pycom15g28090

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
23784171 .. 23787600
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1515 bp
ATGGGTATTTTGGAGAAGAAGTCCATGGCTGGGAGCCTTCTGCTATTCCTTTTAGCAGTTTCAGCTGCTACAGCTGATGAAGATGTGTTTATCGGCGTGAATATAGGGACAGACCTCTCAGACATGCCACACCCAACGCAAGTTGTAGCCCTCCTGAAAGCTCAGCAAATTCGACATGTCCGGTTATATGACGCTGACCGTGCCATGCTTGTTGCACTTGCAAACACAGGAATTAAAGTTATGATATCTGTCCCGAATGAGCAGATCCTTGGAATTGGCCAATCTAATGCAACTGCAGCTAATTGGGTATCCCAGAATGTAGTAGCACATTACCCAGCTACAAATATCACAGCCATAGCTGTTGGCTCAGAGGTTCTTACCACCCTCCCAAATGCTGCAAAAATCCTGGTCAATGCTCTCAAGTACATTCAATCAGCTCTTGTGGCATCCAATCTTGACCGCCAAATCAAAGTTTCAACTCCTCTTTCTTCCTCCATTATCCTTGATTCGTTCCCACCTTCCCAAGCCTTCTTTAATCGCTCACTGAATCCAGTTTTGGTCCCCATGCTTAGTTTCTTGCAGTCCACAGGATCGTTTCTCATGCTCAACATATACCCATACTACGATTACATGCAATCAAATGGTGTCATTCCATTAGATTATGCACTCCTCAAATCCCTCCCTCCAAACAAAGAAGCTATTGATTCCAATACGCTTCTTCATTACGCTAATGTTTTTGATGCTGTAGTGGACGCAGCATATTATGCCATGGCTTTCCTTAACTTCACTAATGTTCCGATCATAGTGACAGAATCAGGCTGGCCTTCTAAGGGTGATTCTAATGAGCCCGATGCAACATTAGAAAATGCCAATACTTACAACAGCAATTTGATAAGGCACGTGCTGAACAAAACTGGAACTCCCAAACATCCTGGACTTGCTGTTAGTACTTTCATTTATGAACTCTATAATGAGGACACAAAACCTGGACCCGTCTCAGAGAAGAACTGGGGGCTGTTTGATGCAAATGGGACACCTATCTACATTTTACGCTTGACAGGATCAGGAGCAGTATTAGCAAATGATACAACAAACCAAACTTTCTGTACTATGAAGGATGGAGCTGATCCGAAAATGCTTCAGGCTGCGCTAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCAGCTTTACTGCAGGGACAACCATGCTACGAGCCTGACGATGTGGCTGCACATGCAACATATGCATTTGATACTTACTACCATCAGATGGGGATGACTTCCGCGTCATGCGACTTCAATGGAGTGGCTACAATCACCACAACAGATCCAAGCCATGGTTCCTGCATATTTCCGGGAAGTCTTGGCAAGAATGGCAGCATTGCAAACATCACGGCTCCATCGTTAAATTCGACTAGTGTGGATTCTTCTTCCTACGACTTCCACAGCGATGCTTTTAAAAGCATTCTGCTGATACTTGGAGTTGTCCTCAGCAGTGCAGTTTTCTTGTAG

Protein Analysis

505

Amino Acids

53.98

Weight (kDa)

4.91

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 31 - 350 6.1e-79 Glycosyl hydrolases family 17
X8 PF07983 368 - 439 2.1e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011672)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1288
AccB7I CCANNNNNTGG 2 cut(s) 1273, 1340
AccII CGCG 1 cut(s) 1289
AciI CCGC 2 cut(s) 460, 1287
AclWI GGATC 5 cut(s) 259, 598, 1069, 1121, 1325
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 168, 1411
AcuI CTGAAG 1 cut(s) 1124
AcvI CACGTG 1 cut(s) 901
AfaI GTAC 3 cut(s) 425, 949, 1108
AfiI CCNNNNNNNGG 4 cut(s) 30, 830, 1273, 1340
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 3 cut(s) 431, 477, 1303
AhlI ACTAGT 1 cut(s) 1418
AjnI CCWGG 4 cut(s) 405, 931, 985, 1168
AjuI GAANNNNNNNTTGG 4 cut(s) 539, 571, 1327, 1359
Alw26I GTCTC 1 cut(s) 1000
AlwI GGATC 5 cut(s) 259, 598, 1069, 1121, 1325
AoxI GGCC 2 cut(s) 277, 821
ApeKI GCWGC 7 cut(s) 65, 296, 395, 755, 1145, 1232, 1380
ApoI RAATTY 2 cut(s) 168, 1411
AspLEI GCGC 1 cut(s) 1150
AspS9I GGNCC 3 cut(s) 559, 989, 1166
AsuC2I CCSGG 1 cut(s) 1359
AsuHPI GGTGA 2 cut(s) 845, 1312
AvaII GGWCC 3 cut(s) 559, 989, 1166
BalI TGGCCA 1 cut(s) 279
BanII GRGCYC 1 cut(s) 849
BbrPI CACGTG 1 cut(s) 901
BbvCI CCTCAGC 1 cut(s) 1493
BbvI GCAGC 7 cut(s) 52, 308, 382, 767, 1132, 1219, 1392
BccI CCATC 4 cut(s) 1112, 1267, 1275, 1411
BceAI ACGGC 1 cut(s) 1413
BcgI CGANNNNNNTGC 2 cut(s) 1214, 1248
BciT130I CCWGG 4 cut(s) 407, 933, 987, 1170
BciVI GTATCC 1 cut(s) 319
BcnI CCSGG 1 cut(s) 1359
BcoDI GTCTC 1 cut(s) 1000
BcuI ACTAGT 1 cut(s) 1418
BfaI CTAG 2 cut(s) 1151, 1419
BfmI CTRYAG 4 cut(s) 69, 294, 744, 1196
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 7 cut(s) 66, 297, 396, 756, 1146, 1233, 1381
BlpI GCTNAGC 2 cut(s) 162, 1186
BlsI GCNGC 7 cut(s) 67, 298, 397, 757, 1147, 1234, 1382
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 5 cut(s) 407, 933, 987, 1170, 1359
Bme18I GGWCC 3 cut(s) 559, 989, 1166
BmgT120I GGNCC 3 cut(s) 559, 989, 1166
BmiI GGNNCC 5 cut(s) 35, 561, 991, 1345, 1401
BmrFI CCNGG 5 cut(s) 407, 933, 987, 1170, 1359
BmrI ACTGGG 1 cut(s) 1018
BmsI GCATC 5 cut(s) 455, 730, 841, 1012, 1444
BmuI ACTGGG 1 cut(s) 1018
BplI GAGNNNNNCTC 2 cut(s) 1476, 1508
Bpu10I CCTNAGC 1 cut(s) 1493
Bpu1102I GCTNAGC 2 cut(s) 162, 1186
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 1359
BsaAI YACGTR 1 cut(s) 901
BsaJI CCNNGG 4 cut(s) 24, 268, 768, 1339
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 904, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 830, 1273, 1340
Bse1I ACTGG 3 cut(s) 551, 919, 1013
Bse3DI GCAATG 1 cut(s) 1383
BseBI CCWGG 4 cut(s) 407, 933, 987, 1170
BseDI CCNNGG 4 cut(s) 24, 268, 768, 1339
BseGI GGATG 4 cut(s) 446, 928, 1123, 1284
BseLI CCNNNNNNNGG 4 cut(s) 30, 830, 1273, 1340
BseMI GCAATG 1 cut(s) 1383
BseMII CTCAG 6 cut(s) 132, 176, 381, 1011, 1200, 1507
BseNI ACTGG 3 cut(s) 551, 919, 1013
BseRI GAGGAG 2 cut(s) 471, 659
BseXI GCAGC 7 cut(s) 52, 308, 382, 767, 1132, 1219, 1392
BseYI CCCAGC 2 cut(s) 29, 334
BsgI GTGCAG 1 cut(s) 1218
Bsh1236I CGCG 1 cut(s) 1289
BshFI GGCC 2 cut(s) 279, 823
BsiSI CCGG 2 cut(s) 181, 1358
BslFI GGGAC 5 cut(s) 121, 236, 545, 1045, 1215
BslI CCNNNNNNNGG 4 cut(s) 30, 830, 1273, 1340
BsmAI GTCTC 1 cut(s) 1000
BsmBI CGTCTC 1 cut(s) 1000
BsmFI GGGAC 5 cut(s) 121, 236, 545, 1045, 1215
BsmI GAATGC 1 cut(s) 1467
BsnI GGCC 2 cut(s) 279, 823
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
Bsp1720I GCTNAGC 2 cut(s) 162, 1186
Bsp19I CCATGG 3 cut(s) 24, 768, 1339
BspACI CCGC 2 cut(s) 460, 1287
BspANI GGCC 2 cut(s) 279, 823
BspCNI CTCAG 6 cut(s) 131, 175, 380, 1010, 1199, 1506
BspFNI CGCG 1 cut(s) 1289
BspLI GGNNCC 5 cut(s) 35, 561, 991, 1345, 1401
BspMAI CTGCAG 2 cut(s) 298, 1200
BspPI GGATC 5 cut(s) 259, 598, 1069, 1121, 1325
BsrDI GCAATG 1 cut(s) 1383
BsrI ACTGG 3 cut(s) 551, 919, 1013
BssECI CCNNGG 4 cut(s) 24, 268, 768, 1339
BssMI GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
BssT1I CCWWGG 4 cut(s) 24, 268, 768, 1339
Bst2UI CCWGG 4 cut(s) 407, 933, 987, 1170
Bst4CI ACNGT 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 764, 1247
BstBAI YACGTR 1 cut(s) 901
BstC8I GCNNGC 1 cut(s) 821
BstDEI CTNAG 8 cut(s) 118, 162, 367, 569, 828, 997, 1186, 1493
BstDSI CCRYGG 3 cut(s) 24, 768, 1339
BstF5I GGATG 4 cut(s) 446, 928, 1123, 1284
BstFNI CGCG 1 cut(s) 1289
BstHHI GCGC 1 cut(s) 1150
BstKTI GATC 6 cut(s) 267, 593, 801, 1064, 1129, 1333
BstMAI GTCTC 1 cut(s) 1000
BstMBI GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
BstNI CCWGG 4 cut(s) 407, 933, 987, 1170
BstNSI RCATGY 4 cut(s) 127, 179, 634, 1241
BstSCI CCNGG 5 cut(s) 405, 931, 985, 1168, 1357
BstSFI CTRYAG 4 cut(s) 69, 294, 744, 1196
BstUI CGCG 1 cut(s) 1289
BstV1I GCAGC 7 cut(s) 52, 308, 382, 767, 1132, 1219, 1392
BstX2I RGATCY 2 cut(s) 264, 1330
BstYI RGATCY 2 cut(s) 264, 1330
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 2 cut(s) 279, 823
BtgI CCRYGG 3 cut(s) 24, 768, 1339
BtgZI GCGATG 1 cut(s) 1467
BtsCI GGATG 4 cut(s) 446, 928, 1123, 1284
BtsI GCAGTG 1 cut(s) 1504
BtsIMutI CAGTG 2 cut(s) 542, 1504
Cac8I GCNNGC 1 cut(s) 821
CfoI GCGC 1 cut(s) 1150
Cfr13I GGNCC 3 cut(s) 559, 989, 1166
CseI GACGC 3 cut(s) 200, 761, 1278
Csp6I GTAC 3 cut(s) 424, 948, 1107
CviQI GTAC 3 cut(s) 424, 948, 1107
DdeI CTNAG 8 cut(s) 118, 162, 367, 569, 828, 997, 1186, 1493
DpnI GATC 6 cut(s) 266, 592, 800, 1063, 1128, 1332
DpnII GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
DraI TTTAAA 1 cut(s) 1462
DrdI GACNNNNNNGTC 1 cut(s) 1288
DseDI GACNNNNNNGTC 1 cut(s) 1288
EaeI YGGCCR 1 cut(s) 277
Eco130I CCWWGG 4 cut(s) 24, 268, 768, 1339
Eco24I GRGCYC 1 cut(s) 849
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 559, 989, 1166
Eco57I CTGAAG 1 cut(s) 1124
Eco72I CACGTG 1 cut(s) 901
EcoRII CCWGG 4 cut(s) 405, 931, 985, 1168
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 4 cut(s) 24, 268, 768, 1339
EcoT22I ATGCAT 1 cut(s) 1252
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 4 cut(s) 24, 268, 768, 1339
Esp3I CGTCTC 1 cut(s) 1000
FaqI GGGAC 5 cut(s) 121, 236, 545, 1045, 1215
FauNDI CATATG 1 cut(s) 1246
Fnu4HI GCNGC 7 cut(s) 66, 297, 396, 756, 1146, 1233, 1381
FokI GGATG 4 cut(s) 433, 915, 1130, 1291
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 7 cut(s) 66, 297, 396, 756, 1146, 1233, 1381
FspBI CTAG 2 cut(s) 1151, 1419
GlaI GCGC 1 cut(s) 1149
GluI GCNGC 7 cut(s) 66, 297, 396, 756, 1146, 1233, 1381
GsaI CCCAGC 2 cut(s) 33, 338
HaeIII GGCC 2 cut(s) 279, 823
HapII CCGG 2 cut(s) 181, 1358
HgaI GACGC 3 cut(s) 200, 761, 1278
HhaI GCGC 1 cut(s) 1150
Hin6I GCGC 1 cut(s) 1148
HinP1I GCGC 1 cut(s) 1148
HinfI GANTC 6 cut(s) 506, 547, 704, 812, 836, 1427
HpaII CCGG 2 cut(s) 181, 1358
HphI GGTGA 2 cut(s) 845, 1312
Hpy166II GTNNAC 3 cut(s) 585, 751, 1166
Hpy188I TCNGA 6 cut(s) 121, 370, 798, 1000, 1131, 1272
Hpy188III TCNNGA 4 cut(s) 154, 253, 455, 1065
Hpy8I GTNNAC 3 cut(s) 585, 751, 1166
HpyAV CCTTC 5 cut(s) 47, 528, 538, 834, 1108
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 900
HpyF3I CTNAG 8 cut(s) 118, 162, 367, 569, 828, 997, 1186, 1493
HpySE526I ACGT 1 cut(s) 900
HspAI GCGC 1 cut(s) 1148
Kzo9I GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
LmnI GCTCC 4 cut(s) 33, 1067, 1121, 1405
Lsp1109I GCAGC 7 cut(s) 52, 308, 382, 767, 1132, 1219, 1392
LweI GCATC 5 cut(s) 455, 730, 841, 1012, 1444
MaeI CTAG 2 cut(s) 1151, 1419
MaeII ACGT 1 cut(s) 900
MaeIII GTNAC 1 cut(s) 805
MalI GATC 6 cut(s) 266, 592, 800, 1063, 1128, 1332
MboI GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
MboII GAAGA 7 cut(s) 28, 92, 480, 710, 1015, 1422, 1425
MflI RGATCY 2 cut(s) 264, 1330
MhlI GDGCHC 1 cut(s) 849
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 6 cut(s) 168, 231, 273, 301, 886, 1411
MluNI TGGCCA 1 cut(s) 279
Mox20I TGGCCA 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 1252
MscI TGGCCA 1 cut(s) 279
MseI TTAA 5 cut(s) 234, 534, 780, 1409, 1461
MslI CAYNNNNRTG 1 cut(s) 1452
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 2 cut(s) 65, 74
MspI CCGG 2 cut(s) 181, 1358
MspR9I CCNGG 5 cut(s) 407, 933, 987, 1170, 1359
Mva1269I GAATGC 1 cut(s) 1467
MvaI CCWGG 4 cut(s) 407, 933, 987, 1170
MvnI CGCG 1 cut(s) 1289
NciI CCSGG 1 cut(s) 1359
NcoI CCATGG 3 cut(s) 24, 768, 1339
NdeI CATATG 1 cut(s) 1246
NdeII GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
NlaIV GGNNCC 5 cut(s) 35, 561, 991, 1345, 1401
NmuCI GTSAC 1 cut(s) 805
NsiI ATGCAT 1 cut(s) 1252
NspI RCATGY 4 cut(s) 127, 179, 634, 1241
PciI ACATGT 1 cut(s) 175
PcsI WCGNNNNNNNCGW 3 cut(s) 1221, 1403, 1412
PctI GAATGC 1 cut(s) 1467
PfeI GAWTC 6 cut(s) 506, 547, 704, 812, 836, 1427
PflMI CCANNNNNTGG 2 cut(s) 1273, 1340
PfoI TCCNGGA 2 cut(s) 931, 1357
PkrI GCNGC 7 cut(s) 67, 298, 397, 757, 1147, 1234, 1382
PmaCI CACGTG 1 cut(s) 901
PmlI CACGTG 1 cut(s) 901
Ppu21I YACGTR 1 cut(s) 901
PscI ACATGT 1 cut(s) 175
Psp6I CCWGG 4 cut(s) 405, 931, 985, 1168
PspCI CACGTG 1 cut(s) 901
PspFI CCCAGC 2 cut(s) 29, 334
PspGI CCWGG 4 cut(s) 405, 931, 985, 1168
PspN4I GGNNCC 5 cut(s) 35, 561, 991, 1345, 1401
PspPI GGNCC 3 cut(s) 559, 989, 1166
PstI CTGCAG 2 cut(s) 298, 1200
PsuI RGATCY 2 cut(s) 264, 1330
PvuII CAGCTG 2 cut(s) 65, 74
RsaI GTAC 3 cut(s) 425, 949, 1108
RsaNI GTAC 3 cut(s) 424, 948, 1107
RseI CAYNNNNRTG 1 cut(s) 1452
SaqAI TTAA 5 cut(s) 234, 534, 780, 1409, 1461
SatI GCNGC 7 cut(s) 66, 297, 396, 756, 1146, 1233, 1381
Sau3AI GATC 6 cut(s) 264, 590, 798, 1061, 1126, 1330
Sau96I GGNCC 3 cut(s) 559, 989, 1166
ScaI AGTACT 1 cut(s) 949
ScrFI CCNGG 5 cut(s) 407, 933, 987, 1170, 1359
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 5 cut(s) 455, 730, 841, 1012, 1444
SfcI CTRYAG 4 cut(s) 69, 294, 744, 1196
SinI GGWCC 3 cut(s) 559, 989, 1166
SmiMI CAYNNNNRTG 1 cut(s) 1452
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 1418
Sse9I AATT 6 cut(s) 168, 231, 273, 301, 886, 1411
SsiI CCGC 2 cut(s) 460, 1287
SspMI CTAG 2 cut(s) 1151, 1419
StyD4I CCNGG 5 cut(s) 405, 931, 985, 1168, 1357
StyI CCWWGG 4 cut(s) 24, 268, 768, 1339
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 903
TaqI TCGA 2 cut(s) 172, 1415
TasI AATT 6 cut(s) 168, 231, 273, 301, 886, 1411
TatI WGTACW 3 cut(s) 423, 947, 1106
TfiI GAWTC 6 cut(s) 506, 547, 704, 812, 836, 1427
Tru1I TTAA 5 cut(s) 234, 534, 780, 1409, 1461
Tru9I TTAA 5 cut(s) 234, 534, 780, 1409, 1461
TscAI CASTG 2 cut(s) 549, 1504
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 7 cut(s) 65, 296, 395, 755, 1145, 1232, 1380
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 5 cut(s) 93, 710, 943, 975, 1127
TspRI CASTG 2 cut(s) 549, 1504
Van91I CCANNNNNTGG 2 cut(s) 1273, 1340
VpaK11BI GGWCC 3 cut(s) 559, 989, 1166
XapI RAATTY 2 cut(s) 168, 1411
XceI RCATGY 4 cut(s) 127, 179, 634, 1241
XspI CTAG 2 cut(s) 1151, 1419
ZrmI AGTACT 1 cut(s) 949
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.