pycom15g25770

UPF0553 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016736
Physical Location & Seq
Reverse (-)
20421536 .. 20423990
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGGACGATGTTAGGGCAAGCTCTGCTTGGGTCGCAAGCCATTCTTCTCATGTCCTCGTCGATTCTTCAGGGATTGAGAAAGTGGCGGAGACGATAGATACAATTCCGAAGGTGGAATGGGATTTCGAAGGGATACACTATTTCGACAATGGACCTCTCACCGTTCAGTACCTCTTTGTGTTGGACGCTTTGAATTTCTGCTTTTGGCCTGATAAGGACTTAAATTACGACAATTTGGCTGCCGGTCTGAAGGCAGCAATACAAAATGACAAATCTGTGTTTGATGCTGATCGTCTGCAGAAATACACCGGTCCTGAACTACGGGAGCTGTTGAAATGGCCAAGGTCACTACCCTTGGAGGACGAGAGAGTTCGTTTGTTACATGAGGTTGGGTTTGAACTGGAGAGAAGCTTTGATGGCAAGGCATCCAATCTTGTGGAGTCATGTGGAAAGTCAGCTGTTAAGCTTGTAGCTCTAGTTACTCGTCACTTTCCTGGTTTCCGAGACCACTCAGTATACAAGGGCCACCAAGTATTTTTGTATAAAAGAGCTCAGATATTTGCAGCAGACTTATGGGGTGCATTTGGAGGCCAAGGATATGGAGAATTTTATGACATTGGCTCAATCACTATTATGGCGGACTATATTGTTCCAGCCGTGCTTCAACAGCTGGGTGTGCTGAAGTATAGTGCAACCCTTGCCAGCGCTATCGAGGCTAATAGTCAAATAGTTGCAGGCAGTGAGGAGGAAGTTGAACTGCGAGCTTGCTCCATATATGCTGTCGAGAAAATGAAGGAGTTGATCAGTATGAAATCAGGGAAGCAGGTGCTGAGTATTGAGTTAGACCTTTGGCTTTGGTCTTTTGGCATTCAGTGTCCTGCTCTGCAACACCATCGAACCCTCTCTATATATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Q_salvage

Protein Analysis

306

Amino Acids

34.29

Weight (kDa)

5.22

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Q_salvage PF10343 46 - 305 5.2e-89 Queuosine salvage protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016736)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17400 FvH4_1g17400
malus_domestica MD00G1015500.v1.1 MD15G1294900.v1.1
prunus_persica Prupe.6G222900_v2.0.a1
pyrus_communis pycom15g25770
rosa_chinensis RchiOBHm_Chr2g0107591
rosa_laevigata RLG00000017593
rosa_multiflora Rmu_sc0000800.1_g000030
rosa_roxburghii Rroxscaffold_2G00136170
rosa_rugosa Rorug02G0145200
rosa_samantha Rh2BG207700 Rh2DG202600
rosa_wichuraiana Rw2G015460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc36I ACCTGC 1 cut(s) 814
AccI GTMKAC 1 cut(s) 516
AciI CCGC 2 cut(s) 86, 638
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 2 cut(s) 193, 605
AcuI CTGAAG 3 cut(s) 51, 269, 701
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 706
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 5 cut(s) 193, 334, 398, 665, 755
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 9 cut(s) 21, 328, 411, 458, 466, 473, 551, 670, 764
AluI AGCT 9 cut(s) 21, 328, 411, 458, 466, 473, 551, 670, 764
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 83, 498
AlwNI CAGNNNCTG 1 cut(s) 829
Aor51HI AGCGCT 1 cut(s) 706
AoxI GGCC 4 cut(s) 206, 338, 523, 589
ApeKI GCWGC 3 cut(s) 239, 254, 563
ApoI RAATTY 2 cut(s) 193, 605
AsiGI ACCGGT 1 cut(s) 308
AspLEI GCGC 1 cut(s) 707
AspS9I GGNCC 3 cut(s) 152, 311, 523
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 126
AvaII GGWCC 2 cut(s) 152, 311
BalI TGGCCA 1 cut(s) 340
BanII GRGCYC 1 cut(s) 553
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 3 cut(s) 226, 266, 575
BccI CCATC 2 cut(s) 410, 900
BceAI ACGGC 1 cut(s) 641
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 1 cut(s) 495
BciVI GTATCC 1 cut(s) 126
BclI TGATCA 1 cut(s) 801
BcoDI GTCTC 2 cut(s) 83, 498
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 1 cut(s) 126
BisI GCNGC 3 cut(s) 240, 255, 564
BlsI GCNGC 3 cut(s) 241, 256, 565
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 2 cut(s) 152, 311
BmgT120I GGNCC 3 cut(s) 152, 311, 523
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 2 cut(s) 274, 434
BpmI CTGGAG 1 cut(s) 422
Bpu14I TTCGAA 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 341, 354, 592
BsaWI WCCGGW 1 cut(s) 308
Bse118I RCCGGY 2 cut(s) 242, 308
Bse1I ACTGG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 3 cut(s) 341, 354, 592
BseGI GGATG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 288
BseMII CTCAG 3 cut(s) 525, 566, 821
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 3 cut(s) 226, 266, 575
BseYI CCCAGC 1 cut(s) 670
BshFI GGCC 4 cut(s) 208, 340, 525, 591
BshTI ACCGGT 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 2 cut(s) 243, 309
BsmAI GTCTC 2 cut(s) 83, 498
BsmBI CGTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 4 cut(s) 208, 340, 525, 591
Bso31I GGTCTC 1 cut(s) 498
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 553
Bsp143I GATC 2 cut(s) 289, 801
BspACI CCGC 2 cut(s) 86, 638
BspANI GGCC 4 cut(s) 208, 340, 525, 591
BspCNI CTCAG 3 cut(s) 524, 565, 822
BspMAI CTGCAG 1 cut(s) 300
BspMI ACCTGC 1 cut(s) 814
BspT104I TTCGAA 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 498
BsrFI RCCGGY 2 cut(s) 242, 308
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 2 cut(s) 242, 308
BssECI CCNNGG 3 cut(s) 341, 354, 592
BssMI GATC 2 cut(s) 289, 801
BssNAI GTATAC 1 cut(s) 517
BssT1I CCWWGG 3 cut(s) 341, 354, 592
Bst1107I GTATAC 1 cut(s) 517
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 163
BstAPI GCANNNNNTGC 2 cut(s) 23, 698
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 6 cut(s) 19, 37, 703, 736, 762, 766
BstDEI CTNAG 3 cut(s) 511, 552, 830
BstF5I GGATG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 1 cut(s) 707
BstKTI GATC 2 cut(s) 292, 804
BstMAI GTCTC 2 cut(s) 83, 498
BstMBI GATC 2 cut(s) 289, 801
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 417, 667, 676, 698, 713
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 226, 266, 575
BstXI CCANNNNNNTGG 2 cut(s) 436, 599
BstZ17I GTATAC 1 cut(s) 517
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 4 cut(s) 208, 340, 525, 591
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 745, 878
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 6 cut(s) 19, 37, 703, 736, 762, 766
CaiI CAGNNNCTG 1 cut(s) 829
CfoI GCGC 1 cut(s) 707
Cfr10I RCCGGY 2 cut(s) 242, 308
Cfr13I GGNCC 3 cut(s) 152, 311, 523
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 169
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 3 cut(s) 50, 383, 444
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 511, 552, 830
DpnI GATC 2 cut(s) 291, 803
DpnII GATC 2 cut(s) 289, 801
EaeI YGGCCR 1 cut(s) 338
EciI GGCGGA 2 cut(s) 101, 653
Ecl136II GAGCTC 1 cut(s) 551
Eco130I CCWWGG 3 cut(s) 341, 354, 592
Eco24I GRGCYC 1 cut(s) 553
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 2 cut(s) 152, 311
Eco47III AGCGCT 1 cut(s) 706
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 3 cut(s) 51, 269, 701
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 493
EcoT14I CCWWGG 3 cut(s) 341, 354, 592
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 3 cut(s) 341, 354, 592
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 3 cut(s) 53, 386, 447
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 28, 60
FatI CATG 3 cut(s) 49, 382, 443
FbaI TGATCA 1 cut(s) 801
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 240, 255, 564
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 3 cut(s) 240, 255, 564
FspBI CTAG 1 cut(s) 476
GlaI GCGC 1 cut(s) 706
GluI GCNGC 3 cut(s) 240, 255, 564
GsaI CCCAGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 4 cut(s) 208, 340, 525, 591
HapII CCGG 2 cut(s) 243, 309
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 707
Hin1II CATG 3 cut(s) 53, 386, 447
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HindIII AAGCTT 2 cut(s) 409, 464
HinfI GANTC 2 cut(s) 62, 440
HpaII CCGG 2 cut(s) 243, 309
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 4 cut(s) 108, 249, 503, 555
Hpy188III TCNNGA 2 cut(s) 314, 784
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 103, 122, 244, 787
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 6 cut(s) 298, 563, 581, 692, 734, 886
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 417, 667, 676, 698, 713
HpyF3I CTNAG 3 cut(s) 511, 552, 830
Hsp92II CATG 3 cut(s) 53, 386, 447
HspAI GCGC 1 cut(s) 705
Ksp22I TGATCA 1 cut(s) 801
Kzo9I GATC 2 cut(s) 289, 801
LmnI GCTCC 2 cut(s) 325, 773
Lsp1109I GCAGC 3 cut(s) 226, 266, 575
LweI GCATC 2 cut(s) 274, 434
MaeI CTAG 1 cut(s) 476
MaeIII GTNAC 4 cut(s) 345, 378, 478, 485
MalI GATC 2 cut(s) 291, 803
MboI GATC 2 cut(s) 289, 801
MboII GAAGA 2 cut(s) 36, 57
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 5 cut(s) 102, 193, 223, 232, 605
MluNI TGGCCA 1 cut(s) 340
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 162
Mox20I TGGCCA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 340
MseI TTAA 2 cut(s) 221, 462
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 340
MspA1I CMGCKG 2 cut(s) 458, 670
MspI CCGG 2 cut(s) 243, 309
MspR9I CCNGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 417, 667, 676, 698, 713
NdeII GATC 2 cut(s) 289, 801
NlaIII CATG 3 cut(s) 53, 386, 447
NmuCI GTSAC 2 cut(s) 345, 485
NspV TTCGAA 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 814
PctI GAATGC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 3 cut(s) 241, 256, 565
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 670
PspGI CCWGG 1 cut(s) 493
PspPI GGNCC 3 cut(s) 152, 311, 523
PstI CTGCAG 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 829
PvuII CAGCTG 2 cut(s) 458, 670
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 553
SaqAI TTAA 2 cut(s) 221, 462
SatI GCNGC 3 cut(s) 240, 255, 564
Sau3AI GATC 2 cut(s) 289, 801
Sau96I GGNCC 3 cut(s) 152, 311, 523
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 2 cut(s) 274, 434
SfcI CTRYAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 126
SinI GGWCC 2 cut(s) 152, 311
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 5 cut(s) 102, 193, 223, 232, 605
SsiI CCGC 2 cut(s) 86, 638
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 493
StyI CCWWGG 3 cut(s) 341, 354, 592
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 6 cut(s) 60, 126, 144, 711, 783, 895
TasI AATT 5 cut(s) 102, 193, 223, 232, 605
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 221, 462
Tru9I TTAA 2 cut(s) 221, 462
TscAI CASTG 2 cut(s) 745, 878
TseFI GTSAC 2 cut(s) 345, 485
TseI GCWGC 3 cut(s) 239, 254, 563
Tsp45I GTSAC 2 cut(s) 345, 485
TspDTI ATGAA 2 cut(s) 806, 824
TspRI CASTG 2 cut(s) 745, 878
VpaK11BI GGWCC 2 cut(s) 152, 311
XapI RAATTY 2 cut(s) 193, 605
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.