pycom15g23940

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015517
Physical Location & Seq
Forward (+)
18068523 .. 18070302
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1170 bp
ATGATCAGAAGGGTAGAAAAGACTAGGAATTTGGGAAAAGACCATTTGCTTCCTTCCCAAATTAACCACTTGCAACTGAATTCCGAATCCACCAAAATTAAATACCACTTTATATCGATCCAAGAACTGTTTGGAGGTGCAGGACTTAGTAACATAGAAGGAGGAGAGAGGAAATCTTTCACCTTTCATGGTGGTACTACTTGTTCTCCTTCTCTGTCTCCTTCACCATCCCCTTCTTCCTCAACAACTACCACCGCCACCGCCACCACAACAATCACGGCAGGTTTATCAAATACTGAGAACTTGAGATGCCCAAGATGCGATTCTTCCAACACCAAGTTCTGCTACTACAACAATTACAACCTCACTCAACCCCGCCACTTCTGCAAGACCTGTCGCCGCTACTGGACAAAAGGAGGAGCCCTCCGCAACGTTCCAATTGGCGGCGGCTATAGAAAAAACAGGAGTGTCACCGGGTCAACGGCTTCCATAGGCAAGACCGCCGCAGGGAAGTTGAAAACGGTGGTGTCAGAGATTGGCCGTTCAGGATTTGGTGGGGGGTTCGATGAGGAGGTCCAAGCAAGCCCAATACTATGGGGCTCGCCCCAGAATTCTCATTTACTAGCCCTGTTAAAAGCCAGTCATCATCAAAACCCTAACCCTAATCAACTTTGTAATTCTGTAAATGTGAAGGAAGAGGGAGGTATGAATATGATTGGGTCCCACATGATGACTACTGAGGCAATTGCAATGAATACTGCTCGAACCCTGGGGTTGGATCCAGTGTGGTGGCGTCTTCATCCTCCTCATCATTGTCTTCATATTCCACGTCATCGATTTTGGATTCGTCTCCGGCGGTTGGCGGTGGCGAAATGGGTTACTGGAACCCGGCGTTTACCGCGTGGTCATTTGATCTTCCGACAACCAATGGTGCATATCATTAAGTCTTTAGCCTCAGTTAGGTTCTACTTTTTCTTTAATTTGGTTGATTTTTTGGTTATGTTTGTGTGGGTTGTGGTACTTATTATGGCTTTAGCCTCAGTAGCTAATAGCCACTCCTCTTTCTTCTTCTCTGTCTGTATGTGTGTTTTAAGGTGTAAAGGACATATGAGGGTGTACCAACTAAGGACCAGGAAATTAAATGTTCTGTTACTTGTTAGTGGTTCTTGA

Protein Analysis

390

Amino Acids

43.46

Weight (kDa)

10.34

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 101 - 156 2.4e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015517)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14970
malus_domestica MD02G1163500.v1.1 MD15G1276300.v1.1
prunus_persica Prupe.7G140700_v2.0.a1
pyrus_communis pycom02g12950 pycom15g23940
rosa_chinensis RchiOBHm_Chr2g0104031
rosa_laevigata RLG00000017279
rosa_multiflora Rmu_sc0001720.1_g000009
rosa_roxburghii Rroxscaffold_2G00139190
rosa_rugosa Rorug02G0118700
rosa_samantha Rh2AG168000 Rh2BG175000 Rh2CG173800 Rh2DG173500
rosa_wichuraiana Rw2G013140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 272
AccII CGCG 1 cut(s) 901
AclI AACGTT 1 cut(s) 432
AclWI GGATC 3 cut(s) 112, 773, 786
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 3 cut(s) 28, 79, 610
AcyI GRCGYC 1 cut(s) 793
AfaI GTAC 3 cut(s) 196, 1020, 1118
AfiI CCNNNNNNNGG 5 cut(s) 443, 507, 775, 859, 960
AgsI TTSAA 1 cut(s) 517
AjiI CACGTC 1 cut(s) 830
AjnI CCWGG 2 cut(s) 768, 1130
AjuI GAANNNNNNNTTGG 4 cut(s) 307, 323, 339, 355
AluBI AGCT 1 cut(s) 1046
AluI AGCT 1 cut(s) 1046
Alw26I GTCTC 2 cut(s) 222, 854
AlwI GGATC 3 cut(s) 112, 773, 786
AoxI GGCC 1 cut(s) 538
ApoI RAATTY 3 cut(s) 28, 79, 610
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 3 cut(s) 574, 720, 1128
AsuC2I CCSGG 2 cut(s) 475, 889
AsuHPI GGTGA 3 cut(s) 172, 216, 463
AvaII GGWCC 3 cut(s) 574, 720, 1128
BamHI GGATCC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 424, 602
BbsI GAAGAC 2 cut(s) 788, 809
BccI CCATC 1 cut(s) 235
BceAI ACGGC 3 cut(s) 294, 498, 525
BciT130I CCWGG 2 cut(s) 770, 1132
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 475, 889
BcoDI GTCTC 2 cut(s) 222, 854
BfaI CTAG 2 cut(s) 24, 623
BfmI CTRYAG 1 cut(s) 451
BfuAI ACCTGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 400, 445, 448, 504
BlsI GCNGC 4 cut(s) 401, 446, 449, 505
Bme1390I CCNGG 4 cut(s) 475, 770, 889, 1132
Bme18I GGWCC 3 cut(s) 574, 720, 1128
BmgBI CACGTC 1 cut(s) 830
BmgT120I GGNCC 3 cut(s) 574, 720, 1128
BmiI GGNNCC 5 cut(s) 421, 721, 722, 780, 886
BmrFI CCNGG 4 cut(s) 475, 770, 889, 1132
BmsI GCATC 2 cut(s) 299, 308
BpiI GAAGAC 2 cut(s) 788, 809
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpuEI CTTGAG 1 cut(s) 325
BpuMI CCSGG 2 cut(s) 475, 889
Bsa29I ATCGAT 2 cut(s) 116, 835
BsaHI GRCGYC 1 cut(s) 793
BsaJI CCNNGG 2 cut(s) 768, 769
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 5 cut(s) 443, 507, 775, 859, 960
Bse1I ACTGG 4 cut(s) 410, 639, 782, 886
Bse3DI GCAATG 1 cut(s) 756
BseBI CCWGG 2 cut(s) 770, 1132
BseCI ATCGAT 2 cut(s) 116, 835
BseDI CCNNGG 2 cut(s) 768, 769
BseGI GGATG 2 cut(s) 227, 799
BseLI CCNNNNNNNGG 5 cut(s) 443, 507, 775, 859, 960
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 4 cut(s) 288, 729, 969, 1053
BseNI ACTGG 4 cut(s) 410, 639, 782, 886
BseRI GAGGAG 5 cut(s) 177, 432, 584, 795, 1048
BsgI GTGCAG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 901
BshFI GGCC 1 cut(s) 540
BshVI ATCGAT 2 cut(s) 116, 835
BsiSI CCGG 3 cut(s) 474, 853, 889
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 5 cut(s) 443, 507, 775, 859, 960
BsmAI GTCTC 2 cut(s) 222, 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 1 cut(s) 540
Bsp1286I GDGCHC 2 cut(s) 424, 602
Bsp143I GATC 4 cut(s) 3, 117, 778, 912
BspANI GGCC 1 cut(s) 540
BspCNI CTCAG 4 cut(s) 289, 730, 968, 1052
BspDI ATCGAT 2 cut(s) 116, 835
BspFNI CGCG 1 cut(s) 901
BspLI GGNNCC 5 cut(s) 421, 721, 722, 780, 886
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 3 cut(s) 112, 773, 786
BsrDI GCAATG 1 cut(s) 756
BsrI ACTGG 4 cut(s) 410, 639, 782, 886
BssECI CCNNGG 2 cut(s) 768, 769
BssMI GATC 4 cut(s) 3, 117, 778, 912
BssNI GRCGYC 1 cut(s) 793
Bst2UI CCWGG 2 cut(s) 770, 1132
Bst4CI ACNGT 2 cut(s) 129, 523
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 1 cut(s) 793
BstC8I GCNNGC 2 cut(s) 583, 602
BstDEI CTNAG 6 cut(s) 146, 297, 738, 955, 1039, 1124
BstENI CCTNNNNNAGG 1 cut(s) 958
BstF5I GGATG 2 cut(s) 227, 799
BstFNI CGCG 1 cut(s) 901
BstKTI GATC 4 cut(s) 6, 120, 781, 915
BstMAI GTCTC 2 cut(s) 222, 854
BstMBI GATC 4 cut(s) 3, 117, 778, 912
BstMWI GCNNNNNNNGC 4 cut(s) 318, 384, 898, 1043
BstNI CCWGG 2 cut(s) 770, 1132
BstSCI CCNGG 4 cut(s) 473, 768, 887, 1130
BstSFI CTRYAG 1 cut(s) 451
BstUI CGCG 1 cut(s) 901
BstV2I GAAGAC 2 cut(s) 788, 809
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 2 cut(s) 594, 789
BstYI RGATCY 1 cut(s) 778
Bsu15I ATCGAT 2 cut(s) 116, 835
BsuRI GGCC 1 cut(s) 540
BsuTUI ATCGAT 2 cut(s) 116, 835
BtrI CACGTC 1 cut(s) 830
BtsCI GGATG 2 cut(s) 227, 799
BtsIMutI CAGTG 1 cut(s) 789
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 583, 602
Cfr13I GGNCC 3 cut(s) 574, 720, 1128
ClaI ATCGAT 2 cut(s) 116, 835
CseI GACGC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 195, 1019, 1117
CviAII CATG 2 cut(s) 188, 727
CviQI GTAC 3 cut(s) 195, 1019, 1117
DdeI CTNAG 6 cut(s) 146, 297, 738, 955, 1039, 1124
DpnI GATC 4 cut(s) 5, 119, 780, 914
DpnII GATC 4 cut(s) 3, 117, 778, 912
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 424, 602
Eco47I GGWCC 3 cut(s) 574, 720, 1128
EcoNI CCTNNNNNAGG 1 cut(s) 958
EcoO109I RGGNCCY 1 cut(s) 720
EcoRI GAATTC 2 cut(s) 79, 610
EcoRII CCWGG 2 cut(s) 768, 1130
EcoT38I GRGCYC 2 cut(s) 424, 602
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 2 cut(s) 191, 730
FaqI GGGAC 1 cut(s) 706
FatI CATG 2 cut(s) 187, 726
FauI CCCGC 1 cut(s) 383
FauNDI CATATG 1 cut(s) 1107
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 400, 445, 448, 504
FokI GGATG 2 cut(s) 214, 786
FriOI GRGCYC 2 cut(s) 424, 602
Fsp4HI GCNGC 4 cut(s) 400, 445, 448, 504
FspBI CTAG 2 cut(s) 24, 623
GluI GCNGC 4 cut(s) 400, 445, 448, 504
HaeIII GGCC 1 cut(s) 540
HapII CCGG 3 cut(s) 474, 853, 889
HgaI GACGC 1 cut(s) 782
Hin1I GRCGYC 1 cut(s) 793
Hin1II CATG 2 cut(s) 191, 730
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HinfI GANTC 3 cut(s) 86, 323, 844
HpaII CCGG 3 cut(s) 474, 853, 889
HphI GGTGA 3 cut(s) 172, 216, 463
Hpy166II GTNNAC 3 cut(s) 480, 896, 1117
Hpy188I TCNGA 4 cut(s) 8, 85, 532, 920
Hpy188III TCNNGA 2 cut(s) 546, 1167
Hpy8I GTNNAC 3 cut(s) 480, 896, 1117
HpyAV CCTTC 7 cut(s) 3, 63, 152, 219, 231, 243, 685
HpyCH4III ACNGT 2 cut(s) 129, 523
HpyCH4IV ACGT 2 cut(s) 432, 829
HpyCH4V TGCA 5 cut(s) 73, 140, 387, 749, 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 318, 384, 898, 1043
HpyF3I CTNAG 6 cut(s) 146, 297, 738, 955, 1039, 1124
HpySE526I ACGT 2 cut(s) 432, 829
Hsp92I GRCGYC 1 cut(s) 793
Hsp92II CATG 2 cut(s) 191, 730
KflI GGGWCCC 1 cut(s) 720
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 117, 778, 912
LmnI GCTCC 1 cut(s) 419
LweI GCATC 2 cut(s) 299, 308
MaeI CTAG 2 cut(s) 24, 623
MaeII ACGT 2 cut(s) 432, 829
MaeIII GTNAC 4 cut(s) 149, 469, 877, 1149
MalI GATC 4 cut(s) 5, 119, 780, 914
MboI GATC 4 cut(s) 3, 117, 778, 912
MboII GAAGA 8 cut(s) 228, 318, 707, 788, 809, 907, 1057, 1060
MfeI CAATTG 2 cut(s) 438, 744
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 2 cut(s) 424, 602
MmeI TCCRAC 3 cut(s) 354, 756, 943
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 7 cut(s) 63, 99, 632, 942, 978, 1091, 1139
MspI CCGG 3 cut(s) 474, 853, 889
MspR9I CCNGG 4 cut(s) 475, 770, 889, 1132
MunI CAATTG 2 cut(s) 438, 744
MvaI CCWGG 2 cut(s) 770, 1132
MvnI CGCG 1 cut(s) 901
MwoI GCNNNNNNNGC 4 cut(s) 318, 384, 898, 1043
NciI CCSGG 2 cut(s) 475, 889
NdeI CATATG 1 cut(s) 1107
NdeII GATC 4 cut(s) 3, 117, 778, 912
NlaIII CATG 2 cut(s) 191, 730
NlaIV GGNNCC 5 cut(s) 421, 721, 722, 780, 886
NmuCI GTSAC 1 cut(s) 469
PasI CCCWGGG 1 cut(s) 769
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 86, 323, 844
PkrI GCNGC 4 cut(s) 401, 446, 449, 505
PpuMI RGGWCCY 1 cut(s) 720
Psp1406I AACGTT 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 720
Psp6I CCWGG 2 cut(s) 768, 1130
PspGI CCWGG 2 cut(s) 768, 1130
PspN4I GGNNCC 5 cut(s) 421, 721, 722, 780, 886
PspPI GGNCC 3 cut(s) 574, 720, 1128
PspPPI RGGWCCY 1 cut(s) 720
PsrI GAACNNNNNNTAC 2 cut(s) 187, 219
PsuI RGATCY 1 cut(s) 778
RsaI GTAC 3 cut(s) 196, 1020, 1118
RsaNI GTAC 3 cut(s) 195, 1019, 1117
SaqAI TTAA 7 cut(s) 63, 99, 632, 942, 978, 1091, 1139
SatI GCNGC 4 cut(s) 400, 445, 448, 504
Sau3AI GATC 4 cut(s) 3, 117, 778, 912
Sau96I GGNCC 3 cut(s) 574, 720, 1128
ScrFI CCNGG 4 cut(s) 475, 770, 889, 1132
SduI GDGCHC 2 cut(s) 424, 602
SfaNI GCATC 2 cut(s) 299, 308
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 3 cut(s) 574, 720, 1128
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SspMI CTAG 2 cut(s) 24, 623
StyD4I CCNGG 4 cut(s) 473, 768, 887, 1130
TaaI ACNGT 2 cut(s) 129, 523
TaiI ACGT 2 cut(s) 435, 832
TaqI TCGA 4 cut(s) 116, 564, 763, 835
TauI GCSGC 4 cut(s) 402, 447, 450, 506
TfiI GAWTC 3 cut(s) 86, 323, 844
Tru1I TTAA 7 cut(s) 63, 99, 632, 942, 978, 1091, 1139
Tru9I TTAA 7 cut(s) 63, 99, 632, 942, 978, 1091, 1139
TscAI CASTG 1 cut(s) 789
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 5 cut(s) 176, 722, 767, 788, 809
TspRI CASTG 1 cut(s) 789
VpaK11BI GGWCC 3 cut(s) 574, 720, 1128
XagI CCTNNNNNAGG 1 cut(s) 958
XapI RAATTY 3 cut(s) 28, 79, 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 24, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.