Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006439

Physical Location & Seq

Genomic Coordinates Forward (+)

35827619 .. 35828655

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGCTGCCTTTGCTCAAAAGCTACATCGCAAGAGGAAATGGTGAAGGAATCTGATACAGTAGAACGCCCATTGAAGGATTATTCGGTTCAATTGATTGCTCCTACTCCCTCATTGAGAGATGACATTGTAGCAGAAGTAGGTGGTGGCGGTGGTGGGGCTGAGGGGTCAGTGCGCAGGTTATCAAGAACAGCCTCAAAAGCAAATGTGGGGAACAATGCTGGTAAAGATGATCGAAATAAAACCAAAGTCATCTCAAGGCCAGGGATTTCGAATCATCAAAGAGGGGCAACACTGGATTTAGGAGCAAGTGAAAGGGAAACTGTGATGTCTAGGATAGTAAGCATGCCACATGGGGCAAAGGGAGAACAAACTGCTGCTGGATGGCCATCATGGCTAACTTCGGTTGCAGGAGATGCCATCAAAGGATTGGACAAGGAACTTATAGCAGTGTATACAAAGCTCGCGACCTGGAAACTGGTAAAATCGTTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

166

Amino Acids

17.49

Weight (kDa)

9.14

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33770 AT1G71530 AT1G71530 AT1G71530 AT1G71530 AT4G10010 AT4G10010
fragaria_vesca	FvH4_5g33160 FvH4_5g33160
malus_domestica	MD08G1214900.v1.1 MD15G1397900.v1.1
prunus_persica	Prupe.1G546300_v2.0.a1 Prupe.1G546300_v2.0.a1
pyrus_communis	pycom15g35760
rosa_chinensis	RchiOBHm_Chr7g0231421
rosa_laevigata	RLG00000001418
rosa_multiflora	Rmu_sc0003396.1_g000031 Rmu_sc0010066.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229330
rosa_rugosa	Rorug07G0266500 Rorug07G0266500
rosa_samantha	Rh7AG420800 Rh7BG395200 Rh7CG440900 Rh7DG413400
rosa_wichuraiana	Rw7G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	1 cut(s)	467
AciI	CCGC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	76, 92
AjnI	CCWGG	2 cut(s)	262, 470
AluBI	AGCT	2 cut(s)	23, 463
AluI	AGCT	2 cut(s)	23, 463
AoxI	GGCC	2 cut(s)	260, 386
ApeKI	GCWGC	2 cut(s)	6, 377
AspLEI	GCGC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	3 cut(s)	378, 397, 428
BciT130I	CCWGG	2 cut(s)	264, 472
BfaI	CTAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	7, 378
BlsI	GCNGC	2 cut(s)	8, 379
Bme1390I	CCNGG	2 cut(s)	264, 472
BmrFI	CCNGG	2 cut(s)	264, 472
BmsI	GCATC	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	300, 483
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	264, 472
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	389
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	300, 483
BseXI	GCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	262, 388
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	2 cut(s)	262, 388
Bsp119I	TTCGAA	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	232
Bsp68I	TCGCGA	1 cut(s)	467
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	2 cut(s)	262, 388
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	467
BspMI	ACCTGC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	300, 483
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	232
BssNAI	GTATAC	1 cut(s)	456
Bst1107I	GTATAC	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	264, 472
Bst4CI	ACNGT	2 cut(s)	61, 325
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	347, 465
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 200, 394, 416
BstNI	CCWGG	2 cut(s)	264, 472
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	262, 470
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	1 cut(s)	364
BstZ17I	GTATAC	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	262, 388
BtgZI	GCGATG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	3 cut(s)	177, 293, 456
BtuMI	TCGCGA	1 cut(s)	467
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	347, 465
CfoI	GCGC	1 cut(s)	177
CviAII	CATG	3 cut(s)	346, 353, 393
CviJI	RGCY	8 cut(s)	6, 23, 161, 194, 262, 388, 397, 463
CviKI_1	RGCY	8 cut(s)	6, 23, 161, 194, 262, 388, 397, 463
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	262, 470
FaeI	CATG	3 cut(s)	349, 356, 396
FaiI	YATR	5 cut(s)	347, 354, 394, 446, 456
FatI	CATG	3 cut(s)	345, 352, 392
FblI	GTMKAC	1 cut(s)	455
Fnu4HI	GCNGC	2 cut(s)	7, 378
FokI	GGATG	1 cut(s)	396
Fsp4HI	GCNGC	2 cut(s)	7, 378
FspBI	CTAG	1 cut(s)	333
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	2 cut(s)	7, 378
HaeIII	GGCC	2 cut(s)	262, 388
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	349, 356, 396
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	50, 274
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	186, 466
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	2 cut(s)	40, 70
HpyCH4III	ACNGT	2 cut(s)	61, 325
HpyCH4V	TGCA	2 cut(s)	410, 493
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 200, 394, 416
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	349, 356, 396
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	106, 305
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	406
MaeI	CTAG	1 cut(s)	333
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MfeI	CAATTG	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	388
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	388
MnlI	CCTC	5 cut(s)	28, 121, 157, 205, 278
Mox20I	TGGCCA	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	388
Msp20I	TGGCCA	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	264, 472
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	264, 472
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	4 cut(s)	12, 200, 394, 416
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	349, 356, 396
NruI	TCGCGA	1 cut(s)	467
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	50, 274
PkrI	GCNGC	2 cut(s)	8, 379
Psp6I	CCWGG	2 cut(s)	262, 470
PspGI	CCWGG	2 cut(s)	262, 470
RruI	TCGCGA	1 cut(s)	467
SatI	GCNGC	2 cut(s)	7, 378
Sau3AI	GATC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	264, 472
SetI	ASST	5 cut(s)	25, 145, 182, 465, 473
SfaNI	GCATC	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SphI	GCATGC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	262, 470
TaaI	ACNGT	2 cut(s)	61, 325
TaqI	TCGA	2 cut(s)	235, 272
TasI	AATT	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	50, 274
TscAI	CASTG	3 cut(s)	177, 300, 456
TseI	GCWGC	2 cut(s)	6, 377
TspRI	CASTG	3 cut(s)	177, 300, 456
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.