWI WCCGGW 2 cut(s) 453, 1557
BsaXI ACNNNNNCTCC 4 cut(s) 715, 745, 1140, 1170
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 2 cut(s) 117, 1198
Bse3DI GCAATG 1 cut(s) 1460
BseBI CCWGG 3 cut(s) 1146, 1208, 1431
BseDI CCNNGG 3 cut(s) 56, 342, 1175
BseGI GGATG 3 cut(s) 508, 1133, 1225
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 1460
BseMII CTCAG 6 cut(s) 117, 147, 815, 1325, 1431, 1466
BseNI ACTGG 2 cut(s) 117, 1198
BseRI GAGGAG 3 cut(s) 679, 720, 1349
BseXI GCAGC 2 cut(s) 1054, 1312
BseYI CCCAGC 2 cut(s) 34, 1505
BsgI GTGCAG 1 cut(s) 257
BshFI GGCC 4 cut(s) 309, 658, 1086, 1211
BsiHKAI GWGCWC 2 cut(s) 1118, 1418
BsiSI CCGG 2 cut(s) 454, 1558
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 3 cut(s) 618, 866, 1143
BsmBI CGTCTC 1 cut(s) 866
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 4 cut(s) 309, 658, 1086, 1211
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 1118, 1418
Bsp1407I TGTACA 1 cut(s) 982
Bsp143I GATC 5 cut(s) 103, 859, 900, 934, 1273
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 1159, 1280
BspANI GGCC 4 cut(s) 309, 658, 1086, 1211
BspCNI CTCAG 6 cut(s) 118, 148, 814, 1324, 1430, 1467
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 153, 1026, 1157
BspPI GGATC 2 cut(s) 929, 1268
BspQI GCTCTTC 1 cut(s) 1514
BspT104I TTCGAA 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 1460
BsrGI TGTACA 1 cut(s) 982
BsrI ACTGG 2 cut(s) 117, 1198
BssECI CCNNGG 3 cut(s) 56, 342, 1175
BssMI GATC 5 cut(s) 103, 859, 900, 934, 1273
BssNAI GTATAC 1 cut(s) 1291
BssNI GRCGYC 1 cut(s) 875
BssT1I CCWWGG 2 cut(s) 56, 342
Bst1107I GTATAC 1 cut(s) 1291
Bst2UI CCWGG 3 cut(s) 1146, 1208, 1431
Bst4CI ACNGT 7 cut(s) 278, 300, 435, 680, 780, 1152, 1458
Bst6I CTCTTC 5 cut(s) 572, 645, 732, 1475, 1514
BstACI GRCGYC 1 cut(s) 875
BstAUI TGTACA 1 cut(s) 982
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 4 cut(s) 762, 1005, 1499, 1503
BstDEI CTNAG 6 cut(s) 126, 156, 801, 1311, 1417, 1475
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 3 cut(s) 508, 1133, 1225
BstHHI GCGC 2 cut(s) 1100, 1365
BstKTI GATC 5 cut(s) 106, 862, 903, 937, 1276
BstMAI GTCTC 3 cut(s) 618, 866, 1143
BstMBI GATC 5 cut(s) 103, 859, 900, 934, 1273
BstMWI GCNNNNNNNGC 4 cut(s) 166, 761, 883, 1013
BstNI CCWGG 3 cut(s) 1146, 1208, 1431
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 3 cut(s) 1144, 1206, 1429
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 1054, 1312
BstX2I RGATCY 1 cut(s) 934
BstXI CCANNNNNNTGG 2 cut(s) 1152, 1505
BstYI RGATCY 1 cut(s) 934
BstZ17I GTATAC 1 cut(s) 1291
BsuRI GGCC 4 cut(s) 309, 658, 1086, 1211
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 3 cut(s) 508, 1133, 1225
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 194, 408, 1157
Cac8I GCNNGC 4 cut(s) 762, 1005, 1499, 1503
CaiI CAGNNNCTG 1 cut(s) 1318
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 1100, 1365
Cfr13I GGNCC 2 cut(s) 307, 1369
CseI GACGC 1 cut(s) 883
Csp6I GTAC 5 cut(s) 92, 117, 451, 846, 983
CviQI GTAC 5 cut(s) 92, 117, 451, 846, 983
DdeI CTNAG 6 cut(s) 126, 156, 801, 1311, 1417, 1475
DpnI GATC 5 cut(s) 105, 861, 902, 936, 1275
DpnII GATC 5 cut(s) 103, 859, 900, 934, 1273
EaeI YGGCCR 1 cut(s) 1084
Eam1104I CTCTTC 5 cut(s) 572, 645, 732, 1475, 1514
EarI CTCTTC 5 cut(s) 572, 645, 732, 1475, 1514
Ecl136II GAGCTC 2 cut(s) 1116, 1416
Eco130I CCWWGG 2 cut(s) 56, 342
Eco147I AGGCCT 1 cut(s) 1211
Eco24I GRGCYC 2 cut(s) 1118, 1418
Eco47I GGWCC 1 cut(s) 1369
Eco53kI GAGCTC 2 cut(s) 1116, 1416
EcoICRI GAGCTC 2 cut(s) 1116, 1416
EcoRII CCWGG 3 cut(s) 1144, 1206, 1429
EcoT14I CCWWGG 2 cut(s) 56, 342
EcoT22I ATGCAT 2 cut(s) 1005, 1009
EcoT38I GRGCYC 2 cut(s) 1118, 1418
ErhI CCWWGG 2 cut(s) 56, 342
Esp3I CGTCTC 1 cut(s) 866
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 1 cut(s) 1290
Fnu4HI GCNGC 2 cut(s) 1068, 1326
FokI GGATG 3 cut(s) 515, 1140, 1212
FriOI GRGCYC 2 cut(s) 1118, 1418
Fsp4HI GCNGC 2 cut(s) 1068, 1326
FspBI CTAG 2 cut(s) 669, 720
FspI TGCGCA 1 cut(s) 1364
GlaI GCGC 2 cut(s) 1099, 1364
GluI GCNGC 2 cut(s) 1068, 1326
GsaI CCCAGC 2 cut(s) 38, 1509
GsuI CTGGAG 2 cut(s) 717, 1215
HaeIII GGCC 4 cut(s) 309, 658, 1086, 1211
HapII CCGG 2 cut(s) 454, 1558
HgaI GACGC 1 cut(s) 883
HhaI GCGC 2 cut(s) 1100, 1365
Hin1I GRCGYC 1 cut(s) 875
Hin6I GCGC 2 cut(s) 1098, 1363
HinP1I GCGC 2 cut(s) 1098, 1363
HindIII AAGCTT 2 cut(s) 214, 753
HinfI GANTC 6 cut(s) 52, 665, 740, 1400, 1469, 1537
HpaII CCGG 2 cut(s) 454, 1558
HphI GGTGA 5 cut(s) 25, 32, 110, 480, 510
Hpy166II GTNNAC 7 cut(s) 92, 119, 352, 676, 848, 985, 1291
Hpy188I TCNGA 9 cut(s) 127, 274, 804, 859, 892, 1176, 1273, 1420, 1476
Hpy188III TCNNGA 9 cut(s) 221, 263, 734, 869, 973, 1189, 1229, 1260, 1313
Hpy8I GTNNAC 7 cut(s) 92, 119, 352, 676, 848, 985, 1291
HpyAV CCTTC 3 cut(s) 185, 625, 1057
HpyCH4III ACNGT 7 cut(s) 278, 300, 435, 680, 780, 1152, 1458
HpyCH4IV ACGT 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 4 cut(s) 166, 761, 883, 1013
HpyF3I CTNAG 6 cut(s) 126, 156, 801, 1311, 1417, 1475
HpySE526I ACGT 1 cut(s) 205
Hsp92I GRCGYC 1 cut(s) 875
HspAI GCGC 2 cut(s) 1098, 1363
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 5 cut(s) 103, 859, 900, 934, 1273
LguI GCTCTTC 1 cut(s) 1514
LmnI GCTCC 2 cut(s) 1161, 1315
Lsp1109I GCAGC 2 cut(s) 1054, 1312
LweI GCATC 3 cut(s) 278, 847, 1118
MaeI CTAG 2 cut(s) 669, 720
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 5 cut(s) 294, 523, 715, 906, 1164
MalI GATC 5 cut(s) 105, 861, 902, 936, 1275
MboI GATC 5 cut(s) 103, 859, 900, 934, 1273
MfeI CAATTG 2 cut(s) 473, 1218
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 2 cut(s) 1118, 1418
MlsI TGGCCA 1 cut(s) 1086
MluNI TGGCCA 1 cut(s) 1086
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 1 cut(s) 622
Mox20I TGGCCA 1 cut(s) 1086
Mph1103I ATGCAT 2 cut(s) 1005, 1009
MroXI GAANNNNTTC 3 cut(s) 1184, 1236, 1267
MscI TGGCCA 1 cut(s) 1086
MseI TTAA 4 cut(s) 108, 390, 978, 1488
Msp20I TGGCCA 1 cut(s) 1086
MspI CCGG 2 cut(s) 454, 1558
MspR9I CCNGG 3 cut(s) 1146, 1208, 1431
MunI CAATTG 2 cut(s) 473, 1218
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 3 cut(s) 1146, 1208, 1431
MwoI GCNNNNNNNGC 4 cut(s) 166, 761, 883, 1013
NcoI CCATGG 1 cut(s) 342
NdeII GATC 5 cut(s) 103, 859, 900, 934, 1273
NlaIV GGNNCC 3 cut(s) 153, 1026, 1157
NmuCI GTSAC 2 cut(s) 294, 906
NsbI TGCGCA 1 cut(s) 1364
NsiI ATGCAT 2 cut(s) 1005, 1009
NspI RCATGY 1 cut(s) 1007
NspV TTCGAA 1 cut(s) 71
PaeI GCATGC 1 cut(s) 1007
PagI TCATGA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 1211
PciSI GCTCTTC 1 cut(s) 1514
PctI GAATGC 1 cut(s) 710
PdmI GAANNNNTTC 3 cut(s) 1184, 1236, 1267
PfeI GAWTC 5 cut(s) 52, 665, 1400, 1469, 1537
PfoI TCCNGGA 1 cut(s) 1144
PkrI GCNGC 2 cut(s) 1069, 1327
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
PshBI ATTAAT 1 cut(s) 978
Psp124BI GAGCTC 2 cut(s) 1118, 1418
Psp6I CCWGG 3 cut(s) 1144, 1206, 1429
PspFI CCCAGC 2 cut(s) 34, 1505
PspGI CCWGG 3 cut(s) 1144, 1206, 1429
PspN4I GGNNCC 3 cut(s) 153, 1026, 1157
PspPI GGNCC 2 cut(s) 307, 1369
PsrI GAACNNNNNNTAC 2 cut(s) 1224, 1256
PstNI CAGNNNCTG 1 cut(s) 1318
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 5 cut(s) 93, 118, 452, 847, 984
RsaNI GTAC 5 cut(s) 92, 117, 451, 846, 983
SacI GAGCTC 2 cut(s) 1118, 1418
SapI GCTCTTC 1 cut(s) 1514
SaqAI TTAA 4 cut(s) 108, 390, 978, 1488
SatI GCNGC 2 cut(s) 1068, 1326
Sau3AI GATC 5 cut(s) 103, 859, 900, 934, 1273
Sau96I GGNCC 2 cut(s) 307, 1369
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 3 cut(s) 1146, 1208, 1431
SduI GDGCHC 2 cut(s) 1118, 1418
SfaNI GCATC 3 cut(s) 278, 847, 1118
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 1 cut(s) 1369
SphI GCATGC 1 cut(s) 1007
SseBI AGGCCT 1 cut(s) 1211
SsiI CCGC 2 cut(s) 1159, 1280
SspMI CTAG 2 cut(s) 669, 720
SstI GAGCTC 2 cut(s) 1118, 1418
StuI AGGCCT 1 cut(s) 1211
StyD4I CCNGG 3 cut(s) 1144, 1206, 1429
StyI CCWWGG 2 cut(s) 56, 342
TaaI ACNGT 7 cut(s) 278, 300, 435, 680, 780, 1152, 1458
TaiI ACGT 1 cut(s) 208
TaqI TCGA 4 cut(s) 71, 1345, 1398, 1530
TatI WGTACW 2 cut(s) 91, 982
TfiI GAWTC 5 cut(s) 52, 665, 1400, 1469, 1537
Tru1I TTAA 4 cut(s) 108, 390, 978, 1488
Tru9I TTAA 4 cut(s) 108, 390, 978, 1488
TscAI CASTG 3 cut(s) 201, 408, 1157
TseFI GTSAC 2 cut(s) 294, 906
TseI GCWGC 2 cut(s) 1067, 1325
Tsp45I GTSAC 2 cut(s) 294, 906
TspDTI ATGAA 5 cut(s) 279, 519, 615, 801, 1215
TspGWI ACGGA 1 cut(s) 1531
TspRI CASTG 3 cut(s) 201, 408, 1157
VpaK11BI GGWCC 1 cut(s) 1369
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 2 cut(s) 622, 1377
XceI RCATGY 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 1290
XmnI GAANNNNTTC 3 cut(s) 1184, 1236, 1267
XspI CTAG 2 cut(s) 669, 720
Zsp2I ATGCAT 2 cut(s) 1005, 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.