Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0011774

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG446800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGCAAAGATATGCCACCTCTCTCTCTATCTCTCTCTTATCTCTCTGTATTCTGTACTACTACTGCACGAACCCTCCTTTTTTATCATCATCATCATCAAGGCTTATTACTGCTGAACCCAAACATCCCCACAATCAACACATTTATATACATCTTCTCTTCCTCACCTCCTTCCCTGCAACAAGTACCAGCTTTAAAACTTTACCCTTTTTAATTCCTTCTCCCTTTTCTCTCCTTCCATCTTTCAGCTTTTCAAACATGGCCTCTCACATAACCTACTTCCTTTCTGTGTTACTTATAATATTCTTGGTTTTGTATCCTTCTCAAGCCTTGATCACTAGTAGTAACCAGTCTCAGTTTTTTGTGCAAATAATAAAGTCTCTTTCACCTAATTCGGGCAGCTCTTTGTCAGATTGGGATGTCAAAGGAGGAAAACCTTACTGTAACTTCTCTGGGGCTAGCTGCAATGATGATGGCTACGTTGTCCGGATTGATATTTCCGGTCGATCACTCTCGGGTCACTTTCCAGTAGACATATGCTCCTACCTGCCTCAGTTGCGCATTCTCCGTCTTGGTCACAACAACCTCCAGGGTGACTTTGTTGATAGCATCACCAACTGCTCATTCTTGGAAGAGCTCAGCATGGATCATTTGTATCTCAGTGGAACTCTACCAGATTTTTCACCCTTGAAGAATCTAAAGATACTTGACTTGTCTTACAACAAGTTCAAAGGCAAGTTCCCCATGTCAGTGTTTAATCTTACCAATCTTGAGGTGCTCAATTTCAATGAGAATGGAAATTTCAACTTATGGCAGCTGCCGGAGAATATACACACTCTGACAAAGCTCAAATCCATGATCTTGACAACATGCATGGTACAAGGGAAGATCCCAACATCAATAGGAAACATGACTTCCCTCGTTGATCTTGAACTGAGTGGAAATTACCTGGTGGGTCAAATTCCAGCAGAGATTGGATTGCTCAAGAATTTGAAGCAATTGGAGCTGTACTACAACCAACTCACTGGTAACATACCTGAGGAGCTCGGAAATCTCACAGACCTCACTGATATGGACATGTCAGTCAATAAGTTGACTGGGAAGATTCCAGAGTCAATCTGTCGGCTTCCCCGGCTTCAAGTCCTGCAGCTTTACAACAACAGCCTTTCAGGAGAGATCCCAACTGTGATTGCAGACTCAAAAACACTGAGCATGCTGTCACTTTATGACAATTCCCTGACTGGAGAAGTTCCAAGAAATCTGGGGAAATCATCAGCTATAGTTGTCCTTGACTTGTCAGAGAACCAACTTTCTGGTCCATTACCAACAGAGGTTTGCAGGGGAGGTAAGTTGCTCTACTTTCTTATTCTGGAAAACCAGTTTTCTGGAGAAATACCAGACAGCTATGCAGGATGTGAGTCTCTTCTTCGATTTCGGCTTAGCTTTAATCGTTTGGAGGGCTCGATACCTGCAGGACTTCTTAATCTTCCCCATGTTTCCATCTTTGATCTGGCTTACAACAATCTGAGTGGTCAGATTGCTGATAAAATTGGGAGAGCCAGAAATTTGTCTGAACTTTTTATCCAAAACAACAGCATTTCAGGTGTTCTACCCCCTGGAATCTCTGGAGCAATAAGTCTAGTGAAGATTGATCTCAGTAATAATCTTATTTCTGGTCCAATTCCTTCAGAAATTGGAAAATTAAAGAAGCTGAATTTACTGATGTTGCAGGGCAACAAGCTCACTTCTTCCATTCCTGATTCACTTTCTTTGTTGAAATCACTCAATGTTCTTGATCTCTCCAACAACCTCTTGACAGGAAATATCCCTGATAGTCTTTGTGAATTGTTACCAAACTCTATCAACTTCTCAAACAATAAGCTGTCAGGTCCTATTCCAGTCCATTTGATAGAAGGAGGGCTAATAGAAAGCTTTTCTGGCAACCCTGGCCTTTGTGTGAAAGTCTATGTTAACTCATCTGATCAAAATAGGTTTCCCGTATGCCCACAACACTTCAACAGAAAGAAAATAAATTCCTTTTGGGTAGTAACAGTTTCAGTAGTTATTATTCTTATTGGAGCTATTCTCTTTCTGAAGCGCCGATTTGGAAAAAAAAGAGCAGAAGTGGAACATGATGAATCTCGATCCTCATCATTCTTCTGCTATGATGTGAAAAGTTTTCATCGAATAAGTTTTGACCATCGTGAGGTCATTGAAGCTATGGTTGACAAGAACATAGTAGGCAATGGAGGATCTGGGACAGTTTACAAGATCGAGTTGAGCAGTGGGGACGTAGTTGCGGTGAAGAGACTATGGAGTAAGAAAACAAAAGAATCTTCAGAAGATGATCAGTTTGTTATACACAAGGAGTTGAAAACTGAGGTGGAGACTCTGGGTAACATAAGGCATAAGAACATTGTAAAATTGTTTTGCTACTTCTCAAGTTTGGATTGCAACCTGTTGGTTTATGAGTATATGCCAAACGGAAACCTTTGGGATGCTCTTCACAAAGGTTGGATCCATTTGGAGTGGCCTACTCGTCACCAGATCGCGCTAGGGATTGCACAGGGCTTGTCATATCTCCACCATGATCTGATGCCTCCAATTATTCACAGAGATATTAAGTCCACCAACATATTGCTTGATGTGAATTACCAACCCAAAGTTGCAGATTTTGGCATAGCAAAGGTTTTACAAGCAAGAGGAGGGAAAGATTCCACAACCACTGTTATCGCTGGGACATACGGTTACTTAGCCCCAGAATATGCATATTCATCCAAAGCTACAACCAAGTGCGATGTCTACAGTTTTGGGGTAGTTCTAATGGAACTGATAACTGGGAAGAAGCCGGTGGAGGCAGAGTTTGGTGACAACAAGAACATCATATACTGGGTTTCAAATAAAGTGGATACTAAAGAAGGAGCCATGGAGGTTTTAGACAAGCGATTGTCAGAGTCATTCAAGGAGGAAATGATCCAAGTTCTTCGAATTGCCGTTCGATGTACCTACAAGGCCCCTTCTCTGCGTCCAACCATGAAGGAAGTGGTTCAGTTGCTGATCGAGGCAGACCCTTGCAGATTTGATTCATGCAAGTCATCAATCAAGACCAAAGAAGCATCAAATGTAACAAAGGTTAAGAACCCTTTTGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003002 GO:0003674 GO:0005488 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009653 GO:0009791 GO:0009889 GO:0009962 GO:0009987 GO:0009991 GO:0010015 GO:0010051 GO:0010101 GO:0010102 GO:0010311 GO:0015698 GO:0015706 GO:0017046 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031540 GO:0031667 GO:0032501 GO:0032502 GO:0033218 GO:0038023 GO:0042277 GO:0042562 GO:0042594 GO:0043455 GO:0044087 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048580 GO:0048582 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0060089 GO:0065007 GO:0071705 GO:0080090 GO:0090548 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1900376 GO:1901141 GO:1901333 GO:1902025 GO:1903338 GO:1905392 GO:1905393 GO:2000023 GO:2000026 GO:2000069 GO:2000280 GO:2000652 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1051

Amino Acids

116.92

Weight (kDa)

7.74

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	222 - 339	6.1e-11	Leucine-rich repeat region
LRR_14	PF23598	324 - 534	3.5e-08	Leucine-rich repeat region
Pkinase	PF00069	744 - 1017	7.6e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	745 - 1018	1.1e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011774)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49660
fragaria_vesca	FvH4_5g33580 FvH4_5g33580
malus_domestica	MD08G1210400.v1.1 MD12G1134800.v1.1 MD15G1394300.v1.1
prunus_persica	Prupe.1G542400_v2.0.a1
pyrus_communis	pycom08g18140 pycom15g35440 pycom15g35450
rosa_chinensis	RchiOBHm_Chr7g0232421
rosa_laevigata	RLG00000001343
rosa_multiflora	Rmu_sc0003113.1_g000026
rosa_roxburghii	Rroxscaffold_3G00228340
rosa_samantha	Rh7AG427300 Rh7BG402200 Rh7CG446800 Rh7DG418800
rosa_wichuraiana	Rw7G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AasI	GACNNNNNNGTC	1 cut(s)	1082
Acc16I	TGCGCA	1 cut(s)	560
Acc36I	ACCTGC	2 cut(s)	555, 1477
AccI	GTMKAC	2 cut(s)	531, 2802
AccII	CGCG	1 cut(s)	2552
AccIII	TCCGGA	1 cut(s)	486
AciI	CCGC	1 cut(s)	2300
AclWI	GGATC	8 cut(s)	654, 883, 1171, 2139, 2260, 2512, 2525, 2968
AcsI	RAATTY	6 cut(s)	799, 960, 988, 1564, 1714, 2032
AcuI	CTGAAG	3 cut(s)	1671, 2114, 2322
AfaI	GTAC	5 cut(s)	56, 187, 879, 1010, 3004
AfiI	CCNNNNNNNGG	2 cut(s)	395, 2206
AflIII	ACRYGT	1 cut(s)	1077
AhlI	ACTAGT	1 cut(s)	338
AjnI	CCWGG	4 cut(s)	588, 948, 1615, 1945
AjuI	GAANNNNNNNTTGG	2 cut(s)	608, 640
AloI	GAACNNNNNNTCC	2 cut(s)	1566, 1598
Alw21I	GWGCWC	3 cut(s)	639, 780, 1047
Alw26I	GTCTC	5 cut(s)	357, 384, 1425, 2302, 2381
AlwI	GGATC	8 cut(s)	654, 883, 1171, 2139, 2260, 2512, 2525, 2968
AlwNI	CAGNNNCTG	1 cut(s)	3055
Ama87I	CYCGRG	1 cut(s)	514
Aor13HI	TCCGGA	1 cut(s)	486
AoxI	GGCC	4 cut(s)	261, 1948, 2531, 3012
ApeKI	GCWGC	5 cut(s)	399, 462, 814, 817, 1147
ApoI	RAATTY	6 cut(s)	799, 960, 988, 1564, 1714, 2032
Asp700I	GAANNNNTTC	1 cut(s)	3045
AspLEI	GCGC	3 cut(s)	561, 2100, 2554
AspS9I	GGNCC	4 cut(s)	1316, 1676, 1889, 3013
AsuC2I	CCSGG	1 cut(s)	1132
AsuHPI	GGTGA	8 cut(s)	157, 378, 604, 605, 675, 2314, 2534, 2879
AsuII	TTCGAA	1 cut(s)	2986
AsuNHI	GCTAGC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	514
AvaII	GGWCC	3 cut(s)	1316, 1676, 1889
AxyI	CCTNAGG	1 cut(s)	1038
BamHI	GGATCC	1 cut(s)	2517
BanII	GRGCYC	3 cut(s)	639, 1047, 1463
Bbv12I	GWGCWC	3 cut(s)	639, 780, 1047
BbvI	GCAGC	5 cut(s)	411, 449, 804, 826, 1159
BccI	CCATC	4 cut(s)	247, 467, 1508, 2208
BceAI	ACGGC	1 cut(s)	2978
BciT130I	CCWGG	4 cut(s)	590, 950, 1617, 1947
BciVI	GTATCC	2 cut(s)	327, 2902
BclI	TGATCA	3 cut(s)	333, 1981, 2347
BcnI	CCSGG	1 cut(s)	1132
BcoDI	GTCTC	5 cut(s)	357, 384, 1425, 2302, 2381
BcuI	ACTAGT	1 cut(s)	338
BfaI	CTAG	4 cut(s)	339, 459, 1640, 2555
BfmI	CTRYAG	4 cut(s)	1145, 1278, 1470, 2803
BfoI	RGCGCY	1 cut(s)	2101
BfuAI	ACCTGC	2 cut(s)	555, 1477
BfuI	GTATCC	2 cut(s)	327, 2902
BisI	GCNGC	5 cut(s)	400, 463, 815, 818, 1148
BlpI	GCTNAGC	2 cut(s)	638, 1439
BlsI	GCNGC	5 cut(s)	401, 464, 816, 819, 1149
Bme1390I	CCNGG	5 cut(s)	590, 950, 1132, 1617, 1947
Bme18I	GGWCC	3 cut(s)	1316, 1676, 1889
BmeT110I	CYCGRG	1 cut(s)	514
BmgT120I	GGNCC	4 cut(s)	1316, 1676, 1889, 3013
BmiI	GGNNCC	3 cut(s)	2519, 2923, 3015
BmrFI	CCNGG	5 cut(s)	590, 950, 1132, 1617, 1947
BmrI	ACTGGG	3 cut(s)	1107, 2847, 2899
BmsI	GCATC	4 cut(s)	618, 2488, 2586, 3125
BmtI	GCTAGC	1 cut(s)	462
BmuI	ACTGGG	3 cut(s)	1107, 2847, 2899
BplI	GAGNNNNNCTC	2 cut(s)	2070, 2102
BpmI	CTGGAG	4 cut(s)	572, 1263, 1407, 1647
Bpu1102I	GCTNAGC	2 cut(s)	638, 1439
Bpu14I	TTCGAA	1 cut(s)	2986
BpuEI	CTTGAG	4 cut(s)	309, 791, 968, 2425
BpuMI	CCSGG	1 cut(s)	1132
BsaBI	GATNNNNATC	1 cut(s)	2149
BsaJI	CCNNGG	5 cut(s)	589, 1130, 1615, 1945, 2925
BsaWI	WCCGGW	2 cut(s)	486, 500
BsaXI	ACNNNNNCTCC	6 cut(s)	58, 88, 524, 554, 2846, 2876
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 2206
Bse118I	RCCGGY	1 cut(s)	2848
Bse1I	ACTGG	9 cut(s)	349, 527, 1030, 1102, 1246, 1378, 1898, 2842, 2894
Bse21I	CCTNAGG	1 cut(s)	1038
Bse3DI	GCAATG	2 cut(s)	472, 2251
Bse8I	GATNNNNATC	1 cut(s)	2149
BseAI	TCCGGA	1 cut(s)	486
BseBI	CCWGG	4 cut(s)	590, 950, 1617, 1947
BseDI	CCNNGG	5 cut(s)	589, 1130, 1615, 1945, 2925
BseGI	GGATG	5 cut(s)	124, 424, 1418, 2503, 2774
BseJI	GATNNNNATC	1 cut(s)	2149
BseLI	CCNNNNNNNGG	2 cut(s)	395, 2206
BseMI	GCAATG	2 cut(s)	472, 2251
BseNI	ACTGG	9 cut(s)	349, 527, 1030, 1102, 1246, 1378, 1898, 2842, 2894
BseRI	GAGGAG	2 cut(s)	1055, 2718
BseXI	GCAGC	5 cut(s)	411, 449, 804, 826, 1159
BseYI	CCCAGC	1 cut(s)	2735
BsgI	GTGCAG	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	2552
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	4 cut(s)	263, 1950, 2533, 3014
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	3 cut(s)	639, 780, 1047
BsiHKCI	CYCGRG	1 cut(s)	514
BsiSI	CCGG	5 cut(s)	487, 501, 821, 1132, 2849
BslFI	GGGAC	3 cut(s)	2272, 2303, 2752
BslI	CCNNNNNNNGG	2 cut(s)	395, 2206
BsmAI	GTCTC	5 cut(s)	357, 384, 1425, 2302, 2381
BsmFI	GGGAC	3 cut(s)	2272, 2303, 2752
BsmI	GAATGC	1 cut(s)	561
BsnI	GGCC	4 cut(s)	263, 1950, 2533, 3014
BsoBI	CYCGRG	1 cut(s)	514
Bsp119I	TTCGAA	1 cut(s)	2986
Bsp1286I	GDGCHC	4 cut(s)	639, 780, 1047, 1463
Bsp13I	TCCGGA	1 cut(s)	486
Bsp1720I	GCTNAGC	2 cut(s)	638, 1439
Bsp19I	CCATGG	1 cut(s)	2925
BspACI	CCGC	1 cut(s)	2300
BspANI	GGCC	4 cut(s)	263, 1950, 2533, 3014
BspEI	TCCGGA	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	2552
BspLI	GGNNCC	3 cut(s)	2519, 2923, 3015
BspMAI	CTGCAG	2 cut(s)	1149, 1474
BspMI	ACCTGC	2 cut(s)	555, 1477
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	8 cut(s)	654, 883, 1171, 2139, 2260, 2512, 2525, 2968
BspQI	GCTCTTC	2 cut(s)	627, 2508
BspT104I	TTCGAA	1 cut(s)	2986
BsrDI	GCAATG	2 cut(s)	472, 2251
BsrFI	RCCGGY	1 cut(s)	2848
BsrI	ACTGG	9 cut(s)	349, 527, 1030, 1102, 1246, 1378, 1898, 2842, 2894
BssAI	RCCGGY	1 cut(s)	2848
BssECI	CCNNGG	5 cut(s)	589, 1130, 1615, 1945, 2925
BssT1I	CCWWGG	1 cut(s)	2925
Bst2UI	CCWGG	4 cut(s)	590, 950, 1617, 1947
Bst4CI	ACNGT	7 cut(s)	443, 1186, 2053, 2263, 2728, 2747, 2807
Bst6I	CTCTTC	5 cut(s)	164, 627, 1428, 2300, 2508
BstBI	TTCGAA	1 cut(s)	2986
BstC8I	GCNNGC	2 cut(s)	460, 1214
BstDSI	CCRYGG	1 cut(s)	2925
BstF5I	GGATG	5 cut(s)	124, 424, 1418, 2503, 2774
BstFNI	CGCG	1 cut(s)	2552
BstH2I	RGCGCY	1 cut(s)	2101
BstHHI	GCGC	3 cut(s)	561, 2100, 2554
BstMAI	GTCTC	5 cut(s)	357, 384, 1425, 2302, 2381
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	5 cut(s)	556, 1003, 1132, 1938, 1947
BstNI	CCWGG	4 cut(s)	590, 950, 1617, 1947
BstNSI	RCATGY	3 cut(s)	873, 1081, 1216
BstSCI	CCNGG	5 cut(s)	588, 948, 1130, 1615, 1945
BstSFI	CTRYAG	4 cut(s)	1145, 1278, 1470, 2803
BstUI	CGCG	1 cut(s)	2552
BstV1I	GCAGC	5 cut(s)	411, 449, 804, 826, 1159
BstX2I	RGATCY	4 cut(s)	888, 1176, 2252, 2517
BstXI	CCANNNNNNTGG	3 cut(s)	1025, 1313, 1385
BstYI	RGATCY	4 cut(s)	888, 1176, 2252, 2517
Bsu36I	CCTNAGG	1 cut(s)	1038
BsuI	GTATCC	2 cut(s)	327, 2902
BsuRI	GGCC	4 cut(s)	263, 1950, 2533, 3014
BtgI	CCRYGG	1 cut(s)	2925
BtgZI	GCGATG	1 cut(s)	2811
BtsCI	GGATG	5 cut(s)	124, 424, 1418, 2503, 2774
BtsI	GCAGTG	1 cut(s)	2290
BtsIMutI	CAGTG	7 cut(s)	667, 756, 1023, 1065, 1205, 2290, 2724
BveI	ACCTGC	2 cut(s)	555, 1477
Cac8I	GCNNGC	2 cut(s)	460, 1214
CaiI	CAGNNNCTG	1 cut(s)	3055
CfoI	GCGC	3 cut(s)	561, 2100, 2554
Cfr10I	RCCGGY	1 cut(s)	2848
Cfr13I	GGNCC	4 cut(s)	1316, 1676, 1889, 3013
CseI	GACGC	1 cut(s)	3014
CsiI	ACCWGGT	1 cut(s)	948
Csp6I	GTAC	5 cut(s)	55, 186, 878, 1009, 3003
CspCI	CAANNNNNGTGG	4 cut(s)	1510, 1545, 2886, 2921
CviQI	GTAC	5 cut(s)	55, 186, 878, 1009, 3003
DraI	TTTAAA	1 cut(s)	196
DrdI	GACNNNNNNGTC	1 cut(s)	1082
DseDI	GACNNNNNNGTC	1 cut(s)	1082
Eam1104I	CTCTTC	5 cut(s)	164, 627, 1428, 2300, 2508
EarI	CTCTTC	5 cut(s)	164, 627, 1428, 2300, 2508
Ecl136II	GAGCTC	2 cut(s)	637, 1045
Eco130I	CCWWGG	1 cut(s)	2925
Eco24I	GRGCYC	3 cut(s)	639, 1047, 1463
Eco47I	GGWCC	3 cut(s)	1316, 1676, 1889
Eco53kI	GAGCTC	2 cut(s)	637, 1045
Eco57I	CTGAAG	3 cut(s)	1671, 2114, 2322
Eco81I	CCTNAGG	1 cut(s)	1038
Eco88I	CYCGRG	1 cut(s)	514
EcoICRI	GAGCTC	2 cut(s)	637, 1045
EcoO109I	RGGNCCY	2 cut(s)	1889, 3013
EcoRII	CCWGG	4 cut(s)	588, 948, 1615, 1945
EcoT14I	CCWWGG	1 cut(s)	2925
EcoT22I	ATGCAT	2 cut(s)	875, 2770
EcoT38I	GRGCYC	3 cut(s)	639, 1047, 1463
ErhI	CCWWGG	1 cut(s)	2925
FaqI	GGGAC	3 cut(s)	2272, 2303, 2752
FauNDI	CATATG	1 cut(s)	536
FbaI	TGATCA	3 cut(s)	333, 1981, 2347
FblI	GTMKAC	2 cut(s)	531, 2802
Fnu4HI	GCNGC	5 cut(s)	400, 463, 815, 818, 1148
FokI	GGATG	5 cut(s)	111, 431, 1425, 2510, 2761
FriOI	GRGCYC	3 cut(s)	639, 1047, 1463
Fsp4HI	GCNGC	5 cut(s)	400, 463, 815, 818, 1148
FspBI	CTAG	4 cut(s)	339, 459, 1640, 2555
FspI	TGCGCA	1 cut(s)	560
GlaI	GCGC	3 cut(s)	560, 2099, 2553
GluI	GCNGC	5 cut(s)	400, 463, 815, 818, 1148
GsaI	CCCAGC	1 cut(s)	2739
GsuI	CTGGAG	4 cut(s)	572, 1263, 1407, 1647
HaeII	RGCGCY	1 cut(s)	2101
HaeIII	GGCC	4 cut(s)	263, 1950, 2533, 3014
HapII	CCGG	5 cut(s)	487, 501, 821, 1132, 2849
HgaI	GACGC	1 cut(s)	3014
HhaI	GCGC	3 cut(s)	561, 2100, 2554
Hin6I	GCGC	3 cut(s)	559, 2098, 2552
HinP1I	GCGC	3 cut(s)	559, 2098, 2552
HincII	GTYRAC	3 cut(s)	1095, 1972, 2227
HindII	GTYRAC	3 cut(s)	1095, 1972, 2227
HindIII	AAGCTT	1 cut(s)	1930
HpaI	GTTAAC	1 cut(s)	1972
HpaII	CCGG	5 cut(s)	487, 501, 821, 1132, 2849
HphI	GGTGA	8 cut(s)	157, 378, 604, 605, 675, 2314, 2534, 2879
Hpy166II	GTNNAC	7 cut(s)	532, 1095, 1972, 2227, 2266, 2628, 2803
Hpy8I	GTNNAC	7 cut(s)	532, 1095, 1972, 2227, 2266, 2628, 2803
HpyAV	CCTTC	9 cut(s)	181, 228, 245, 330, 1695, 1907, 2912, 3027, 3031
HpyCH4III	ACNGT	7 cut(s)	443, 1186, 2053, 2263, 2728, 2747, 2807
HpyCH4IV	ACGT	2 cut(s)	480, 2292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	556, 1003, 1132, 1938, 1947
HpySE526I	ACGT	2 cut(s)	480, 2292
HspAI	GCGC	3 cut(s)	559, 2098, 2552
Kpn2I	TCCGGA	1 cut(s)	486
Ksp22I	TGATCA	3 cut(s)	333, 1981, 2347
KspAI	GTTAAC	1 cut(s)	1972
LguI	GCTCTTC	2 cut(s)	627, 2508
LmnI	GCTCC	6 cut(s)	545, 1003, 1042, 1628, 2078, 2921
Lsp1109I	GCAGC	5 cut(s)	411, 449, 804, 826, 1159
LweI	GCATC	4 cut(s)	618, 2488, 2586, 3125
MabI	ACCWGGT	1 cut(s)	948
MaeI	CTAG	4 cut(s)	339, 459, 1640, 2555
MaeII	ACGT	2 cut(s)	480, 2292
MfeI	CAATTG	1 cut(s)	998
MflI	RGATCY	4 cut(s)	888, 1176, 2252, 2517
MhlI	GDGCHC	4 cut(s)	639, 780, 1047, 1463
MlyI	GAGTC	5 cut(s)	1121, 1190, 1427, 2383, 2963
MmeI	TCCRAC	3 cut(s)	1827, 2495, 3053
Mph1103I	ATGCAT	2 cut(s)	875, 2770
MroI	TCCGGA	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	3045
MseI	TTAA	9 cut(s)	195, 212, 756, 1446, 1482, 1703, 1971, 2622, 3135
MslI	CAYNNNNRTG	2 cut(s)	749, 1070
MspA1I	CMGCKG	1 cut(s)	817
MspI	CCGG	5 cut(s)	487, 501, 821, 1132, 2849
MspR9I	CCNGG	5 cut(s)	590, 950, 1132, 1617, 1947
MunI	CAATTG	1 cut(s)	998
Mva1269I	GAATGC	1 cut(s)	561
MvaI	CCWGG	4 cut(s)	590, 950, 1617, 1947
MvnI	CGCG	1 cut(s)	2552
MwoI	GCNNNNNNNGC	5 cut(s)	556, 1003, 1132, 1938, 1947
NciI	CCSGG	1 cut(s)	1132
NcoI	CCATGG	1 cut(s)	2925
NdeI	CATATG	1 cut(s)	536
NheI	GCTAGC	1 cut(s)	458
NlaIV	GGNNCC	3 cut(s)	2519, 2923, 3015
NmuCI	GTSAC	6 cut(s)	518, 575, 593, 1218, 2540, 2867
NsbI	TGCGCA	1 cut(s)	560
NsiI	ATGCAT	2 cut(s)	875, 2770
NspI	RCATGY	3 cut(s)	873, 1081, 1216
NspV	TTCGAA	1 cut(s)	2986
PaeI	GCATGC	1 cut(s)	1216
PciI	ACATGT	1 cut(s)	1077
PciSI	GCTCTTC	2 cut(s)	627, 2508
PctI	GAATGC	1 cut(s)	561
PdmI	GAANNNNTTC	1 cut(s)	3045
PfeI	GAWTC	8 cut(s)	694, 1105, 1620, 1760, 2138, 2333, 2714, 3083
PkrI	GCNGC	5 cut(s)	401, 464, 816, 819, 1149
PleI	GAGTC	5 cut(s)	1120, 1190, 1426, 2383, 2962
PpsI	GAGTC	5 cut(s)	1120, 1190, 1426, 2383, 2962
PpuMI	RGGWCCY	1 cut(s)	1889
PscI	ACATGT	1 cut(s)	1077
PsiI	TTATAA	1 cut(s)	299
Psp124BI	GAGCTC	2 cut(s)	639, 1047
Psp5II	RGGWCCY	1 cut(s)	1889
Psp6I	CCWGG	4 cut(s)	588, 948, 1615, 1945
PspFI	CCCAGC	1 cut(s)	2735
PspGI	CCWGG	4 cut(s)	588, 948, 1615, 1945
PspN4I	GGNNCC	3 cut(s)	2519, 2923, 3015
PspPI	GGNCC	4 cut(s)	1316, 1676, 1889, 3013
PspPPI	RGGWCCY	1 cut(s)	1889
PsrI	GAACNNNNNNTAC	2 cut(s)	2870, 2902
PstI	CTGCAG	2 cut(s)	1149, 1474
PstNI	CAGNNNCTG	1 cut(s)	3055
PsuI	RGATCY	4 cut(s)	888, 1176, 2252, 2517
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	5 cut(s)	56, 187, 879, 1010, 3004
RsaNI	GTAC	5 cut(s)	55, 186, 878, 1009, 3003
RseI	CAYNNNNRTG	2 cut(s)	749, 1070
SacI	GAGCTC	2 cut(s)	639, 1047
SapI	GCTCTTC	2 cut(s)	627, 2508
SaqAI	TTAA	9 cut(s)	195, 212, 756, 1446, 1482, 1703, 1971, 2622, 3135
SatI	GCNGC	5 cut(s)	400, 463, 815, 818, 1148
Sau96I	GGNCC	4 cut(s)	1316, 1676, 1889, 3013
SbfI	CCTGCAGG	1 cut(s)	1474
SchI	GAGTC	5 cut(s)	1121, 1190, 1427, 2383, 2963
ScrFI	CCNGG	5 cut(s)	590, 950, 1132, 1617, 1947
SdaI	CCTGCAGG	1 cut(s)	1474
SduI	GDGCHC	4 cut(s)	639, 780, 1047, 1463
SexAI	ACCWGGT	1 cut(s)	948
SfaNI	GCATC	4 cut(s)	618, 2488, 2586, 3125
SfcI	CTRYAG	4 cut(s)	1145, 1278, 1470, 2803
SfuI	TTCGAA	1 cut(s)	2986
SinI	GGWCC	3 cut(s)	1316, 1676, 1889
SmiMI	CAYNNNNRTG	2 cut(s)	749, 1070
SmlI	CTYRAG	4 cut(s)	324, 770, 983, 2440
SmoI	CTYRAG	4 cut(s)	324, 770, 983, 2440
SpeI	ACTAGT	1 cut(s)	338
SphI	GCATGC	1 cut(s)	1216
Sse8387I	CCTGCAGG	1 cut(s)	1474
SsiI	CCGC	1 cut(s)	2300
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	4 cut(s)	339, 459, 1640, 2555
SstI	GAGCTC	2 cut(s)	639, 1047
StyD4I	CCNGG	5 cut(s)	588, 948, 1130, 1615, 1945
StyI	CCWWGG	1 cut(s)	2925
TaaI	ACNGT	7 cut(s)	443, 1186, 2053, 2263, 2728, 2747, 2807
TaiI	ACGT	2 cut(s)	483, 2295
TaqI	TCGA	9 cut(s)	505, 1429, 1463, 2143, 2185, 2274, 2986, 2998, 3060
TatI	WGTACW	2 cut(s)	54, 1008
TfiI	GAWTC	8 cut(s)	694, 1105, 1620, 1760, 2138, 2333, 2714, 3083
Tru1I	TTAA	9 cut(s)	195, 212, 756, 1446, 1482, 1703, 1971, 2622, 3135
Tru9I	TTAA	9 cut(s)	195, 212, 756, 1446, 1482, 1703, 1971, 2622, 3135
TscAI	CASTG	7 cut(s)	667, 756, 1030, 1072, 1212, 2290, 2731
TseFI	GTSAC	6 cut(s)	518, 575, 593, 1218, 2540, 2867
TseI	GCWGC	5 cut(s)	399, 462, 814, 817, 1147
Tsp45I	GTSAC	6 cut(s)	518, 575, 593, 1218, 2540, 2867
TspDTI	ATGAA	5 cut(s)	2151, 2171, 2763, 3050, 3075
TspGWI	ACGGA	2 cut(s)	557, 2499
TspRI	CASTG	7 cut(s)	667, 756, 1030, 1072, 1212, 2290, 2731
VpaK11BI	GGWCC	3 cut(s)	1316, 1676, 1889
XapI	RAATTY	6 cut(s)	799, 960, 988, 1564, 1714, 2032
XceI	RCATGY	3 cut(s)	873, 1081, 1216
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1507, 3040
XmiI	GTMKAC	2 cut(s)	531, 2802
XmnI	GAANNNNTTC	1 cut(s)	3045
XspI	CTAG	4 cut(s)	339, 459, 1640, 2555
Zsp2I	ATGCAT	2 cut(s)	875, 2770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.