Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011774

Physical Location & Seq

Genomic Coordinates Forward (+)

35421336 .. 35422680

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGTTGATAAGAACATAGTAGGCGATGGAGGATCAGGGACAGTGTACAAGATTGAGCTGAGCAGCGGGGATGTGATTGCAGTGAAGAGGCTGTGGAGTAGAAAAGCAAAAGATTCTGCGGAAGATCAGCTGTTCATACACAAGGAGTTGAAAACTGAGGTTGAGACGCTGGGAAGTATAAGGCACAAAAACATTGTCAAATTGTACTGCTACTTCTCAAGCTCGGACTGCAACCTTTTGGTTTATGAGTATATGCCAAATGGTAACCTTTGGGATGCTCTTCACAAAGGTTGGATCCATCTAGATTGGCCTACTCGTCACCAGATTGCCCTCGGGATTGCGCAGGGTTTGGCATACCTCCACCATGATCTGTTGCTTCCAATTATTCACAGAGATATCAAGTCTACCAACATCCTGCTTGATGTCAATAACCAACCCAAGGTTGCAGATTTTGGCATAGCCAAGGTTTTACAAGCAAGAGCAGGAAAAGATTCCACCACCACTGTTATTGCTGGGACTTATGGTTACTTAGCCCCAGAATATGCATATTCATCCAAAGCAACAACTAAGTGTGACGTCTACAGTTTTGGGGTAGTTTTGATGGAGTTGATAACAGGGAAGAAGCCAGTGGAGGCAGAGTTTGGAGACAACAAGAACATCATATATTGGGTTTCAAACAAAGTGGACACCAAAGAAGGAGCTACGGAAGTGCTGGACAAGCGATTATCGGACTCATTCAAGGAGGAGATGATCCAGGTTCTTCGCATTGCCGTTCGATGCACCTACAAGGCGCCTTCGCTGCGCCCGAGCATGAAGGAGGTCGTTCAGCTGCTGATTGAAGCTGACCCTTGCAGATTTGATTCATGCAAGTCATCAACTAAGACCAAAGAAGCACCAAATGTGACAAAGGTCAAGAACCCTTATGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003002 GO:0003674 GO:0005488 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009962 GO:0009987 GO:0009991 GO:0010015 GO:0010051 GO:0010101 GO:0010102 GO:0010311 GO:0015698 GO:0015706 GO:0017046 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031540 GO:0031667 GO:0032501 GO:0032502 GO:0033218 GO:0038023 GO:0042277 GO:0042562 GO:0042594 GO:0043455 GO:0044087 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0060089 GO:0065007 GO:0071705 GO:0080090 GO:0090548 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1900376 GO:1901141 GO:1901333 GO:1902025 GO:1903338 GO:1905392 GO:1905393 GO:2000023 GO:2000026 GO:2000069 GO:2000280 GO:2000652 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

311

Amino Acids

34.78

Weight (kDa)

8.35

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49660
fragaria_vesca	FvH4_5g33580 FvH4_5g33580
malus_domestica	MD08G1210400.v1.1 MD12G1134800.v1.1 MD15G1394300.v1.1
prunus_persica	Prupe.1G542400_v2.0.a1
pyrus_communis	pycom08g18140 pycom15g35440 pycom15g35450
rosa_chinensis	RchiOBHm_Chr7g0232421
rosa_laevigata	RLG00000001343
rosa_multiflora	Rmu_sc0003113.1_g000026
rosa_roxburghii	Rroxscaffold_3G00228340
rosa_samantha	Rh7AG427300 Rh7BG402200 Rh7CG446800 Rh7DG418800
rosa_wichuraiana	Rw7G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	579
Acc16I	TGCGCA	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	790
AccI	GTMKAC	2 cut(s)	404, 579
AciI	CCGC	2 cut(s)	66, 119
AclWI	GGATC	4 cut(s)	40, 289, 302, 745
AcyI	GRCGYC	2 cut(s)	576, 791
AfaI	GTAC	2 cut(s)	47, 206
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	151, 675, 739, 839
AjnI	CCWGG	1 cut(s)	753
AluBI	AGCT	6 cut(s)	58, 130, 222, 701, 829, 842
AluI	AGCT	6 cut(s)	58, 130, 222, 701, 829, 842
Alw26I	GTCTC	2 cut(s)	158, 639
AlwI	GGATC	4 cut(s)	40, 289, 302, 745
AlwNI	CAGNNNCTG	1 cut(s)	832
Ama87I	CYCGRG	2 cut(s)	332, 805
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	63, 799, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	3 cut(s)	343, 793, 804
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	2 cut(s)	332, 805
BamHI	GGATCC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	790
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
BbvI	GCAGC	3 cut(s)	75, 786, 816
BccI	CCATC	3 cut(s)	20, 306, 595
BceAI	ACGGC	1 cut(s)	755
BciT130I	CCWGG	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	158, 639
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	580
BfoI	RGCGCY	1 cut(s)	794
BisI	GCNGC	3 cut(s)	64, 800, 830
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	65, 801, 831
Bme1390I	CCNGG	1 cut(s)	755
BmeT110I	CYCGRG	2 cut(s)	332, 805
BmiI	GGNNCC	2 cut(s)	296, 792
BmrFI	CCNGG	1 cut(s)	755
BmsI	GCATC	2 cut(s)	265, 767
BoxI	GACNNNNGTC	1 cut(s)	908
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	576, 791
BsaJI	CCNNGG	3 cut(s)	331, 438, 462
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	626
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	3 cut(s)	331, 438, 462
BseGI	GGATG	4 cut(s)	76, 280, 411, 551
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	50, 147
BseNI	ACTGG	1 cut(s)	626
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	3 cut(s)	75, 786, 816
BseYI	CCCAGC	2 cut(s)	169, 512
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	790
BsiHKCI	CYCGRG	2 cut(s)	332, 805
BslFI	GGGAC	2 cut(s)	52, 529
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	158, 639
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	52, 529
BsnI	GGCC	1 cut(s)	310
BsoBI	CYCGRG	2 cut(s)	332, 805
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	32, 124, 294, 367, 750
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	2 cut(s)	66, 119
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	51, 148
BspLI	GGNNCC	2 cut(s)	296, 792
BspPI	GGATC	4 cut(s)	40, 289, 302, 745
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	765
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	3 cut(s)	331, 438, 462
BssMI	GATC	5 cut(s)	32, 124, 294, 367, 750
BssNI	GRCGYC	2 cut(s)	576, 791
BssT1I	CCWWGG	2 cut(s)	438, 462
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	3 cut(s)	43, 505, 584
Bst6I	CTCTTC	2 cut(s)	80, 285
BstACI	GRCGYC	2 cut(s)	576, 791
BstAUI	TGTACA	1 cut(s)	45
BstDEI	CTNAG	5 cut(s)	59, 156, 529, 567, 879
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	4 cut(s)	76, 280, 411, 551
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	3 cut(s)	343, 793, 804
BstKTI	GATC	5 cut(s)	35, 127, 297, 370, 753
BstMAI	GTCTC	2 cut(s)	158, 639
BstMBI	GATC	5 cut(s)	32, 124, 294, 367, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 718, 799
BstNI	CCWGG	1 cut(s)	755
BstPAI	GACNNNNGTC	1 cut(s)	908
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	753
BstSFI	CTRYAG	1 cut(s)	580
BstV1I	GCAGC	3 cut(s)	75, 786, 816
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	76, 280, 411, 551
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	4 cut(s)	48, 87, 501, 633
CaiI	CAGNNNCTG	1 cut(s)	832
CfoI	GCGC	3 cut(s)	343, 793, 804
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	46, 205
CspCI	CAANNNNNGTGG	4 cut(s)	490, 525, 663, 698
CviAII	CATG	3 cut(s)	365, 811, 864
CviQI	GTAC	2 cut(s)	46, 205
DdeI	CTNAG	5 cut(s)	59, 156, 529, 567, 879
DinI	GGCGCC	1 cut(s)	792
DpnI	GATC	5 cut(s)	34, 126, 296, 369, 752
DpnII	GATC	5 cut(s)	32, 124, 294, 367, 750
Eam1104I	CTCTTC	2 cut(s)	80, 285
EarI	CTCTTC	2 cut(s)	80, 285
Eco130I	CCWWGG	2 cut(s)	438, 462
Eco32I	GATATC	1 cut(s)	397
Eco88I	CYCGRG	2 cut(s)	332, 805
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	753
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	2 cut(s)	438, 462
EcoT22I	ATGCAT	1 cut(s)	547
EgeI	GGCGCC	1 cut(s)	792
EheI	GGCGCC	1 cut(s)	792
ErhI	CCWWGG	2 cut(s)	438, 462
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	368, 814, 867
FaqI	GGGAC	2 cut(s)	52, 529
FatI	CATG	3 cut(s)	364, 810, 863
FauI	CCCGC	1 cut(s)	59
FblI	GTMKAC	2 cut(s)	404, 579
Fnu4HI	GCNGC	3 cut(s)	64, 800, 830
FokI	GGATG	4 cut(s)	83, 287, 398, 538
Fsp4HI	GCNGC	3 cut(s)	64, 800, 830
FspBI	CTAG	1 cut(s)	302
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	3 cut(s)	342, 792, 803
GluI	GCNGC	3 cut(s)	64, 800, 830
GsaI	CCCAGC	2 cut(s)	173, 516
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	1 cut(s)	310
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	343, 793, 804
Hin1I	GRCGYC	2 cut(s)	576, 791
Hin1II	CATG	3 cut(s)	368, 814, 867
Hin6I	GCGC	3 cut(s)	341, 791, 802
HinP1I	GCGC	3 cut(s)	341, 791, 802
HinfI	GANTC	4 cut(s)	113, 491, 731, 860
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	4 cut(s)	46, 405, 580, 685
Hpy188I	TCNGA	2 cut(s)	226, 730
Hpy188III	TCNNGA	3 cut(s)	302, 334, 913
Hpy8I	GTNNAC	4 cut(s)	46, 405, 580, 685
HpyAV	CCTTC	3 cut(s)	689, 804, 808
HpyCH4III	ACNGT	3 cut(s)	43, 505, 584
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	7 cut(s)	80, 231, 446, 545, 780, 852, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 718, 799
HpyF3I	CTNAG	5 cut(s)	59, 156, 529, 567, 879
HpySE526I	ACGT	1 cut(s)	576
Hsp92I	GRCGYC	2 cut(s)	576, 791
Hsp92II	CATG	3 cut(s)	368, 814, 867
HspAI	GCGC	3 cut(s)	341, 791, 802
KasI	GGCGCC	1 cut(s)	790
Kzo9I	GATC	5 cut(s)	32, 124, 294, 367, 750
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	698
Lsp1109I	GCAGC	3 cut(s)	75, 786, 816
LweI	GCATC	2 cut(s)	265, 767
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	5 cut(s)	263, 317, 524, 572, 901
MalI	GATC	5 cut(s)	34, 126, 296, 369, 752
MboI	GATC	5 cut(s)	32, 124, 294, 367, 750
MboII	GAAGA	5 cut(s)	97, 134, 272, 631, 752
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	2 cut(s)	200, 381
Mly113I	GGCGCC	1 cut(s)	791
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	8 cut(s)	23, 81, 151, 341, 368, 625, 736, 811
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	490
MspA1I	CMGCKG	3 cut(s)	66, 130, 829
MspR9I	CCNGG	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	755
MwoI	GCNNNNNNNGC	3 cut(s)	228, 718, 799
NarI	GGCGCC	1 cut(s)	791
NdeII	GATC	5 cut(s)	32, 124, 294, 367, 750
NlaIII	CATG	3 cut(s)	368, 814, 867
NlaIV	GGNNCC	2 cut(s)	296, 792
NmuCI	GTSAC	3 cut(s)	317, 572, 901
NsbI	TGCGCA	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	113, 491, 860
PkrI	GCNGC	3 cut(s)	65, 801, 831
PleI	GAGTC	1 cut(s)	725
PluTI	GGCGCC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	725
PshAI	GACNNNNGTC	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	753
PspEI	GGTNACC	1 cut(s)	263
PspFI	CCCAGC	2 cut(s)	169, 512
PspGI	CCWGG	1 cut(s)	753
PspN4I	GGNNCC	2 cut(s)	296, 792
PstNI	CAGNNNCTG	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	2 cut(s)	130, 829
RsaI	GTAC	2 cut(s)	47, 206
RsaNI	GTAC	2 cut(s)	46, 205
SapI	GCTCTTC	1 cut(s)	285
SatI	GCNGC	3 cut(s)	64, 800, 830
Sau3AI	GATC	5 cut(s)	32, 124, 294, 367, 750
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	1 cut(s)	755
SfaNI	GCATC	2 cut(s)	265, 767
SfcI	CTRYAG	1 cut(s)	580
SfoI	GGCGCC	1 cut(s)	792
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	200, 381
SsiI	CCGC	2 cut(s)	66, 119
SspDI	GGCGCC	1 cut(s)	790
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	753
StyI	CCWWGG	2 cut(s)	438, 462
TaaI	ACNGT	3 cut(s)	43, 505, 584
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	1 cut(s)	775
TasI	AATT	2 cut(s)	200, 381
TatI	WGTACW	2 cut(s)	45, 204
TfiI	GAWTC	3 cut(s)	113, 491, 860
TscAI	CASTG	4 cut(s)	48, 87, 508, 633
TseFI	GTSAC	3 cut(s)	317, 572, 901
TseI	GCWGC	3 cut(s)	63, 799, 829
Tsp45I	GTSAC	3 cut(s)	317, 572, 901
TspDTI	ATGAA	4 cut(s)	124, 540, 827, 852
TspGWI	ACGGA	1 cut(s)	719
TspRI	CASTG	4 cut(s)	48, 87, 508, 633
XbaI	TCTAGA	1 cut(s)	301
XmiI	GTMKAC	2 cut(s)	404, 579
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	1 cut(s)	302
ZraI	GACGTC	1 cut(s)	577
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.