pycom15g33520

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014932
Physical Location & Seq
Reverse (-)
32931367 .. 32934425
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
ATGCGTGCTGGGATATGTGACATGGTAGCAGTAGCCCGTATCATAAATGCTACTCTTGTAATTCCGGAACTTGATAAACGGTCATTTTGGAATGACTCTAGCAACTTCTCAGATGTTTTCGATGAAGATCATTTTATCAATGCTTTAGCTAATGATGTCAAAATTATAAAAAATCTTCCTAAGGAACTAGATACTGGTATAAGAGCGGTTAAGCATTTTAGAAGCTGGTCTGGTATGGATTATTACCAAGATGAGATAGCTGGCCTCTGGGAAGAATACGAGGTTATTCGAGCTGCCAAATCTGATTCTCGCTTGGCAAATAACAACCTACCTCTAGATATACAGAAGCTTCGCTGTCGTGCTTGTTATGAAGCTCTACGTTTTGCACCTCAAATTGAAGCAATGGGAAAATTGTTAGTTGATCGAATGAGGTCGTTTGGTCCTTATATTGCTCTGCATTTACGATTTGAGGAGGACATGCTTGCCTTTAGTGGATGCACACAAGATTTATCTCCAGATGAAGCTGAGGAACTAAGGATAATTCGAGAAAATACCCCATACTGGAAAGAGAAGGAAATTGATTCCACAGAACAGAGATCCAAAGGTTATTGCCCTTTAACACCAAAGGAGATTGGAATTTTTCTCACCTCTCTTGGGTACCCCTTGAACACACCTATATATCTTGCTGCTGGGAAGATATATGGCGGCGAGTCTCATATGGCTGCTCTGCGGTCCCGTTATCCAATACTGCTGAGCAAGGAAACATTGGCATCTGCCGAGGAGCTTGAACCTTTTACCAATCATGCATCTCAAATGGCTGCGCTTGACTACATTGTTTCAGTTGAAAGTGATGTATTTATACCTTCATACTCTGGAAACATGGCAAGAGCAGTCGAAGGTCATCGTCGATTTCTTGGACACAGGAAAACAATATCTCCTGACAGAAAATCCCTTGTTCGCCTGATTGACAAACTTGAGCAGGGAACTCTGAAAGAGGGCAAAAACCTATCAAATAGAGTTATTGAAATGCACAGGAAACGGCAAGGCTCCGCGCGGAAGAGAAAGGGTCCTATTTCAGGAACTAAGGGCACGGAAAGGTTTCGTTCAGAAGAACCCTTTTATGTGAACCCCTTACCAGATTGCTTGTGTAAGAAGGAATTTCCGATGCAAGCAACTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

394

Amino Acids

44.77

Weight (kDa)

7.6

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 1 - 304 1e-96 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22460
fragaria_vesca FvH4_5g36600
malus_domestica MD08G1188100.v1.1 MD15G1374100.v1.1
pyrus_communis pycom08g16150 pycom15g33520
rosa_chinensis RchiOBHm_Chr7g0242381
rosa_laevigata RLG00000000897
rosa_multiflora Rmu_sc0000429.1_g000056
rosa_roxburghii Rroxscaffold_3G00222720
rosa_rugosa Rorug07G0315100
rosa_samantha Rh7AG470600 Rh7BG440500 Rh7CG487200 Rh7DG455700
rosa_wichuraiana Rw0G009510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
Acc65I GGTACC 1 cut(s) 657
AccB1I GGYRCC 1 cut(s) 657
AccBSI CCGCTC 1 cut(s) 206
AccII CGCG 2 cut(s) 1052, 1054
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 5 cut(s) 206, 705, 730, 1050, 1054
AclWI GGATC 1 cut(s) 591
AcsI RAATTY 2 cut(s) 636, 1157
AfaI GTAC 1 cut(s) 659
AfiI CCNNNNNNNGG 3 cut(s) 561, 654, 1076
AgsI TTSAA 5 cut(s) 398, 667, 788, 845, 1025
AluBI AGCT 8 cut(s) 149, 225, 260, 293, 349, 374, 524, 784
AluI AGCT 8 cut(s) 149, 225, 260, 293, 349, 374, 524, 784
Alw26I GTCTC 1 cut(s) 717
AlwI GGATC 1 cut(s) 591
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 4 cut(s) 293, 686, 722, 818
ApoI RAATTY 2 cut(s) 636, 1157
Asp700I GAANNNNTTC 1 cut(s) 1098
Asp718I GGTACC 1 cut(s) 657
AspLEI GCGC 2 cut(s) 823, 1054
AspS9I GGNCC 3 cut(s) 440, 732, 1067
AsuHPI GGTGA 1 cut(s) 637
AvaII GGWCC 3 cut(s) 440, 732, 1067
AxyI CCTNAGG 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 1091
BanI GGYRCC 1 cut(s) 657
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 4 cut(s) 280, 673, 709, 805
BceAI ACGGC 1 cut(s) 1055
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 3 cut(s) 99, 188, 335
BisI GCNGC 5 cut(s) 294, 687, 706, 723, 819
BlpI GCTNAGC 1 cut(s) 752
BlsI GCNGC 5 cut(s) 295, 688, 707, 724, 820
Bme18I GGWCC 3 cut(s) 440, 732, 1067
BmgT120I GGNCC 3 cut(s) 440, 732, 1067
BmiI GGNNCC 4 cut(s) 659, 734, 1048, 1068
BmsI GCATC 4 cut(s) 485, 779, 815, 1155
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 995
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 777
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 3 cut(s) 561, 654, 1076
Bse1I ACTGG 2 cut(s) 199, 566
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 1 cut(s) 500
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 561, 654, 1076
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 3 cut(s) 123, 516, 743
BseNI ACTGG 2 cut(s) 199, 566
BseRI GAGGAG 2 cut(s) 485, 794
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 4 cut(s) 280, 673, 709, 805
BseYI CCCAGC 2 cut(s) 8, 689
Bsh1236I CGCG 2 cut(s) 1052, 1054
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 657
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 718
BslI CCNNNNNNNGG 3 cut(s) 561, 654, 1076
BsmAI GTCTC 1 cut(s) 717
BsmFI GGGAC 1 cut(s) 718
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 1091
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 127, 421, 596
Bsp1720I GCTNAGC 1 cut(s) 752
BspACI CCGC 5 cut(s) 206, 705, 730, 1050, 1054
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 3 cut(s) 122, 517, 744
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 2 cut(s) 1052, 1054
BspLI GGNNCC 4 cut(s) 659, 734, 1048, 1068
BspPI GGATC 1 cut(s) 591
BspT107I GGYRCC 1 cut(s) 657
BsrBI CCGCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 2 cut(s) 199, 566
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 3 cut(s) 127, 421, 596
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 1052
BstC8I GCNNGC 4 cut(s) 6, 262, 483, 1170
BstDEI CTNAG 6 cut(s) 109, 180, 525, 533, 752, 1083
BstENI CCTNNNNNAGG 1 cut(s) 1074
BstF5I GGATG 1 cut(s) 500
BstFNI CGCG 2 cut(s) 1052, 1054
BstHHI GCGC 2 cut(s) 823, 1054
BstKTI GATC 3 cut(s) 130, 424, 599
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 3 cut(s) 127, 421, 596
BstNSI RCATGY 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 1091
BstUI CGCG 2 cut(s) 1052, 1054
BstV1I GCAGC 4 cut(s) 280, 673, 709, 805
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 500
Cac8I GCNNGC 4 cut(s) 6, 262, 483, 1170
CfoI GCGC 2 cut(s) 823, 1054
Cfr13I GGNCC 3 cut(s) 440, 732, 1067
Csp6I GTAC 1 cut(s) 658
CviAII CATG 4 cut(s) 22, 478, 803, 880
CviQI GTAC 1 cut(s) 658
DdeI CTNAG 6 cut(s) 109, 180, 525, 533, 752, 1083
DpnI GATC 3 cut(s) 129, 423, 598
DpnII GATC 3 cut(s) 127, 421, 596
Eam1104I CTCTTC 1 cut(s) 1052
EarI CTCTTC 1 cut(s) 1052
Eco47I GGWCC 3 cut(s) 440, 732, 1067
Eco81I CCTNAGG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 1074
EcoO109I RGGNCCY 1 cut(s) 1067
EcoT22I ATGCAT 1 cut(s) 808
FaeI CATG 4 cut(s) 25, 481, 806, 883
FaqI GGGAC 1 cut(s) 718
FatI CATG 4 cut(s) 21, 477, 802, 879
FauNDI CATATG 1 cut(s) 717
Fnu4HI GCNGC 5 cut(s) 294, 687, 706, 723, 819
FokI GGATG 1 cut(s) 507
Fsp4HI GCNGC 5 cut(s) 294, 687, 706, 723, 819
FspBI CTAG 3 cut(s) 99, 188, 335
GlaI GCGC 2 cut(s) 822, 1053
GluI GCNGC 5 cut(s) 294, 687, 706, 723, 819
GsaI CCCAGC 2 cut(s) 12, 693
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 65
HhaI GCGC 2 cut(s) 823, 1054
Hin1II CATG 4 cut(s) 25, 481, 806, 883
Hin6I GCGC 2 cut(s) 821, 1052
HinP1I GCGC 2 cut(s) 821, 1052
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 95, 305, 581, 710
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 1126
Hpy188I TCNGA 5 cut(s) 112, 304, 990, 1108, 1164
Hpy188III TCNNGA 7 cut(s) 65, 335, 515, 545, 873, 938, 1077
Hpy8I GTNNAC 1 cut(s) 1126
Hpy99I CGWCG 1 cut(s) 909
HpyAV CCTTC 4 cut(s) 565, 873, 890, 1147
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 6 cut(s) 386, 457, 498, 806, 1030, 1168
HpyF3I CTNAG 6 cut(s) 109, 180, 525, 533, 752, 1083
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 4 cut(s) 25, 481, 806, 883
HspAI GCGC 2 cut(s) 821, 1052
Kpn2I TCCGGA 1 cut(s) 64
KpnI GGTACC 1 cut(s) 661
Kzo9I GATC 3 cut(s) 127, 421, 596
LmnI GCTCC 2 cut(s) 781, 1052
Lsp1109I GCAGC 4 cut(s) 280, 673, 709, 805
LweI GCATC 4 cut(s) 485, 779, 815, 1155
MaeI CTAG 3 cut(s) 99, 188, 335
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 129, 423, 598
MbiI CCGCTC 1 cut(s) 206
MboI GATC 3 cut(s) 127, 421, 596
MboII GAAGA 6 cut(s) 137, 167, 284, 706, 1069, 1121
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 1 cut(s) 1091
MluCI AATT 8 cut(s) 60, 162, 393, 410, 540, 576, 636, 1157
MlyI GAGTC 2 cut(s) 89, 719
Mph1103I ATGCAT 1 cut(s) 808
MroI TCCGGA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 1098
MseI TTAA 2 cut(s) 210, 617
MspI CCGG 1 cut(s) 65
MvnI CGCG 2 cut(s) 1052, 1054
NdeI CATATG 1 cut(s) 717
NdeII GATC 3 cut(s) 127, 421, 596
NlaIII CATG 4 cut(s) 25, 481, 806, 883
NlaIV GGNNCC 4 cut(s) 659, 734, 1048, 1068
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 1098
PfeI GAWTC 2 cut(s) 305, 581
PkrI GCNGC 5 cut(s) 295, 688, 707, 724, 820
PleI GAGTC 2 cut(s) 89, 718
PpsI GAGTC 2 cut(s) 89, 718
PpuMI RGGWCCY 1 cut(s) 1067
PsiI TTATAA 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 1067
PspFI CCCAGC 2 cut(s) 8, 689
PspN4I GGNNCC 4 cut(s) 659, 734, 1048, 1068
PspPI GGNCC 3 cut(s) 440, 732, 1067
PspPPI RGGWCCY 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 596
RsaI GTAC 1 cut(s) 659
RsaNI GTAC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 210, 617
SatI GCNGC 5 cut(s) 294, 687, 706, 723, 819
Sau3AI GATC 3 cut(s) 127, 421, 596
Sau96I GGNCC 3 cut(s) 440, 732, 1067
SchI GAGTC 2 cut(s) 89, 719
SduI GDGCHC 1 cut(s) 1091
SfaNI GCATC 4 cut(s) 485, 779, 815, 1155
SinI GGWCC 3 cut(s) 440, 732, 1067
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
Sse9I AATT 8 cut(s) 60, 162, 393, 410, 540, 576, 636, 1157
SsiI CCGC 5 cut(s) 206, 705, 730, 1050, 1054
SspMI CTAG 3 cut(s) 99, 188, 335
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 382
TaqI TCGA 6 cut(s) 120, 289, 424, 544, 894, 907
TasI AATT 8 cut(s) 60, 162, 393, 410, 540, 576, 636, 1157
TauI GCSGC 1 cut(s) 708
TfiI GAWTC 2 cut(s) 305, 581
Tru1I TTAA 2 cut(s) 210, 617
Tru9I TTAA 2 cut(s) 210, 617
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 4 cut(s) 293, 686, 722, 818
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 4 cut(s) 138, 384, 534, 855
TspGWI ACGGA 1 cut(s) 1106
VpaK11BI GGWCC 3 cut(s) 440, 732, 1067
XagI CCTNNNNNAGG 1 cut(s) 1074
XapI RAATTY 2 cut(s) 636, 1157
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 481
XmnI GAANNNNTTC 1 cut(s) 1098
XspI CTAG 3 cut(s) 99, 188, 335
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.