Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009071

Physical Location & Seq

Genomic Coordinates Forward (+)

29849506 .. 29853543

Gene Structure 4038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTTCGGCCCCTTCGAAGCTCTACGCCGACGATGTGAGCCTTCTGATGGTTTTGCTGGACACGAACCCTTTCTTCTGGAGCTCATCCAATCTCCCGTTCTCCAAGTTTCTCCCCCACGTACTTACGTTTCTGAACTCGATTCTGCTGCTCAATCAACTCAACCAGGTGGTGGTTATTGCCACGGGGTACAATTCCTGCAGCTACATCTACGATTCTTCTTCGGACTCGAACCAGGGCTCTGATCATGGAAGAATAATGCCGGCGCGGTGCTCTAACTTGTTGCAGAAGCTGGAGGAATTCGTGATCAAAGACGAGCAATTGTTCAAAGAAGGGTCGAGAGAAGGGATTTCTTCTTCTCTGCTATCCGGGTCTTTATCAATGGCTCTTTGTTACAGAGAGTTTTTCGATCAGGGCCACTTCATCCTCAACCTCGGATTTTATGCTTGCAGGGATCGATCGGATGGACCTGAACAATATGTTGCAATCATGAATTCAATATTTTCTGCACAGCGTTCTATGGTTCCTATAGATTCTTGCTATATGGGATCGAGCAACTCTGCCTTCCTACAGCAGGCTTCATATATTACTGGTGGTGTGTATCTGAAGCCCCAACAACCAAATGGACTGTTTCAGTATCTCTCGACAGTTTTTGCAACTGATTTGCATTCTCGAGCATTTTTACAGCTTCCTAAGTCTCTCGGTGTGGATTTTCGTGCCTCGTGTTTTTGCCATAAGAAGACAATAGACATGGGCTACATTTGTTCTGTGTGCTTGTCCATTTTTTGTAAGCATCACAAGAAATGTTCAACTTGTGGGTCAGTATTTGGTCAAGCCCAGTTAGATGCTTCCTCAACATCCAACAGGAAAAGAAAGACGCCAGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

297

Amino Acids

32.9

Weight (kDa)

7.94

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb4	PF03850	13 - 273	1.9e-85	Transcription factor Tfb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18340
fragaria_vesca	FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720 FvH4_2g26720
malus_domestica	MD15G1351400.v1.1
prunus_persica	Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1 Prupe.1G500100_v2.0.a1
pyrus_communis	pycom15g31380
rosa_chinensis	RchiOBHm_Chr6g0295621
rosa_laevigata	RLG00000011784
rosa_multiflora	Rmu_sc0013988.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172310
rosa_rugosa	Rorug06G0252900
rosa_samantha	Rh6BG374000 Rh6CG380300 Rh6DG366900
rosa_wichuraiana	Rw6G031930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	268
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	2 cut(s)	462, 556
AcsI	RAATTY	2 cut(s)	299, 493
AcuI	CTGAAG	1 cut(s)	626
AcyI	GRCGYC	1 cut(s)	878
AfaI	GTAC	2 cut(s)	123, 191
AfiI	CCNNNNNNNGG	3 cut(s)	49, 172, 574
AgsI	TTSAA	3 cut(s)	328, 498, 810
AjnI	CCWGG	2 cut(s)	165, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	5 cut(s)	22, 84, 204, 292, 688
AluI	AGCT	5 cut(s)	22, 84, 204, 292, 688
Alw21I	GWGCWC	2 cut(s)	86, 275
Alw26I	GTCTC	2 cut(s)	702, 878
AlwI	GGATC	2 cut(s)	462, 556
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	672
AoxI	GGCC	2 cut(s)	9, 415
ApeKI	GCWGC	2 cut(s)	148, 201
ApoI	RAATTY	2 cut(s)	299, 493
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	10, 415, 467
AsuC2I	CCSGG	1 cut(s)	370
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	672
AvaII	GGWCC	1 cut(s)	467
BanII	GRGCYC	2 cut(s)	86, 242
BauI	CACGAG	1 cut(s)	721
BbsI	GAAGAC	1 cut(s)	746
Bbv12I	GWGCWC	2 cut(s)	86, 275
BbvI	GCAGC	2 cut(s)	135, 213
BccI	CCATC	2 cut(s)	43, 458
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	167, 236
BclI	TGATCA	2 cut(s)	244, 306
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	702, 878
BfmI	CTRYAG	3 cut(s)	199, 528, 569
BisI	GCNGC	2 cut(s)	149, 202
BlsI	GCNGC	2 cut(s)	150, 203
Bme1390I	CCNGG	3 cut(s)	167, 236, 370
Bme18I	GGWCC	1 cut(s)	467
BmeT110I	CYCGRG	1 cut(s)	672
BmgT120I	GGNCC	3 cut(s)	10, 415, 467
BmiI	GGNNCC	2 cut(s)	12, 525
BmrFI	CCNGG	3 cut(s)	167, 236, 370
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	2 cut(s)	802, 835
BmuI	ACTGGG	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	746
BpmI	CTGGAG	2 cut(s)	100, 314
Bpu14I	TTCGAA	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	183, 235, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 172, 574
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	595, 838
BseBI	CCWGG	2 cut(s)	167, 236
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	183, 235, 433
BseGI	GGATG	4 cut(s)	86, 423, 469, 857
BseLI	CCNNNNNNNGG	3 cut(s)	49, 172, 574
BseNI	ACTGG	2 cut(s)	595, 838
BseXI	GCAGC	2 cut(s)	135, 213
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	2 cut(s)	11, 417
BshVI	ATCGAT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	86, 275
BsiHKCI	CYCGRG	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	263, 369
BslI	CCNNNNNNNGG	3 cut(s)	49, 172, 574
BsmAI	GTCTC	2 cut(s)	702, 878
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	2 cut(s)	11, 417
BsoBI	CYCGRG	1 cut(s)	672
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	3 cut(s)	86, 242, 275
Bsp143I	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	11, 417
BspDI	ATCGAT	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	2 cut(s)	12, 525
BspMAI	CTGCAG	1 cut(s)	203
BspPI	GGATC	2 cut(s)	462, 556
BspT104I	TTCGAA	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	595, 838
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	183, 235, 433
BssMI	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
BssNI	GRCGYC	1 cut(s)	878
BssSI	CACGAG	1 cut(s)	721
Bst2BI	CACGAG	1 cut(s)	721
Bst2UI	CCWGG	2 cut(s)	167, 236
Bst4CI	ACNGT	2 cut(s)	630, 649
BstACI	GRCGYC	1 cut(s)	878
BstBAI	YACGTR	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	264, 448, 576
BstDEI	CTNAG	1 cut(s)	693
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	4 cut(s)	86, 423, 469, 857
BstFNI	CGCG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	6 cut(s)	247, 309, 412, 457, 461, 551
BstMAI	GTCTC	2 cut(s)	702, 878
BstMBI	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
BstMCI	CGRYCG	1 cut(s)	461
BstNI	CCWGG	2 cut(s)	167, 236
BstSCI	CCNGG	3 cut(s)	165, 234, 368
BstSFI	CTRYAG	3 cut(s)	199, 528, 569
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	135, 213
BstV2I	GAAGAC	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	11, 417
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	86, 423, 469, 857
Cac8I	GCNNGC	3 cut(s)	264, 448, 576
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	489
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	10, 415, 467
ClaI	ATCGAT	1 cut(s)	457
CseI	GACGC	1 cut(s)	886
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	122, 190
CviAII	CATG	4 cut(s)	248, 490, 751, 888
CviQI	GTAC	2 cut(s)	122, 190
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	6 cut(s)	246, 308, 411, 456, 460, 550
DpnII	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	2 cut(s)	86, 242
Eco47I	GGWCC	1 cut(s)	467
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	626
Eco88I	CYCGRG	1 cut(s)	672
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoRI	GAATTC	2 cut(s)	299, 493
EcoRII	CCWGG	2 cut(s)	165, 234
EcoT38I	GRGCYC	2 cut(s)	86, 242
FaeI	CATG	4 cut(s)	251, 493, 754, 891
FatI	CATG	4 cut(s)	247, 489, 750, 887
FbaI	TGATCA	2 cut(s)	244, 306
Fnu4HI	GCNGC	2 cut(s)	149, 202
FokI	GGATG	4 cut(s)	73, 410, 476, 844
FriOI	GRGCYC	2 cut(s)	86, 242
Fsp4HI	GCNGC	2 cut(s)	149, 202
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	2 cut(s)	149, 202
GsuI	CTGGAG	2 cut(s)	100, 314
HaeIII	GGCC	2 cut(s)	11, 417
HapII	CCGG	2 cut(s)	263, 369
HgaI	GACGC	1 cut(s)	886
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	878
Hin1II	CATG	4 cut(s)	251, 493, 754, 891
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	4 cut(s)	142, 215, 227, 533
HpaII	CCGG	2 cut(s)	263, 369
Hpy188I	TCNGA	7 cut(s)	48, 135, 226, 244, 437, 463, 606
Hpy188III	TCNNGA	6 cut(s)	79, 304, 339, 490, 643, 672
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	5 cut(s)	24, 53, 326, 338, 574
HpyCH4III	ACNGT	2 cut(s)	630, 649
HpyCH4IV	ACGT	2 cut(s)	120, 128
HpyCH4V	TGCA	7 cut(s)	201, 286, 450, 485, 509, 656, 667
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	2 cut(s)	120, 128
Hsp92I	GRCGYC	1 cut(s)	878
Hsp92II	CATG	4 cut(s)	251, 493, 754, 891
HspAI	GCGC	1 cut(s)	266
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Ksp22I	TGATCA	2 cut(s)	244, 306
Kzo9I	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	2 cut(s)	135, 213
LweI	GCATC	2 cut(s)	802, 835
MabI	ACCWGGT	1 cut(s)	165
MaeII	ACGT	2 cut(s)	120, 128
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	6 cut(s)	246, 308, 411, 456, 460, 550
MboI	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
MboII	GAAGA	7 cut(s)	67, 210, 213, 264, 345, 348, 751
MfeI	CAATTG	1 cut(s)	320
MhlI	GDGCHC	3 cut(s)	86, 242, 275
MluCI	AATT	4 cut(s)	193, 299, 320, 493
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	885
MnlI	CCTC	5 cut(s)	289, 437, 443, 730, 862
MroNI	GCCGGC	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	71
MspI	CCGG	2 cut(s)	263, 369
MspR9I	CCNGG	3 cut(s)	167, 236, 370
MunI	CAATTG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	2 cut(s)	167, 236
MvnI	CGCG	1 cut(s)	268
NaeI	GCCGGC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
NgoMIV	GCCGGC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	251, 493, 754, 891
NlaIV	GGNNCC	2 cut(s)	12, 525
NspV	TTCGAA	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	672
PagI	TCATGA	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	667
PdiI	GCCGGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	142, 215, 533
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	150, 203
Ple19I	CGATCG	1 cut(s)	461
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	165, 234
PspGI	CCWGG	2 cut(s)	165, 234
PspN4I	GGNNCC	2 cut(s)	12, 525
PspPI	GGNCC	3 cut(s)	10, 415, 467
PstI	CTGCAG	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	292
PvuI	CGATCG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	123, 191
RsaNI	GTAC	2 cut(s)	122, 190
SacI	GAGCTC	1 cut(s)	86
SatI	GCNGC	2 cut(s)	149, 202
Sau3AI	GATC	6 cut(s)	244, 306, 409, 454, 458, 548
Sau96I	GGNCC	3 cut(s)	10, 415, 467
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	167, 236, 370
SduI	GDGCHC	3 cut(s)	86, 242, 275
SexAI	ACCWGGT	1 cut(s)	165
SfaNI	GCATC	2 cut(s)	802, 835
SfcI	CTRYAG	3 cut(s)	199, 528, 569
Sfr274I	CTCGAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	672
SmoI	CTYRAG	1 cut(s)	672
Sse9I	AATT	4 cut(s)	193, 299, 320, 493
SsiI	CCGC	1 cut(s)	268
SspI	AATATT	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	165, 234, 368
TaaI	ACNGT	2 cut(s)	630, 649
TaiI	ACGT	2 cut(s)	123, 131
TaqI	TCGA	9 cut(s)	17, 140, 230, 338, 408, 457, 551, 644, 673
TasI	AATT	4 cut(s)	193, 299, 320, 493
TfiI	GAWTC	3 cut(s)	142, 215, 533
TseI	GCWGC	2 cut(s)	148, 201
TspDTI	ATGAA	3 cut(s)	412, 506, 570
Van91I	CCANNNNNTGG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	467
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	299, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.