pycom15g26020

Peptidyl-prolyl cis-trans isomerase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
20657508 .. 20661646
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1788 bp
ATGGGAAAGAAGCAGCACAGCAAAGATCGAATGTTCATCACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAAGCCCAGCCCACCTCCACTCCTTTCAAACGCCTCCCCTTCTATTGTTGCGCGCTTACGTTTACGCCATTTGAAGACCCAGTGTGTACCGCAGACGGCAGCGTTTTTGATATACTGAATATAATTCCGTATATCAGAAAGTATGGTAAGCATCCTGTTACCGGAGTCCCGCTGAAGCAGGAGAATCTCATACCGCTAACGTTCCACAAGAATTCTGATGGAGAGTTTCAGTGCCCTGTTTTGAACAAAGTTTTCACTGAATTTACACACACAGTTGCTGTGAAGACAACAGGAAATGTCTTCTCCTATGAGGCAGTTAAAGAACTAAACATCAAGACCAAGAATTGGAAGGAGCTCCTCACAGATGAACCATTTTCCAAGGAAGACCTGATAACCATTCAGAATCCCAATGCACTTGACAGCAAGGTTCTAGTGGAGTTTGATCATGTTAAAAATAGTCTGAAAATTGATGATGAAGATTTTAAGAGAATGAGTGCAGACCCCACCTTTAACATTAATGTAAATGGAGATATCAAGCAGATGCTCAAGGAGCTTGGAACTGAAAAAGGAAGGCTAGCTGCACTGCATGGAGGAGGTGGCAGCAAGGCACAAAATGAACGGGCTGCTGCACTTGAAGCCATTTTAGCTGCAAGATCGCGTATTAAAGATGATCCGAAATCAAAATCGAATGGGGAGGTGAAAGCTCAGGCATATAGTATTGTGGATGCTGCTTCTGCTTCTGTGCATGGAAGAAGTGCTGCTGCCGCCAGAGCCACATCAAGTGACAAAACTGCTGCTCGAATTGCTATGCACAAGGCTGGTGAGAGGGCACCAGTGAATGCAAAGATGGTAAAGAGCAGATTCACCACGGGTGCTGCTTCCAGATCTTTCACTTCTACCGCCTTTACTCCTGTTACTGAAAATGAATTTGAATATGTCAAAGTTGAGAAGAATCCAAAAAAGAAAGGATATGTACAACTACACACAACACATGGTGATTTGAACATTGAGCTACACTGTGATATTGCCCCCAGAGCTTGCGAGAACTTCATCACTCTTTGTGAACGTGGCTATTATAACGGAGTAGGTTTTCATAGAAGCATTAGGAATTTTATGATTCAAGGTGGTGATCCTACTGGTACTGGAACAGGAGGGGAATCTATATGGGGAAAGCCTTTTAATGATGAAGTGAACTCCAAGTTACTTCACTCTGGAAGGGGTGTTGTTAGTATGGCTAACAGTGGGCCACACACTAATGGCTCCCAATTTTTCATCCTTTACAAATCTGCAAACCATTTGAACTACAAGCATACGGTTTTTGGTGGAGTTGTCGGTGGCTTGACCACATTGGCAATAATGGAAAAGGTTCCTGTTGATGATAATGACCAACCCTTGGAGGAAATTAAGATAAAAAGTGTCACAATTTTTGTTAATCCTTACACAGAGCCTGATGAAGAAGAAGAAGACAAGGCCAAAGCTGAAGAGAAAGCTCAGGATGAAGACAATGACAAGGTTGGGTCATGGTTTAGCAATCCTGGTACGGGAGTGGAATCTGGCCCTGGCGGTGGTGGTGGTGTTGGGAAATATTTGAAAGCAAGGAGTGCTCTGCCTGAACCGGCTGCTGTTGACGCTGGTCTGACAGAGCTTCCTTCAACAAAGAAAAGAAAATCAAGAGTTTCCGCGTCCAATTTTAATGATTTTTCTTCATGGTAG

Protein Analysis

596

Amino Acids

65.05

Weight (kDa)

7.99

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rtf2 PF04641 94 - 167 4.6e-06 Rtf2 RING-finger
Pro_isomerase PF00160 349 - 499 1.3e-51 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67530
fragaria_vesca FvH4_1g17680
malus_domestica MD02G1185800.v1.1 MD15G1307700.v1.1
prunus_persica Prupe.6G220900_v2.0.a1
pyrus_communis pycom02g15080 pycom15g26020
rosa_chinensis RchiOBHm_Chr2g0108011
rosa_laevigata RLG00000017633
rosa_multiflora Rmu_sc0001484.1_g000022
rosa_roxburghii Rroxscaffold_2G00135730
rosa_rugosa Rorug02G0149700
rosa_samantha Rh2AG198700 Rh2BG211600 Rh2CG203300
rosa_wichuraiana Rw2G015770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1152
AccB1I GGYRCC 2 cut(s) 71, 904
AccB7I CCANNNNNTGG 3 cut(s) 63, 420, 1468
AccII CGCG 3 cut(s) 128, 733, 1757
AciI CCGC 8 cut(s) 69, 165, 245, 269, 840, 975, 1638, 1755
AclI AACGTT 1 cut(s) 275
AclWI GGATC 2 cut(s) 740, 1199
AcsI RAATTY 4 cut(s) 286, 335, 1001, 1183
AcuI CTGAAG 2 cut(s) 269, 1575
AcyI GRCGYC 1 cut(s) 72
AdeI CACNNNGTG 1 cut(s) 1070
AfaI GTAC 4 cut(s) 163, 1050, 1216, 1615
AfiI CCNNNNNNNGG 6 cut(s) 63, 236, 420, 1468, 1616, 1640
AjnI CCWGG 2 cut(s) 1609, 1633
Alw21I GWGCWC 2 cut(s) 432, 1681
AlwI GGATC 2 cut(s) 740, 1199
AlwNI CAGNNNCTG 2 cut(s) 353, 1523
AoxI GGCC 4 cut(s) 54, 1319, 1545, 1630
ApoI RAATTY 4 cut(s) 286, 335, 1001, 1183
AseI ATTAAT 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 3 cut(s) 74, 128, 130
AspS9I GGNCC 3 cut(s) 54, 1319, 1631
AsuHPI GGTGA 6 cut(s) 31, 784, 908, 931, 1082, 1214
AsuNHI GCTAGC 1 cut(s) 649
BaeGI GKGCMC 2 cut(s) 311, 907
BaeI ACNNNNGTAYC 2 cut(s) 1605, 1638
BanI GGYRCC 2 cut(s) 71, 904
BanII GRGCYC 1 cut(s) 432
BbsI GAAGAC 6 cut(s) 156, 365, 367, 465, 1545, 1581
Bbv12I GWGCWC 2 cut(s) 432, 1681
BccI CCATC 2 cut(s) 287, 916
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 1611, 1635
BclI TGATCA 1 cut(s) 517
BfaI CTAG 2 cut(s) 506, 650
BfoI RGCGCY 1 cut(s) 75
BglII AGATCT 1 cut(s) 959
Bme1390I CCNGG 2 cut(s) 1611, 1635
BmgT120I GGNCC 3 cut(s) 54, 1319, 1631
BmiI GGNNCC 4 cut(s) 73, 906, 1336, 1443
BmrFI CCNGG 2 cut(s) 1611, 1635
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 3 cut(s) 235, 606, 790
BmtI GCTAGC 1 cut(s) 653
BmuI ACTGGG 1 cut(s) 149
BoxI GACNNNNGTC 1 cut(s) 1707
BpiI GAAGAC 6 cut(s) 156, 365, 367, 465, 1545, 1581
Bpu10I CCTNAGC 2 cut(s) 780, 1566
BpuEI CTTGAG 1 cut(s) 605
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 453, 942, 1467, 1633
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 236, 420, 1468, 1616, 1640
Bse118I RCCGGY 1 cut(s) 1690
Bse1I ACTGG 4 cut(s) 155, 908, 1216, 1222
BseBI CCWGG 2 cut(s) 1611, 1635
BseDI CCNNGG 4 cut(s) 453, 942, 1467, 1633
BseGI GGATG 4 cut(s) 226, 805, 1347, 1576
BseLI CCNNNNNNNGG 6 cut(s) 63, 236, 420, 1468, 1616, 1640
BseMII CTCAG 2 cut(s) 794, 1580
BseNI ACTGG 4 cut(s) 155, 908, 1216, 1222
BsePI GCGCGC 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 422, 681
BseSI GKGCMC 2 cut(s) 311, 907
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 3 cut(s) 591, 639, 687
Bsh1236I CGCG 3 cut(s) 128, 733, 1757
BshFI GGCC 4 cut(s) 56, 1321, 1547, 1632
BshNI GGYRCC 2 cut(s) 71, 904
BsiHKAI GWGCWC 2 cut(s) 432, 1681
BsiSI CCGG 2 cut(s) 237, 1691
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 6 cut(s) 63, 236, 420, 1468, 1616, 1640
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 4 cut(s) 56, 1321, 1547, 1632
Bsp1286I GDGCHC 4 cut(s) 311, 432, 907, 1681
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
BspACI CCGC 8 cut(s) 69, 165, 245, 269, 840, 975, 1638, 1755
BspANI GGCC 4 cut(s) 56, 1321, 1547, 1632
BspCNI CTCAG 2 cut(s) 793, 1579
BspFNI CGCG 3 cut(s) 128, 733, 1757
BspLI GGNNCC 4 cut(s) 73, 906, 1336, 1443
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 2 cut(s) 740, 1199
BspT107I GGYRCC 2 cut(s) 71, 904
BsrFI RCCGGY 1 cut(s) 1690
BsrGI TGTACA 1 cut(s) 1048
BsrI ACTGG 4 cut(s) 155, 908, 1216, 1222
BssAI RCCGGY 1 cut(s) 1690
BssECI CCNNGG 4 cut(s) 453, 942, 1467, 1633
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 453, 1467
Bst2UI CCWGG 2 cut(s) 1611, 1635
Bst4CI ACNGT 4 cut(s) 349, 1094, 1316, 1390
Bst6I CTCTTC 1 cut(s) 1551
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 1676
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 128, 651, 1114
BstDEI CTNAG 2 cut(s) 780, 1566
BstDSI CCRYGG 1 cut(s) 942
BstF5I GGATG 4 cut(s) 226, 805, 1347, 1576
BstFNI CGCG 3 cut(s) 128, 733, 1757
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 3 cut(s) 74, 128, 130
BstKTI GATC 6 cut(s) 28, 520, 731, 748, 962, 1207
BstMBI GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
BstNI CCWGG 2 cut(s) 1611, 1635
BstPAI GACNNNNGTC 1 cut(s) 1707
BstSCI CCNGG 2 cut(s) 1609, 1633
BstSLI GKGCMC 2 cut(s) 311, 907
BstUI CGCG 3 cut(s) 128, 733, 1757
BstV2I GAAGAC 6 cut(s) 156, 365, 367, 465, 1545, 1581
BstX2I RGATCY 1 cut(s) 959
BstYI RGATCY 1 cut(s) 959
BsuRI GGCC 4 cut(s) 56, 1321, 1547, 1632
BtgI CCRYGG 1 cut(s) 942
BtsCI GGATG 4 cut(s) 226, 805, 1347, 1576
BtsI GCAGTG 1 cut(s) 656
BtsIMutI CAGTG 7 cut(s) 162, 311, 330, 656, 915, 1090, 1321
Cac8I GCNNGC 3 cut(s) 128, 651, 1114
CaiI CAGNNNCTG 2 cut(s) 353, 1523
CfoI GCGC 3 cut(s) 74, 128, 130
Cfr10I RCCGGY 1 cut(s) 1690
Cfr13I GGNCC 3 cut(s) 54, 1319, 1631
CseI GACGC 2 cut(s) 1712, 1746
Csp6I GTAC 4 cut(s) 162, 1049, 1215, 1614
CviAII CATG 6 cut(s) 521, 662, 821, 1067, 1596, 1782
CviQI GTAC 4 cut(s) 162, 1049, 1215, 1614
DdeI CTNAG 2 cut(s) 780, 1566
DinI GGCGCC 1 cut(s) 73
DpnI GATC 6 cut(s) 27, 519, 730, 747, 961, 1206
DpnII GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
DraIII CACNNNGTG 1 cut(s) 1070
Eam1104I CTCTTC 1 cut(s) 1551
EarI CTCTTC 1 cut(s) 1551
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 453, 1467
Eco24I GRGCYC 1 cut(s) 432
Eco32I GATATC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 2 cut(s) 269, 1575
EcoICRI GAGCTC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 1609, 1633
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 2 cut(s) 453, 1467
EcoT38I GRGCYC 1 cut(s) 432
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 453, 1467
FaeI CATG 6 cut(s) 524, 665, 824, 1070, 1599, 1785
FaqI GGGAC 1 cut(s) 227
FatI CATG 6 cut(s) 520, 661, 820, 1066, 1595, 1781
FauI CCCGC 1 cut(s) 252
FbaI TGATCA 1 cut(s) 517
FokI GGATG 4 cut(s) 213, 812, 1334, 1583
FriOI GRGCYC 1 cut(s) 432
FspBI CTAG 2 cut(s) 506, 650
GlaI GCGC 3 cut(s) 73, 127, 129
GsaI CCCAGC 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 4 cut(s) 56, 1321, 1547, 1632
HapII CCGG 2 cut(s) 237, 1691
HgaI GACGC 2 cut(s) 1712, 1746
HhaI GCGC 3 cut(s) 74, 128, 130
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 524, 665, 824, 1070, 1599, 1785
Hin6I GCGC 3 cut(s) 72, 126, 128
HinP1I GCGC 3 cut(s) 72, 126, 128
HincII GTYRAC 1 cut(s) 1702
HindII GTYRAC 1 cut(s) 1702
HinfI GANTC 8 cut(s) 240, 259, 478, 936, 1027, 1192, 1232, 1625
HpaII CCGG 2 cut(s) 237, 1691
HphI GGTGA 6 cut(s) 31, 784, 908, 931, 1082, 1214
Hpy166II GTNNAC 5 cut(s) 138, 162, 1139, 1267, 1702
Hpy188I TCNGA 6 cut(s) 212, 292, 477, 537, 750, 1713
Hpy188III TCNNGA 5 cut(s) 409, 957, 1287, 1568, 1746
Hpy8I GTNNAC 5 cut(s) 138, 162, 1139, 1267, 1702
HpyAV CCTTC 5 cut(s) 124, 418, 639, 1284, 1734
HpyCH4III ACNGT 4 cut(s) 349, 1094, 1316, 1390
HpyCH4IV ACGT 3 cut(s) 134, 275, 1141
HpyF3I CTNAG 2 cut(s) 780, 1566
HpySE526I ACGT 3 cut(s) 134, 275, 1141
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 524, 665, 824, 1070, 1599, 1785
HspAI GCGC 3 cut(s) 72, 126, 128
KasI GGCGCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
LmnI GCTCC 4 cut(s) 427, 435, 625, 1340
LweI GCATC 3 cut(s) 235, 606, 790
MaeI CTAG 2 cut(s) 506, 650
MaeII ACGT 3 cut(s) 134, 275, 1141
MaeIII GTNAC 5 cut(s) 232, 857, 988, 1275, 1492
MalI GATC 6 cut(s) 27, 519, 730, 747, 961, 1206
MboI GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
MflI RGATCY 1 cut(s) 959
MhlI GDGCHC 4 cut(s) 311, 432, 907, 1681
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 249
MroXI GAANNNNTTC 1 cut(s) 1440
MslI CAYNNNNRTG 1 cut(s) 1329
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 2 cut(s) 237, 1691
MspR9I CCNGG 2 cut(s) 1611, 1635
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 2 cut(s) 1611, 1635
MvnI CGCG 3 cut(s) 128, 733, 1757
NarI GGCGCC 1 cut(s) 72
NdeII GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 6 cut(s) 524, 665, 824, 1070, 1599, 1785
NlaIV GGNNCC 4 cut(s) 73, 906, 1336, 1443
NmuCI GTSAC 2 cut(s) 857, 1492
PauI GCGCGC 1 cut(s) 126
PctI GAATGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 7 cut(s) 259, 478, 936, 1027, 1192, 1232, 1625
PflMI CCANNNNNTGG 3 cut(s) 63, 420, 1468
PleI GAGTC 1 cut(s) 248
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 1707
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 1 cut(s) 1152
Psp124BI GAGCTC 1 cut(s) 432
Psp1406I AACGTT 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 1609, 1633
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 2 cut(s) 1609, 1633
PspN4I GGNNCC 4 cut(s) 73, 906, 1336, 1443
PspPI GGNCC 3 cut(s) 54, 1319, 1631
PstNI CAGNNNCTG 2 cut(s) 353, 1523
PsuI RGATCY 1 cut(s) 959
PteI GCGCGC 1 cut(s) 126
RsaI GTAC 4 cut(s) 163, 1050, 1216, 1615
RsaNI GTAC 4 cut(s) 162, 1049, 1215, 1614
RseI CAYNNNNRTG 1 cut(s) 1329
SacI GAGCTC 1 cut(s) 432
Sau3AI GATC 6 cut(s) 25, 517, 728, 745, 959, 1204
Sau96I GGNCC 3 cut(s) 54, 1319, 1631
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 1611, 1635
SduI GDGCHC 4 cut(s) 311, 432, 907, 1681
SfaNI GCATC 3 cut(s) 235, 606, 790
SfoI GGCGCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 1329
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
SsiI CCGC 8 cut(s) 69, 165, 245, 269, 840, 975, 1638, 1755
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 1661
SspMI CTAG 2 cut(s) 506, 650
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 1609, 1633
StyI CCWWGG 2 cut(s) 453, 1467
TaaI ACNGT 4 cut(s) 349, 1094, 1316, 1390
TaiI ACGT 3 cut(s) 137, 278, 1144
TaqI TCGA 3 cut(s) 28, 761, 874
TatI WGTACW 1 cut(s) 1048
TauI GCSGC 2 cut(s) 72, 842
TfiI GAWTC 7 cut(s) 259, 478, 936, 1027, 1192, 1232, 1625
TscAI CASTG 7 cut(s) 162, 311, 337, 663, 915, 1097, 1321
TseFI GTSAC 2 cut(s) 857, 1492
Tsp45I GTSAC 2 cut(s) 857, 1492
TspGWI ACGGA 3 cut(s) 62, 192, 1170
TspRI CASTG 7 cut(s) 162, 311, 337, 663, 915, 1097, 1321
Van91I CCANNNNNTGG 3 cut(s) 63, 420, 1468
VspI ATTAAT 1 cut(s) 591
XapI RAATTY 4 cut(s) 286, 335, 1001, 1183
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 2 cut(s) 506, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.