Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005482

Physical Location & Seq

Genomic Coordinates Forward (+)

18392445 .. 18395040

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGACCCCAGAAGCCAGAAGCAGAGAGTTAGTAGGAAGCTTCACGATGCAGTTTCATTTTCAAAGCTATCATCCTTATGCAAATTGATTGTTCCAGTTGGGTTACCCTCATTGAGTACAAGTAAAGCTTCAAGATTTCTCAGCATCAATGATGAAAAGCCTTATCACTGCAGTGCAGCTTATGCTGCTCCCCTACATTCTATTAGTCTTCCGTTCCGAATGGAACCACTCGGGCCCACTGCAGACTCATCTTATGCTTCTGGTGCTGTGACTATTAATGAGTTTGTGCAAATCCTATCAGGGCAAGCTAGGCAGAATATGGTTGCCATTCTGGATGCTGCAATGCCATCCCCTTCTTTAACTGGGAATTGGGTTGGTCAAAATTTAACAGGGAATTTGCAGCCATTGACACCAGAGCTAGCAGAAGATGTCGAGGATTTACAGTCAGTAGAATCCATGATAGTCCATGGGGCCCTAGGATCAGGAGGTCATCGAGCATCAATTTCTGAAGTTAAGGACACAGTCCATTCTGCCTATGAGCATGCAATAACAAGGCCTATGTTCTGCCATCTGTCAGTGGCTCAATGTCCTCTTCCAATACCTTTGCCTTTTCCTTCAATCTTTGGCAACCTTGTCGGCCAACATGGTGAACTTTTGAGCACGCCAATTGTTGGTTCCCCATCAAGGGGATCACTTGATGTCCATTTCATCCCCATGGCAGCTAGACTACGGTCTAGCAGTGCTGTCTTGCCATTTTTACAGAATAGATTGAGCGGCCTCCGTAGCAGTGGGATTGCTAGAGGAGCACCTGGGGCGGAGCTAGTTAGAAGTTGGGGATTTGCAAAGGATGAATTGGAAGACATGGGTGAGATGCTGTCGAAAATGATTGCAACACTAGATCCACGTTCTCAAATCTCCTCTGATTCAGATGTGGAGATACGTGGAAGTGGGGAAAGAATGAGTTTAAGCGCCGTACAAGCTGTAATTTGTGGTGAAAGTCGAAGATATATATTCAAAAACTCGGAAACAAGGCAAACCGGTGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Misat_Tub_SegII Tubulin_3

Protein Analysis

350

Amino Acids

37.42

Weight (kDa)

6.56

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37190 AT4G37190
fragaria_vesca	FvH4_1g15480 FvH4_1g15480 FvH4_1g15480 FvH4_1g15480 FvH4_1g15480 FvH4_1g15480 FvH4_5g33502
malus_domestica	MD02G1166800.v1.1 MD15G1279300.v1.1
prunus_persica	Prupe.7G138000_v2.0.a1 Prupe.7G138000_v2.0.a1 Prupe.7G138000_v2.0.a1
pyrus_communis	pycom15g24210 pycom15g24220
rosa_chinensis	RchiOBHm_Chr2g0104711
rosa_laevigata	RLG00000017353
rosa_multiflora	Rmu_co8514121.1_g000001 Rmu_sc0002316.1_g000019
rosa_roxburghii	Rroxscaffold_2G00138810
rosa_rugosa	Rorug02G0121900
rosa_samantha	Rh2AG172200 Rh2BG179800 Rh2CG177300 Rh2DG178500
rosa_wichuraiana	Rw0G008630 Rw2G013480 Rw2G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	671
AccBSI	CCGCTC	1 cut(s)	774
AciI	CCGC	2 cut(s)	774, 815
AclWI	GGATC	3 cut(s)	487, 697, 893
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	2 cut(s)	382, 394
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	118, 975
AfiI	CCNNNNNNNGG	4 cut(s)	671, 684, 685, 686
AgeI	ACCGGT	1 cut(s)	1037
AgsI	TTSAA	4 cut(s)	63, 132, 618, 1015
AjnI	CCWGG	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AleI	CACNNNNGTG	1 cut(s)	171
AluBI	AGCT	9 cut(s)	40, 67, 128, 179, 308, 418, 722, 820, 980
AluI	AGCT	9 cut(s)	40, 67, 128, 179, 308, 418, 722, 820, 980
Alw21I	GWGCWC	2 cut(s)	662, 808
AlwI	GGATC	3 cut(s)	487, 697, 893
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	5 cut(s)	233, 471, 554, 637, 775
ApaI	GGGCCC	2 cut(s)	237, 475
ApeKI	GCWGC	5 cut(s)	176, 185, 338, 400, 719
ApoI	RAATTY	2 cut(s)	382, 394
AseI	ATTAAT	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	1037
AspA2I	CCTAGG	1 cut(s)	475
AspLEI	GCGC	1 cut(s)	971
AspS9I	GGNCC	5 cut(s)	4, 233, 234, 471, 472
AsuHPI	GGTGA	3 cut(s)	659, 878, 1004
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	475
BaeGI	GKGCMC	2 cut(s)	237, 475
BanII	GRGCYC	2 cut(s)	237, 475
BbsI	GAAGAC	2 cut(s)	200, 864
Bbv12I	GWGCWC	2 cut(s)	662, 808
BbvI	GCAGC	5 cut(s)	172, 188, 325, 412, 731
BccI	CCATC	3 cut(s)	355, 576, 688
BceAI	ACGGC	1 cut(s)	956
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	1 cut(s)	810
BfaI	CTAG	8 cut(s)	309, 419, 476, 723, 735, 798, 821, 896
BfmI	CTRYAG	2 cut(s)	169, 240
BfoI	RGCGCY	1 cut(s)	972
BisI	GCNGC	6 cut(s)	177, 186, 339, 401, 720, 775
BlnI	CCTAGG	1 cut(s)	475
BlsI	GCNGC	6 cut(s)	178, 187, 340, 402, 721, 776
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	5 cut(s)	4, 233, 234, 471, 472
BmiI	GGNNCC	6 cut(s)	6, 225, 235, 472, 473, 676
BmrFI	CCNGG	1 cut(s)	810
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	5 cut(s)	37, 153, 325, 506, 861
BmtI	GCTAGC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	372
BoxI	GACNNNNGTC	1 cut(s)	730
BpiI	GAAGAC	2 cut(s)	200, 864
BsaAI	YACGTR	1 cut(s)	941
BsaJI	CCNNGG	4 cut(s)	466, 475, 714, 809
BsaWI	WCCGGW	1 cut(s)	1037
Bsc4I	CCNNNNNNNGG	4 cut(s)	671, 684, 685, 686
Bse118I	RCCGGY	1 cut(s)	1037
Bse1I	ACTGG	2 cut(s)	95, 367
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	810
BseDI	CCNNGG	4 cut(s)	466, 475, 714, 809
BseGI	GGATG	5 cut(s)	71, 340, 347, 708, 853
BseLI	CCNNNNNNNGG	4 cut(s)	671, 684, 685, 686
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	154
BseNI	ACTGG	2 cut(s)	95, 367
BseRI	GAGGAG	2 cut(s)	816, 907
BseSI	GKGCMC	2 cut(s)	237, 475
BseXI	GCAGC	5 cut(s)	172, 188, 325, 412, 731
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	5 cut(s)	235, 473, 556, 639, 777
BshTI	ACCGGT	1 cut(s)	1037
BsiHKAI	GWGCWC	2 cut(s)	662, 808
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	1038
BslI	CCNNNNNNNGG	4 cut(s)	671, 684, 685, 686
BsnI	GGCC	5 cut(s)	235, 473, 556, 639, 777
BsoBI	CYCGRG	1 cut(s)	230
Bsp120I	GGGCCC	2 cut(s)	233, 471
Bsp1286I	GDGCHC	4 cut(s)	237, 475, 662, 808
Bsp143I	GATC	3 cut(s)	479, 689, 898
Bsp19I	CCATGG	2 cut(s)	466, 714
BspACI	CCGC	2 cut(s)	774, 815
BspANI	GGCC	5 cut(s)	235, 473, 556, 639, 777
BspCNI	CTCAG	1 cut(s)	153
BspLI	GGNNCC	6 cut(s)	6, 225, 235, 472, 473, 676
BspMAI	CTGCAG	2 cut(s)	173, 244
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	487, 697, 893
BsrBI	CCGCTC	1 cut(s)	774
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	1037
BsrI	ACTGG	2 cut(s)	95, 367
BssAI	RCCGGY	1 cut(s)	1037
BssECI	CCNNGG	4 cut(s)	466, 475, 714, 809
BssMI	GATC	3 cut(s)	479, 689, 898
BssT1I	CCWWGG	3 cut(s)	466, 475, 714
Bst2UI	CCWGG	1 cut(s)	810
Bst4CI	ACNGT	3 cut(s)	444, 523, 732
Bst6I	CTCTTC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	941
BstC8I	GCNNGC	4 cut(s)	306, 420, 543, 662
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	2 cut(s)	466, 714
BstEII	GGTNACC	1 cut(s)	102
BstF5I	GGATG	5 cut(s)	71, 340, 347, 708, 853
BstH2I	RGCGCY	1 cut(s)	972
BstHHI	GCGC	1 cut(s)	971
BstKTI	GATC	3 cut(s)	482, 692, 901
BstMBI	GATC	3 cut(s)	479, 689, 898
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 185, 263, 310, 783, 803, 812, 977
BstNI	CCWGG	1 cut(s)	810
BstNSI	RCATGY	1 cut(s)	545
BstPAI	GACNNNNGTC	1 cut(s)	730
BstPI	GGTNACC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	808
BstSFI	CTRYAG	2 cut(s)	169, 240
BstSLI	GKGCMC	2 cut(s)	237, 475
BstV1I	GCAGC	5 cut(s)	172, 188, 325, 412, 731
BstV2I	GAAGAC	2 cut(s)	200, 864
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	5 cut(s)	235, 473, 556, 639, 777
BtgI	CCRYGG	2 cut(s)	466, 714
BtsCI	GGATG	5 cut(s)	71, 340, 347, 708, 853
BtsI	GCAGTG	5 cut(s)	166, 178, 237, 745, 793
BtsIMutI	CAGTG	6 cut(s)	166, 178, 237, 582, 745, 793
Cac8I	GCNNGC	4 cut(s)	306, 420, 543, 662
CfoI	GCGC	1 cut(s)	971
Cfr10I	RCCGGY	1 cut(s)	1037
Cfr13I	GGNCC	5 cut(s)	4, 233, 234, 471, 472
Csp6I	GTAC	2 cut(s)	117, 974
CspAI	ACCGGT	1 cut(s)	1037
CviAII	CATG	6 cut(s)	457, 467, 542, 644, 715, 862
CviQI	GTAC	2 cut(s)	117, 974
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	3 cut(s)	481, 691, 900
DpnII	GATC	3 cut(s)	479, 689, 898
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	1 cut(s)	830
Eco130I	CCWWGG	3 cut(s)	466, 475, 714
Eco147I	AGGCCT	1 cut(s)	556
Eco24I	GRGCYC	2 cut(s)	237, 475
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	102
EcoO109I	RGGNCCY	2 cut(s)	471, 472
EcoO65I	GGTNACC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	808
EcoT14I	CCWWGG	3 cut(s)	466, 475, 714
EcoT38I	GRGCYC	2 cut(s)	237, 475
ErhI	CCWWGG	3 cut(s)	466, 475, 714
FaeI	CATG	6 cut(s)	460, 470, 545, 647, 718, 865
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	6 cut(s)	456, 466, 541, 643, 714, 861
Fnu4HI	GCNGC	6 cut(s)	177, 186, 339, 401, 720, 775
FokI	GGATG	5 cut(s)	58, 334, 347, 695, 860
FriOI	GRGCYC	2 cut(s)	237, 475
Fsp4HI	GCNGC	6 cut(s)	177, 186, 339, 401, 720, 775
FspBI	CTAG	8 cut(s)	309, 419, 476, 723, 735, 798, 821, 896
GlaI	GCGC	1 cut(s)	970
GluI	GCNGC	6 cut(s)	177, 186, 339, 401, 720, 775
HaeII	RGCGCY	1 cut(s)	972
HaeIII	GGCC	5 cut(s)	235, 473, 556, 639, 777
HapII	CCGG	1 cut(s)	1038
HhaI	GCGC	1 cut(s)	971
Hin1II	CATG	6 cut(s)	460, 470, 545, 647, 718, 865
Hin6I	GCGC	1 cut(s)	969
HinP1I	GCGC	1 cut(s)	969
HindIII	AAGCTT	2 cut(s)	38, 126
HinfI	GANTC	3 cut(s)	245, 452, 923
HpaII	CCGG	1 cut(s)	1038
HphI	GGTGA	3 cut(s)	659, 878, 1004
Hpy166II	GTNNAC	1 cut(s)	650
Hpy188I	TCNGA	5 cut(s)	218, 508, 922, 928, 1024
Hpy188III	TCNNGA	4 cut(s)	44, 132, 332, 483
Hpy8I	GTNNAC	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	363, 624, 1037
HpyCH4III	ACNGT	3 cut(s)	444, 523, 732
HpyCH4IV	ACGT	2 cut(s)	904, 940
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 185, 263, 310, 783, 803, 812, 977
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	2 cut(s)	904, 940
Hsp92II	CATG	6 cut(s)	460, 470, 545, 647, 718, 865
HspAI	GCGC	1 cut(s)	969
Kzo9I	GATC	3 cut(s)	479, 689, 898
LmnI	GCTCC	3 cut(s)	193, 803, 817
Lsp1109I	GCAGC	5 cut(s)	172, 188, 325, 412, 731
LweI	GCATC	5 cut(s)	37, 153, 325, 506, 861
MaeI	CTAG	8 cut(s)	309, 419, 476, 723, 735, 798, 821, 896
MaeII	ACGT	2 cut(s)	904, 940
MaeIII	GTNAC	2 cut(s)	102, 268
MalI	GATC	3 cut(s)	481, 691, 900
MbiI	CCGCTC	1 cut(s)	774
MboI	GATC	3 cut(s)	479, 689, 898
MboII	GAAGA	5 cut(s)	200, 437, 584, 869, 1014
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	4 cut(s)	237, 475, 662, 808
MluCI	AATT	8 cut(s)	83, 367, 382, 394, 501, 666, 851, 984
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	118, 427, 479, 600, 788, 794, 928
MseI	TTAA	5 cut(s)	276, 359, 386, 513, 965
MslI	CAYNNNNRTG	3 cut(s)	76, 171, 713
MspI	CCGG	1 cut(s)	1038
MspR9I	CCNGG	1 cut(s)	810
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	8 cut(s)	182, 185, 263, 310, 783, 803, 812, 977
NcoI	CCATGG	2 cut(s)	466, 714
NdeII	GATC	3 cut(s)	479, 689, 898
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	6 cut(s)	460, 470, 545, 647, 718, 865
NlaIV	GGNNCC	6 cut(s)	6, 225, 235, 472, 473, 676
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	545
OliI	CACNNNNGTG	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	545
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	452, 923
PflFI	GACNNNGTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	671
PinAI	ACCGGT	1 cut(s)	1037
PkrI	GCNGC	6 cut(s)	178, 187, 340, 402, 721, 776
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	941
PshAI	GACNNNNGTC	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	808
PspEI	GGTNACC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	808
PspN4I	GGNNCC	6 cut(s)	6, 225, 235, 472, 473, 676
PspOMI	GGGCCC	2 cut(s)	233, 471
PspPI	GGNCC	5 cut(s)	4, 233, 234, 471, 472
PstI	CTGCAG	2 cut(s)	173, 244
PsuI	RGATCY	1 cut(s)	898
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	2 cut(s)	118, 975
RsaNI	GTAC	2 cut(s)	117, 974
RseI	CAYNNNNRTG	3 cut(s)	76, 171, 713
SaqAI	TTAA	5 cut(s)	276, 359, 386, 513, 965
SatI	GCNGC	6 cut(s)	177, 186, 339, 401, 720, 775
Sau3AI	GATC	3 cut(s)	479, 689, 898
Sau96I	GGNCC	5 cut(s)	4, 233, 234, 471, 472
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	4 cut(s)	237, 475, 662, 808
SfaNI	GCATC	5 cut(s)	37, 153, 325, 506, 861
SfcI	CTRYAG	2 cut(s)	169, 240
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	3 cut(s)	76, 171, 713
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	8 cut(s)	83, 367, 382, 394, 501, 666, 851, 984
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	2 cut(s)	774, 815
SspMI	CTAG	8 cut(s)	309, 419, 476, 723, 735, 798, 821, 896
StuI	AGGCCT	1 cut(s)	556
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	3 cut(s)	466, 475, 714
TaaI	ACNGT	3 cut(s)	444, 523, 732
TaiI	ACGT	2 cut(s)	907, 943
TaqI	TCGA	4 cut(s)	432, 493, 878, 1000
TasI	AATT	8 cut(s)	83, 367, 382, 394, 501, 666, 851, 984
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	1 cut(s)	777
TfiI	GAWTC	2 cut(s)	452, 923
Tru1I	TTAA	5 cut(s)	276, 359, 386, 513, 965
Tru9I	TTAA	5 cut(s)	276, 359, 386, 513, 965
TscAI	CASTG	6 cut(s)	173, 178, 244, 582, 745, 793
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	5 cut(s)	176, 185, 338, 400, 719
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	4 cut(s)	45, 168, 697, 864
TspGWI	ACGGA	2 cut(s)	201, 770
TspRI	CASTG	6 cut(s)	173, 178, 244, 582, 745, 793
Tth111I	GACNNNGTC	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	2 cut(s)	382, 394
XceI	RCATGY	1 cut(s)	545
XmaJI	CCTAGG	1 cut(s)	475
XspI	CTAG	8 cut(s)	309, 419, 476, 723, 735, 798, 821, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.