pycom15g39100

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0014565
Physical Location & Seq
Forward (+)
38790887 .. 38796810
5924 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g39100.2

Sequence Viewer

Length: 1566 bp
ATGCCTCCGCCGCCGCTGAAACTCAAGCAATCTTCTGCTTCTTCCACCAATCAAACCCTCACCACCACCGCCACTAGCGCCCAGGACGCGCGCCTGCTCGTCCGTGAAACGCTGCGTATCAGTGCAAACCTCGCTTCTTCCGCTCCCTCCCAGGCTCTGCCTTTGGACACCCAAGCCCCCAAGCATCAGCTTCCCCAGCTGCTCCACCACGATCAAGACTTCGTGGGATCCAGCTTCAGATTGATTTGCTGCGAGGAGATTGACGGCCGCCGATGGAACTACGTCGCCGAGCCCGATTCCTCCTCCTCCTCCTCTGCTGCAACCACCTTCAAGAAGGGCTCTTTTCGCGCCCTTAGCTTGCACAGCCCCCAACCACCTCTCGACGGTTTGATGTCTTTCGTAAGGTCATATGTTGTCCCCGAAGGTTTCCCTGATAGTGTAATCCCTTCCTATGTCCCCTACATGACATGGAGAGCTCTCAAGCACTTCTTTGGTGGCGCAATGGGTGTTTTTACAACACAAACCCTTTTGAATTCAGTTGGAGTCTCTAGAAATACAGCTGCTCCTGGGGCTGTTGCTATCAACTGGATTCTCAAGGATGGTGCTGGGCGGGTTGGAAAAATGCTTTTTGCCCGACAAGGAAAGAAATTTGATTATGATCTAAAACAGTTGCGGTTTGCTGGTGATCTTCTCATGGAGTTGGGTGCAGGAGTAGAGTTGGCAACTGCAGCTGTCCCGCACCTGTTTCTTCCTTTGGCTTGTGCGGCGAATGTGGCAAAGAATGTTGCTGCTGTAACATCAACATCAACTCGAACACCAATTTACAAAGCGTTTGCAAAAGGAGAAAACATTGGAGATGTGACAGCTAAAGGAGAATGTGTTGGCAATATTGCGGATCTGCTGGGAACTGGCCTGAGCATATTAATCTCAAAAAGAAATCCATCACTGATAACTACATTTGCGCTCCTTTCATGTGGATACGTTGTCAGCTCCTACCAAGAGGTTAAATCTGTAGTACTGCACACCTTGAACCGAGCAAGATTCAGTGTGGCAGTAGATGCCTTTCTTAAAACAGGGCGAGTGCCGTCGTTGCAGGAAGGGAACTTGAAGGAAAATGTTTTCAATTTTCCCTGGGTGAAAGATGGGCCTGTTGTTCTCGGACCACGATTTAAAGATGCATTCCAAGAGCCAAGTGTATATCTTGCGATAGAGCCCTTCTTTGAGAAAGAGAGATATGTTGTGACATATAATCCTTCAAAAGGTAAAGTGTACGCATTGTTCAACGATCAAGCGAAGTCAGATGACATACTAAAGGCGGCATTTCATGCTCAGGTACTTCTATATTTCATGCAATCATCATACGACAGTCAGCATATGTATCAGAAGGAGAAGAAAGATGAATTTTTAAAATTTGAGCCCACAGCTAAAGATCTGGAGGCGTGCATTGTTGAGTCATGTAAGATGGTCTCAACTAAGTATGGGATTTTCAAGAGTAAAGCTAAAGAGCAGGGATGGATGATGTCAGAAGCACATCTCAATCCTGGCCGAGCTCGTCTGATCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

522

Amino Acids

57.15

Weight (kDa)

9.22

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49820
fragaria_vesca FvH4_5g27690
malus_domestica MD08G1248500.v1.1 MD15G1443300.v1.1
prunus_persica Prupe.1G585900_v2.0.a1
pyrus_communis pycom08g21530 pycom15g39100
rosa_chinensis RchiOBHm_Chr7g0219391
rosa_laevigata RLG00000002291
rosa_multiflora Rmu_sc0002460.1_g000012
rosa_roxburghii Rroxscaffold_3G00240060
rosa_rugosa Rorug07G0184800
rosa_samantha Rh7AG327700 Rh7CG345000 Rh7DG323100
rosa_wichuraiana Rw7G027590 Rw7G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 3 cut(s) 89, 91, 348
AclWI GGATC 3 cut(s) 222, 235, 903
AcoI YGGCCR 2 cut(s) 265, 1543
AcsI RAATTY 4 cut(s) 532, 647, 1400, 1409
AcuI CTGAAG 1 cut(s) 220
AfaI GTAC 3 cut(s) 1017, 1271, 1335
AfiI CCNNNNNNNGG 2 cut(s) 383, 1259
AgsI TTSAA 8 cut(s) 331, 532, 1030, 1108, 1123, 1257, 1282, 1489
AjnI CCWGG 5 cut(s) 81, 150, 565, 1130, 1540
Alw21I GWGCWC 2 cut(s) 478, 1552
Alw26I GTCTC 2 cut(s) 550, 1471
AlwI GGATC 3 cut(s) 222, 235, 903
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 4 cut(s) 265, 910, 1145, 1543
ApeKI GCWGC 7 cut(s) 112, 199, 249, 317, 560, 728, 788
ApoI RAATTY 4 cut(s) 532, 647, 1400, 1409
AseI ATTAAT 1 cut(s) 923
AspLEI GCGC 6 cut(s) 80, 91, 93, 350, 500, 964
AspS9I GGNCC 2 cut(s) 1145, 1160
AsuHPI GGTGA 3 cut(s) 52, 695, 1147
AvaII GGWCC 1 cut(s) 1160
BamHI GGATCC 1 cut(s) 227
BanII GRGCYC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
Bbv12I GWGCWC 2 cut(s) 478, 1552
BbvI GCAGC 7 cut(s) 99, 186, 236, 304, 547, 740, 775
BccI CCATC 6 cut(s) 267, 593, 949, 1136, 1456, 1506
BceAI ACGGC 2 cut(s) 280, 1069
BciT130I CCWGG 5 cut(s) 83, 152, 567, 1132, 1542
BciVI GTATCC 1 cut(s) 971
BclI TGATCA 1 cut(s) 1557
BcoDI GTCTC 2 cut(s) 550, 1471
BfaI CTAG 2 cut(s) 75, 549
BfmI CTRYAG 2 cut(s) 726, 1011
BfoI RGCGCY 1 cut(s) 81
BfuI GTATCC 1 cut(s) 971
BglII AGATCT 1 cut(s) 1429
BmcAI AGTACT 1 cut(s) 1017
Bme1390I CCNGG 5 cut(s) 83, 152, 567, 1132, 1542
Bme18I GGWCC 1 cut(s) 1160
BmgT120I GGNCC 2 cut(s) 1145, 1160
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 5 cut(s) 83, 152, 567, 1132, 1542
BmsI GCATC 3 cut(s) 193, 1048, 1165
BpmI CTGGAG 1 cut(s) 1454
Bpu10I CCTNAGC 3 cut(s) 353, 914, 1329
BpuEI CTTGAG 3 cut(s) 8, 464, 578
BsaBI GATNNNNATC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 1471
BsaJI CCNNGG 5 cut(s) 81, 150, 566, 1130, 1131
BsaXI ACNNNNNCTCC 4 cut(s) 547, 577, 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 1259
Bse1I ACTGG 2 cut(s) 590, 913
Bse3DI GCAATG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 5 cut(s) 83, 152, 567, 1132, 1542
BseDI CCNNGG 5 cut(s) 81, 150, 566, 1130, 1131
BseGI GGATG 3 cut(s) 604, 1517, 1521
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 2 cut(s) 383, 1259
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 905, 1343
BseNI ACTGG 2 cut(s) 590, 913
BsePI GCGCGC 1 cut(s) 89
BseRI GAGGAG 5 cut(s) 269, 292, 295, 298, 301
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 7 cut(s) 99, 186, 236, 304, 547, 740, 775
BseYI CCCAGC 3 cut(s) 195, 605, 901
BsgI GTGCAG 2 cut(s) 726, 1004
Bsh1236I CGCG 3 cut(s) 89, 91, 348
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 4 cut(s) 267, 912, 1147, 1545
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 478, 1552
BslFI GGGAC 3 cut(s) 401, 440, 719
BslI CCNNNNNNNGG 2 cut(s) 383, 1259
BsmAI GTCTC 2 cut(s) 550, 1471
BsmFI GGGAC 3 cut(s) 401, 440, 719
BsmI GAATGC 1 cut(s) 1178
BsnI GGCC 4 cut(s) 267, 912, 1147, 1545
Bso31I GGTCTC 1 cut(s) 1471
Bsp1286I GDGCHC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
Bsp143I GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
BspANI GGCC 4 cut(s) 267, 912, 1147, 1545
BspCNI CTCAG 2 cut(s) 906, 1342
BspFNI CGCG 3 cut(s) 89, 91, 348
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 730
BspPI GGATC 3 cut(s) 222, 235, 903
BspTNI GGTCTC 1 cut(s) 1471
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 590, 913
BssECI CCNNGG 5 cut(s) 81, 150, 566, 1130, 1131
BssHII GCGCGC 1 cut(s) 89
BssMI GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
Bst2UI CCWGG 5 cut(s) 83, 152, 567, 1132, 1542
Bst4CI ACNGT 3 cut(s) 386, 669, 1367
BstAPI GCANNNNNTGC 2 cut(s) 1058, 1325
BstC8I GCNNGC 4 cut(s) 91, 95, 359, 1441
BstDEI CTNAG 4 cut(s) 353, 914, 1329, 1473
BstENI CCTNNNNNAGG 1 cut(s) 1257
BstF5I GGATG 3 cut(s) 604, 1517, 1521
BstFNI CGCG 3 cut(s) 89, 91, 348
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 6 cut(s) 80, 91, 93, 350, 500, 964
BstKTI GATC 8 cut(s) 214, 230, 661, 688, 898, 1288, 1432, 1560
BstMAI GTCTC 2 cut(s) 550, 1471
BstMBI GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
BstMCI CGRYCG 1 cut(s) 268
BstNI CCWGG 5 cut(s) 83, 152, 567, 1132, 1542
BstSCI CCNGG 5 cut(s) 81, 150, 565, 1130, 1540
BstSFI CTRYAG 2 cut(s) 726, 1011
BstUI CGCG 3 cut(s) 89, 91, 348
BstV1I GCAGC 7 cut(s) 99, 186, 236, 304, 547, 740, 775
BstX2I RGATCY 3 cut(s) 227, 895, 1429
BstYI RGATCY 3 cut(s) 227, 895, 1429
BstZI CGGCCG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 971
BsuRI GGCC 4 cut(s) 267, 912, 1147, 1545
BtsCI GGATG 3 cut(s) 604, 1517, 1521
BtsIMutI CAGTG 3 cut(s) 127, 944, 1051
Cac8I GCNNGC 4 cut(s) 91, 95, 359, 1441
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 6 cut(s) 80, 91, 93, 350, 500, 964
Cfr13I GGNCC 2 cut(s) 1145, 1160
CseI GACGC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 1016, 1270, 1334
CviAII CATG 7 cut(s) 463, 468, 694, 972, 1325, 1348, 1455
CviQI GTAC 3 cut(s) 1016, 1270, 1334
DdeI CTNAG 4 cut(s) 353, 914, 1329, 1473
DpnI GATC 8 cut(s) 213, 229, 660, 687, 897, 1287, 1431, 1559
DpnII GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
DraI TTTAAA 2 cut(s) 1171, 1407
EaeI YGGCCR 2 cut(s) 265, 1543
EagI CGGCCG 1 cut(s) 265
Ecl136II GAGCTC 2 cut(s) 476, 1550
EclXI CGGCCG 1 cut(s) 265
Eco24I GRGCYC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
Eco31I GGTCTC 1 cut(s) 1471
Eco47I GGWCC 1 cut(s) 1160
Eco52I CGGCCG 1 cut(s) 265
Eco53kI GAGCTC 2 cut(s) 476, 1550
Eco57I CTGAAG 1 cut(s) 220
EcoICRI GAGCTC 2 cut(s) 476, 1550
EcoNI CCTNNNNNAGG 1 cut(s) 1257
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 5 cut(s) 81, 150, 565, 1130, 1540
EcoT22I ATGCAT 1 cut(s) 1180
EcoT38I GRGCYC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
FaeI CATG 7 cut(s) 466, 471, 697, 975, 1328, 1351, 1458
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 3 cut(s) 401, 440, 719
FatI CATG 7 cut(s) 462, 467, 693, 971, 1324, 1347, 1454
FauI CCCGC 2 cut(s) 603, 744
FauNDI CATATG 2 cut(s) 409, 1374
FbaI TGATCA 1 cut(s) 1557
FokI GGATG 3 cut(s) 611, 1524, 1528
FriOI GRGCYC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
FspBI CTAG 2 cut(s) 75, 549
GlaI GCGC 6 cut(s) 79, 90, 92, 349, 499, 963
GsaI CCCAGC 3 cut(s) 199, 609, 905
GsuI CTGGAG 1 cut(s) 1454
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 4 cut(s) 267, 912, 1147, 1545
HgaI GACGC 1 cut(s) 95
HhaI GCGC 6 cut(s) 80, 91, 93, 350, 500, 964
Hin1II CATG 7 cut(s) 466, 471, 697, 975, 1328, 1351, 1458
Hin6I GCGC 6 cut(s) 78, 89, 91, 348, 498, 962
HinP1I GCGC 6 cut(s) 78, 89, 91, 348, 498, 962
HinfI GANTC 5 cut(s) 296, 543, 589, 1041, 1451
HphI GGTGA 3 cut(s) 52, 695, 1147
Hpy166II GTNNAC 1 cut(s) 1270
Hpy188I TCNGA 6 cut(s) 239, 1160, 1300, 1383, 1525, 1557
Hpy188III TCNNGA 6 cut(s) 215, 331, 380, 549, 1433, 1489
Hpy8I GTNNAC 1 cut(s) 1270
Hpy99I CGWCG 3 cut(s) 287, 386, 1090
HpyAV CCTTC 9 cut(s) 328, 337, 416, 456, 1091, 1102, 1225, 1263, 1378
HpyCH4III ACNGT 3 cut(s) 386, 669, 1367
HpyCH4IV ACGT 2 cut(s) 282, 981
HpyF3I CTNAG 4 cut(s) 353, 914, 1329, 1473
HpySE526I ACGT 2 cut(s) 282, 981
Hsp92II CATG 7 cut(s) 466, 471, 697, 975, 1328, 1351, 1458
HspAI GCGC 6 cut(s) 78, 89, 91, 348, 498, 962
Ksp22I TGATCA 1 cut(s) 1557
Kzo9I GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
LmnI GCTCC 5 cut(s) 148, 207, 568, 969, 995
Lsp1109I GCAGC 7 cut(s) 99, 186, 236, 304, 547, 740, 775
LweI GCATC 3 cut(s) 193, 1048, 1165
MaeI CTAG 2 cut(s) 75, 549
MaeII ACGT 2 cut(s) 282, 981
MaeIII GTNAC 3 cut(s) 793, 859, 1240
MalI GATC 8 cut(s) 213, 229, 660, 687, 897, 1287, 1431, 1559
MbiI CCGCTC 1 cut(s) 143
MboI GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
MboII GAAGA 6 cut(s) 24, 33, 129, 680, 740, 1402
MflI RGATCY 3 cut(s) 227, 895, 1429
MhlI GDGCHC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
MluCI AATT 6 cut(s) 532, 647, 819, 1123, 1400, 1409
MlyI GAGTC 2 cut(s) 552, 1460
MmeI TCCRAC 2 cut(s) 520, 595
Mph1103I ATGCAT 1 cut(s) 1180
MseI TTAA 5 cut(s) 923, 1005, 1068, 1170, 1406
MspA1I CMGCKG 4 cut(s) 16, 199, 560, 731
MspR9I CCNGG 5 cut(s) 83, 152, 567, 1132, 1542
Mva1269I GAATGC 1 cut(s) 1178
MvaI CCWGG 5 cut(s) 83, 152, 567, 1132, 1542
MvnI CGCG 3 cut(s) 89, 91, 348
NdeI CATATG 2 cut(s) 409, 1374
NdeII GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
NlaIII CATG 7 cut(s) 466, 471, 697, 975, 1328, 1351, 1458
NlaIV GGNNCC 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 859, 1240
NsiI ATGCAT 1 cut(s) 1180
PasI CCCWGGG 1 cut(s) 1131
PauI GCGCGC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 1178
PfeI GAWTC 3 cut(s) 296, 589, 1041
PleI GAGTC 2 cut(s) 551, 1459
PpsI GAGTC 2 cut(s) 551, 1459
PshBI ATTAAT 1 cut(s) 923
Psp124BI GAGCTC 2 cut(s) 478, 1552
Psp6I CCWGG 5 cut(s) 81, 150, 565, 1130, 1540
PspFI CCCAGC 3 cut(s) 195, 605, 901
PspGI CCWGG 5 cut(s) 81, 150, 565, 1130, 1540
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 1145, 1160
PsrI GAACNNNNNNTAC 2 cut(s) 1262, 1294
PstI CTGCAG 1 cut(s) 730
PstNI CAGNNNCTG 1 cut(s) 157
PsuI RGATCY 3 cut(s) 227, 895, 1429
PteI GCGCGC 1 cut(s) 89
PvuII CAGCTG 3 cut(s) 199, 560, 731
RsaI GTAC 3 cut(s) 1017, 1271, 1335
RsaNI GTAC 3 cut(s) 1016, 1270, 1334
SacI GAGCTC 2 cut(s) 478, 1552
SaqAI TTAA 5 cut(s) 923, 1005, 1068, 1170, 1406
Sau3AI GATC 8 cut(s) 211, 227, 658, 685, 895, 1285, 1429, 1557
Sau96I GGNCC 2 cut(s) 1145, 1160
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 2 cut(s) 552, 1460
ScrFI CCNGG 5 cut(s) 83, 152, 567, 1132, 1542
SduI GDGCHC 6 cut(s) 294, 341, 478, 1215, 1419, 1552
SfaNI GCATC 3 cut(s) 193, 1048, 1165
SfcI CTRYAG 2 cut(s) 726, 1011
SinI GGWCC 1 cut(s) 1160
SmlI CTYRAG 3 cut(s) 23, 479, 593
SmoI CTYRAG 3 cut(s) 23, 479, 593
Sse9I AATT 6 cut(s) 532, 647, 819, 1123, 1400, 1409
SspI AATATT 1 cut(s) 889
SspMI CTAG 2 cut(s) 75, 549
SstI GAGCTC 2 cut(s) 478, 1552
StyD4I CCNGG 5 cut(s) 81, 150, 565, 1130, 1540
TaaI ACNGT 3 cut(s) 386, 669, 1367
TaiI ACGT 2 cut(s) 285, 984
TaqI TCGA 2 cut(s) 381, 811
TasI AATT 6 cut(s) 532, 647, 819, 1123, 1400, 1409
TatI WGTACW 1 cut(s) 1015
TauI GCSGC 5 cut(s) 13, 16, 270, 767, 1319
TfiI GAWTC 3 cut(s) 296, 589, 1041
Tru1I TTAA 5 cut(s) 923, 1005, 1068, 1170, 1406
Tru9I TTAA 5 cut(s) 923, 1005, 1068, 1170, 1406
TscAI CASTG 3 cut(s) 127, 951, 1051
TseFI GTSAC 2 cut(s) 859, 1240
TseI GCWGC 7 cut(s) 112, 199, 249, 317, 560, 728, 788
Tsp45I GTSAC 2 cut(s) 859, 1240
TspDTI ATGAA 4 cut(s) 960, 1313, 1336, 1413
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 3 cut(s) 127, 951, 1051
VpaK11BI GGWCC 1 cut(s) 1160
VspI ATTAAT 1 cut(s) 923
XagI CCTNNNNNAGG 1 cut(s) 1257
XapI RAATTY 4 cut(s) 532, 647, 1400, 1409
XbaI TCTAGA 1 cut(s) 548
XspI CTAG 2 cut(s) 75, 549
ZrmI AGTACT 1 cut(s) 1017
Zsp2I ATGCAT 1 cut(s) 1180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.