pycom15g23570

Leucine-zipper of ternary complex factor MIP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003354
Physical Location & Seq
Forward (+)
17723913 .. 17727380
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGCCAGCTTTTCTTCTCCCGCTAAACCCCCCACGACCTGTTTTGCAGAGATTAAGGCGGTTTGGAGGGATGAGCGGTGGTGGAGGTAAAATGCTGGGATTAAGTGTGAAACAACACAAGCGTTCAAAAAGCTTTCCTGAGAAGAAAAGAGTGGAGGAAGATGATTTGGATAGTTCCGGTGAAGCATCAGACCTTGTAAAGCTGGATATGGGACAATTCAAGGGCCATGTTACGACCAAGAAGAAACAATCTCCTACCGTGGAAGTACACAACTCTTTAAAGCAAGAGATTCTACAGCTTGAGAAAAGATTACAAGATCAATTCGAGGTCCGTCATGCTTTAGAAAATGCATTGGGTTATAGGTCTTCCATCCATCATAATACAAATGCAAGTGTGATACCTAAGCCAGCTACAGAATTGATTAAGGAGATTGCTGTGTTAGAATTAGAAGTTGCCCATTTGGAACAATATCTTCTCTCGTTGTATAGGAGAGCATTTGATGGGAAATTTTCCTCTGTTTCCCCATCTAAGAAGGATGAACGACTAAAACCAACTCTAACAAGCCTAAGAAGCAGGTTCCTAGAAGTTTCTGAACCTGATATGCCATTGGAGAGGGAAAACTTGGCAGTTCAATCCAGTGGTCAGTCACTTGAAAATTCACAGAAGGAATTCAATGCAATTGGAGGAGAAGAGAAACTATTAGATTCCAGTGTTCACCGTTGCCACTCCTCACTTTCGCAACACTCTGCATTCTTAAGTAGAACTTCTCCAGAAGAGTCTTTGGCGAACACTTTGCGTTCCTGTCATTCTCAACCGTTGTCTATGATGGGGTATGCTCAGAATACTTCATCAAATTTAATTAGTCTGGCAGACCATCTTGGTACACGCATTGCTGATCATATTCCAGAGACACCTAACAGGCTTTCGGAGGACATGATCAAGTGCATGTCCACCATATATTGCAAGCTTTCGGAATCACCCTTGTCACATAATGGCCTTTCATCTCCCAATTCATCTTTGTCATCAACAAGTGCATTTTCACCGCGAGATCGATCTAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

355

Amino Acids

39.39

Weight (kDa)

8.55

Isoelectric Point (pI)

73.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 89 - 167 1.1e-26 Leucine-zipper of ternary complex factor MIP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccBSI CCGCTC 1 cut(s) 75
AccII CGCG 1 cut(s) 1045
AciI CCGC 4 cut(s) 20, 58, 75, 1043
AcsI RAATTY 4 cut(s) 506, 655, 668, 853
AfaI GTAC 2 cut(s) 267, 883
AflII CTTAAG 1 cut(s) 754
AgsI TTSAA 5 cut(s) 126, 220, 632, 653, 673
AluBI AGCT 6 cut(s) 8, 132, 202, 298, 410, 967
AluI AGCT 6 cut(s) 8, 132, 202, 298, 410, 967
Alw26I GTCTC 1 cut(s) 902
AoxI GGCC 2 cut(s) 223, 994
ApoI RAATTY 4 cut(s) 506, 655, 668, 853
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 2 cut(s) 223, 328
AsuHPI GGTGA 4 cut(s) 191, 707, 969, 1032
AvaII GGWCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 357
BccI CCATC 6 cut(s) 377, 381, 494, 532, 820, 882
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BclI TGATCA 2 cut(s) 895, 936
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 2 cut(s) 293, 411
BfrI CTTAAG 1 cut(s) 754
BfuAI ACCTGC 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 223, 328
BmiI GGNNCC 1 cut(s) 578
BmsI GCATC 1 cut(s) 194
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 1051
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 636, 708
Bse3DI GCAATG 1 cut(s) 888
BseCI ATCGAT 1 cut(s) 1051
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 3 cut(s) 75, 369, 541
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 2 cut(s) 129, 851
BseNI ACTGG 2 cut(s) 636, 708
BseRI GAGGAG 2 cut(s) 699, 718
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 1045
BshFI GGCC 2 cut(s) 225, 996
BshVI ATCGAT 1 cut(s) 1051
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 2 cut(s) 225, 996
Bsp143I GATC 5 cut(s) 316, 895, 936, 1048, 1052
BspACI CCGC 4 cut(s) 20, 58, 75, 1043
BspANI GGCC 2 cut(s) 225, 996
BspCNI CTCAG 2 cut(s) 130, 850
BspDI ATCGAT 1 cut(s) 1051
BspFNI CGCG 1 cut(s) 1045
BspLI GGNNCC 1 cut(s) 578
BspMI ACCTGC 1 cut(s) 564
BspTI CTTAAG 1 cut(s) 754
BsrBI CCGCTC 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 2 cut(s) 636, 708
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 5 cut(s) 316, 895, 936, 1048, 1052
Bst4CI ACNGT 3 cut(s) 259, 719, 816
Bst6I CTCTTC 2 cut(s) 684, 768
BstAFI CTTAAG 1 cut(s) 754
BstC8I GCNNGC 3 cut(s) 6, 408, 965
BstDEI CTNAG 5 cut(s) 138, 402, 528, 566, 837
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 3 cut(s) 75, 369, 541
BstFNI CGCG 1 cut(s) 1045
BstKTI GATC 5 cut(s) 319, 898, 939, 1051, 1055
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 5 cut(s) 316, 895, 936, 1048, 1052
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 949
BstSFI CTRYAG 2 cut(s) 293, 411
BstUI CGCG 1 cut(s) 1045
BstV2I GAAGAC 1 cut(s) 357
Bsu15I ATCGAT 1 cut(s) 1051
BsuRI GGCC 2 cut(s) 225, 996
BsuTUI ATCGAT 1 cut(s) 1051
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 3 cut(s) 75, 369, 541
BtsIMutI CAGTG 2 cut(s) 643, 715
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 6, 408, 965
Cfr13I GGNCC 2 cut(s) 223, 328
ClaI ATCGAT 1 cut(s) 1051
Csp6I GTAC 2 cut(s) 266, 882
CviAII CATG 4 cut(s) 227, 335, 934, 946
CviQI GTAC 2 cut(s) 266, 882
DdeI CTNAG 5 cut(s) 138, 402, 528, 566, 837
DpnI GATC 5 cut(s) 318, 897, 938, 1050, 1054
DpnII GATC 5 cut(s) 316, 895, 936, 1048, 1052
DraI TTTAAA 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 684, 768
EarI CTCTTC 2 cut(s) 684, 768
Eco47I GGWCC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 668
EcoT22I ATGCAT 1 cut(s) 352
FaeI CATG 4 cut(s) 230, 338, 937, 949
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FaqI GGGAC 1 cut(s) 225
FatI CATG 4 cut(s) 226, 334, 933, 945
FauI CCCGC 1 cut(s) 27
FbaI TGATCA 2 cut(s) 895, 936
FokI GGATG 3 cut(s) 82, 356, 548
FspBI CTAG 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 2 cut(s) 225, 996
HapII CCGG 1 cut(s) 177
Hin1II CATG 4 cut(s) 230, 338, 937, 949
HindIII AAGCTT 2 cut(s) 130, 965
HinfI GANTC 4 cut(s) 289, 704, 776, 974
HpaII CCGG 1 cut(s) 177
HphI GGTGA 4 cut(s) 191, 707, 969, 1032
Hpy166II GTNNAC 4 cut(s) 268, 715, 884, 951
Hpy188I TCNGA 5 cut(s) 190, 592, 840, 928, 973
Hpy188III TCNNGA 3 cut(s) 137, 770, 905
Hpy8I GTNNAC 4 cut(s) 268, 715, 884, 951
HpyAV CCTTC 2 cut(s) 526, 658
HpyCH4III ACNGT 3 cut(s) 259, 719, 816
HpyCH4V TGCA 8 cut(s) 46, 350, 389, 677, 749, 945, 963, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 5 cut(s) 138, 402, 528, 566, 837
Hsp92II CATG 4 cut(s) 230, 338, 937, 949
Ksp22I TGATCA 2 cut(s) 895, 936
Kzo9I GATC 5 cut(s) 316, 895, 936, 1048, 1052
LweI GCATC 1 cut(s) 194
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 3 cut(s) 229, 645, 984
MalI GATC 5 cut(s) 318, 897, 938, 1050, 1054
MbiI CCGCTC 1 cut(s) 75
MboI GATC 5 cut(s) 316, 895, 936, 1048, 1052
MboII GAAGA 8 cut(s) 5, 154, 170, 253, 357, 464, 701, 785
MfeI CAATTG 1 cut(s) 678
MlyI GAGTC 1 cut(s) 785
MnlI CCTC 9 cut(s) 59, 77, 148, 319, 523, 606, 677, 739, 922
Mph1103I ATGCAT 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 6 cut(s) 53, 101, 278, 423, 755, 857
MspCI CTTAAG 1 cut(s) 754
MspI CCGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 749
MvnI CGCG 1 cut(s) 1045
MwoI GCNNNNNNNGC 1 cut(s) 570
NdeII GATC 5 cut(s) 316, 895, 936, 1048, 1052
NlaIII CATG 4 cut(s) 230, 338, 937, 949
NlaIV GGNNCC 1 cut(s) 578
NmuCI GTSAC 2 cut(s) 645, 984
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 949
PctI GAATGC 1 cut(s) 749
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 3 cut(s) 289, 704, 974
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 578
PspPI GGNCC 2 cut(s) 223, 328
RsaI GTAC 2 cut(s) 267, 883
RsaNI GTAC 2 cut(s) 266, 882
SaqAI TTAA 6 cut(s) 53, 101, 278, 423, 755, 857
Sau3AI GATC 5 cut(s) 316, 895, 936, 1048, 1052
Sau96I GGNCC 2 cut(s) 223, 328
SchI GAGTC 1 cut(s) 785
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 2 cut(s) 293, 411
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 2 cut(s) 299, 754
SmoI CTYRAG 2 cut(s) 299, 754
SsiI CCGC 4 cut(s) 20, 58, 75, 1043
SspMI CTAG 1 cut(s) 581
TaaI ACNGT 3 cut(s) 259, 719, 816
TaqI TCGA 2 cut(s) 324, 1051
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 3 cut(s) 289, 704, 974
Tru1I TTAA 6 cut(s) 53, 101, 278, 423, 755, 857
Tru9I TTAA 6 cut(s) 53, 101, 278, 423, 755, 857
TscAI CASTG 2 cut(s) 643, 715
TseFI GTSAC 2 cut(s) 645, 984
Tsp45I GTSAC 2 cut(s) 645, 984
TspDTI ATGAA 4 cut(s) 552, 837, 990, 1002
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 643, 715
Vha464I CTTAAG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 4 cut(s) 506, 655, 668, 853
XceI RCATGY 1 cut(s) 949
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.