Rorug07G0184800

UPF0420 protein C16orf58 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014565
Physical Location & Seq
Forward (+)
15453441 .. 15455114
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0184800.1

Sequence Viewer

Length: 1674 bp
ATGGTGAAGAGCACAGAGCGCGTCTGCCACTACGAGACCTTAGGCCTCGAACCAAATTGCTCAGAAAAAGAAATCAAGGCTGCTCACAGGAAACTAATCCTCACGTACCATTGGGACAAATGTAGATCATCCCAATGCGGCTTGTCCCAAGAAGAAGCCACTGCTAAATTTTTAGAGGTCCAACAAGCCTACGAAATCCTTATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACCTACGCTGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTACCCTTTGACGACATCGTCTTCAACGGCTACTCCAGCTCCTGCCGCAGCTTCTACAATGTCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTTCAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGATCTCCCGCAGAGGGGTGAAGGAATGGTCCAGCATAAACATGAAGGCGAGGAAGAAAGCAAAGAAGGAATACAACAATAAGGTGCGGAGTTTGACTCAAACTGCGAAAAGGCTCGACAGGAGGGTCATGCAGATGGTAGCAAAGAGGGAGGAGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGAAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATGGAGTATGAGGAGCAGGAGTGGACGAAACCGGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTAGTTTGTAGGAAGGTGTTTAGGAGTGAGCGGCAGTGCAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAAAACCAGATGAAGAAGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATAGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATGGGTGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACGATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCACGGCGACCAGTAGTCAAGAGGTAAACAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACACCAATAAGAATGGAGAAGATAGGAAACCGAGGAGGAGAAGAGCCAAGAGTACTAGAAATAACGAACATGATGGTTCAAATATGAAGGAATCCAAACCTGATTGTAACGCAGAAAAAGGATATGATGAGGATCAGATCAAGAAAATGAAGGGTGGAGGGAGGAAAGAGAGGAGCGGTAAGAAGAGTAACGGTAAAGGAGATATTGAGCAGAAGAAAATGAGAAGTGGAGGAAGGAGGGAAGAGAAGAAGGCTAAGAATAGAAATGGTGGAGAAAGAAGAATTAATGAGCATGGTACATCCTATTTTTCTGCTGTGAATGAGAGTTATCTGAACATGTTACATCTGATATTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

557

Amino Acids

65.82

Weight (kDa)

5.85

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 4.2e-17 DnaJ domain
ZUO1-like_ZHD PF21884 119 - 228 3e-16 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 294 - 318 1.1e-06 Zinc-finger double-stranded RNA-binding
zf-met PF12874 294 - 318 4.3e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49820
fragaria_vesca FvH4_5g27690
malus_domestica MD08G1248500.v1.1 MD15G1443300.v1.1
prunus_persica Prupe.1G585900_v2.0.a1
pyrus_communis pycom08g21530 pycom15g39100
rosa_chinensis RchiOBHm_Chr7g0219391
rosa_laevigata RLG00000002291
rosa_multiflora Rmu_sc0002460.1_g000012
rosa_roxburghii Rroxscaffold_3G00240060
rosa_rugosa Rorug07G0184800
rosa_samantha Rh7AG327700 Rh7CG345000 Rh7DG323100
rosa_wichuraiana Rw7G027590 Rw7G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 680
Acc36I ACCTGC 1 cut(s) 414
AccBSI CCGCTC 2 cut(s) 919, 1491
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 21, 384
AciI CCGC 9 cut(s) 138, 238, 328, 565, 643, 754, 919, 958, 1491
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1455
AcsI RAATTY 2 cut(s) 167, 415
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 4 cut(s) 107, 285, 1369, 1612
AfiI CCNNNNNNNGG 3 cut(s) 440, 570, 571
AflIII ACRYGT 1 cut(s) 1650
AgeI ACCGGT 1 cut(s) 814
AhdI GACNNNNNGTC 1 cut(s) 1260
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 321, 333, 1114, 1309
AluI AGCT 4 cut(s) 321, 333, 1114, 1309
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 29, 867
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1455
AlwNI CAGNNNCTG 1 cut(s) 324
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 80, 330
ApoI RAATTY 2 cut(s) 167, 415
AseI ATTAAT 1 cut(s) 1599
AsiGI ACCGGT 1 cut(s) 814
Asp700I GAANNNNTTC 1 cut(s) 1221
AspLEI GCGC 3 cut(s) 21, 384, 386
AspS9I GGNCC 2 cut(s) 178, 585
AsuHPI GGTGA 5 cut(s) 16, 586, 787, 1139, 1226
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BamHI GGATCC 2 cut(s) 205, 529
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 67, 342
BccI CCATC 5 cut(s) 685, 1079, 1156, 1195, 1382
BceAI ACGGC 3 cut(s) 325, 394, 1266
BcoDI GTCTC 2 cut(s) 29, 867
BfaI CTAG 1 cut(s) 1371
BfuAI ACCTGC 1 cut(s) 414
BglII AGATCT 1 cut(s) 558
BisI GCNGC 5 cut(s) 81, 139, 328, 331, 920
BlsI GCNGC 5 cut(s) 82, 140, 329, 332, 921
BmcAI AGTACT 1 cut(s) 1369
Bme18I GGWCC 2 cut(s) 178, 585
BmeRI GACNNNNNGTC 1 cut(s) 1260
BmgT120I GGNCC 2 cut(s) 178, 585
BmiI GGNNCC 2 cut(s) 207, 531
BmsI GCATC 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 637, 669
BpmI CTGGAG 2 cut(s) 301, 417
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1446
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 410, 1248, 1346
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 570, 571
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 2 cut(s) 494, 1257
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1185
Bse8I GATNNNNATC 1 cut(s) 1446
BseDI CCNNGG 3 cut(s) 410, 1248, 1346
BseGI GGATG 3 cut(s) 128, 1162, 1613
BseJI GATNNNNATC 1 cut(s) 1446
BseLI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BseMI GCAATG 1 cut(s) 1185
BseMII CTCAG 2 cut(s) 75, 456
BseNI ACTGG 2 cut(s) 494, 1257
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 67, 342
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 1 cut(s) 946
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 3 cut(s) 128, 130, 239
BslI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BsmAI GTCTC 2 cut(s) 29, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 3 cut(s) 128, 130, 239
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
BspACI CCGC 9 cut(s) 138, 238, 328, 565, 643, 754, 919, 958, 1491
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 74, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 2 cut(s) 207, 531
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1455
BspQI GCTCTTC 2 cut(s) 2, 1351
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 2 cut(s) 919, 1491
BsrDI GCAATG 1 cut(s) 1185
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 2 cut(s) 494, 1257
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 3 cut(s) 410, 1248, 1346
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
Bst4CI ACNGT 1 cut(s) 1508
Bst6I CTCTTC 8 cut(s) 2, 821, 1011, 1065, 1200, 1351, 1493, 1551
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 6 cut(s) 40, 61, 465, 551, 1115, 1569
BstDSI CCRYGG 2 cut(s) 410, 1248
BstF5I GGATG 3 cut(s) 128, 1162, 1613
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 3 cut(s) 21, 384, 386
BstKTI GATC 7 cut(s) 128, 208, 532, 550, 561, 1450, 1455
BstMAI GTCTC 2 cut(s) 29, 867
BstMBI GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
BstMWI GCNNNNNNNGC 5 cut(s) 18, 318, 327, 1184, 1306
BstNSI RCATGY 1 cut(s) 1654
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 2 cut(s) 67, 342
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 205, 529, 558
BstYI RGATCY 3 cut(s) 205, 529, 558
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 410, 1248
BtsCI GGATG 3 cut(s) 128, 1162, 1613
BtsI GCAGTG 2 cut(s) 159, 929
BtsIMutI CAGTG 2 cut(s) 159, 929
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 324
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 21, 384, 386
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 178, 585
CseI GACGC 1 cut(s) 10
Csp6I GTAC 4 cut(s) 106, 284, 1368, 1611
CspAI ACCGGT 1 cut(s) 814
CviQI GTAC 4 cut(s) 106, 284, 1368, 1611
DdeI CTNAG 6 cut(s) 40, 61, 465, 551, 1115, 1569
DpnI GATC 7 cut(s) 127, 207, 531, 549, 560, 1449, 1454
DpnII GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
DrdI GACNNNNNNGTC 2 cut(s) 299, 680
DriI GACNNNNNGTC 1 cut(s) 1260
DseDI GACNNNNNNGTC 2 cut(s) 299, 680
Eam1104I CTCTTC 8 cut(s) 2, 821, 1011, 1065, 1200, 1351, 1493, 1551
Eam1105I GACNNNNNGTC 1 cut(s) 1260
EarI CTCTTC 8 cut(s) 2, 821, 1011, 1065, 1200, 1351, 1493, 1551
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
EcoRI GAATTC 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 1209, 1241
FaqI GGGAC 3 cut(s) 128, 130, 239
FauI CCCGC 1 cut(s) 572
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 81, 139, 328, 331, 920
FokI GGATG 3 cut(s) 115, 1169, 1600
Fsp4HI GCNGC 5 cut(s) 81, 139, 328, 331, 920
FspBI CTAG 1 cut(s) 1371
GlaI GCGC 3 cut(s) 20, 383, 385
GluI GCNGC 5 cut(s) 81, 139, 328, 331, 920
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 2 cut(s) 301, 417
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 10
HhaI GCGC 3 cut(s) 21, 384, 386
Hin6I GCGC 3 cut(s) 19, 382, 384
HinP1I GCGC 3 cut(s) 19, 382, 384
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 4 cut(s) 652, 931, 1229, 1406
HpaII CCGG 1 cut(s) 815
HphI GGTGA 5 cut(s) 16, 586, 787, 1139, 1226
Hpy166II GTNNAC 4 cut(s) 346, 424, 807, 1273
Hpy188I TCNGA 7 cut(s) 64, 352, 558, 1104, 1452, 1647, 1662
Hpy188III TCNNGA 8 cut(s) 434, 449, 464, 935, 1172, 1226, 1265, 1456
Hpy8I GTNNAC 4 cut(s) 346, 424, 807, 1273
HpyCH4III ACNGT 1 cut(s) 1508
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 688, 927, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 318, 327, 1184, 1306
HpyF3I CTNAG 6 cut(s) 40, 61, 465, 551, 1115, 1569
HpySE526I ACGT 1 cut(s) 104
HspAI GCGC 3 cut(s) 19, 382, 384
Kzo9I GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
LguI GCTCTTC 2 cut(s) 2, 1351
LmnI GCTCC 4 cut(s) 326, 796, 1297, 1488
Lsp1109I GCAGC 2 cut(s) 67, 342
LweI GCATC 1 cut(s) 961
MaeI CTAG 1 cut(s) 1371
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 4 cut(s) 839, 1421, 1502, 1653
MalI GATC 7 cut(s) 127, 207, 531, 549, 560, 1449, 1454
MbiI CCGCTC 2 cut(s) 919, 1491
MboI GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
MflI RGATCY 3 cut(s) 205, 529, 558
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 55, 167, 415, 476, 1596
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 3 cut(s) 205, 966, 1033
MroXI GAANNNNTTC 1 cut(s) 1221
MseI TTAA 3 cut(s) 974, 1092, 1599
MslI CAYNNNNRTG 3 cut(s) 133, 596, 689
MspI CCGG 1 cut(s) 815
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 5 cut(s) 18, 318, 327, 1184, 1306
NdeII GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
NlaIV GGNNCC 2 cut(s) 207, 531
NspI RCATGY 1 cut(s) 1654
PagI TCATGA 1 cut(s) 934
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciI ACATGT 1 cut(s) 1650
PciSI GCTCTTC 2 cut(s) 2, 1351
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 3 cut(s) 931, 1229, 1406
PflFI GACNNNGTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 5 cut(s) 82, 140, 329, 332, 921
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 105
PscI ACATGT 1 cut(s) 1650
PshBI ATTAAT 1 cut(s) 1599
PspFI CCCAGC 1 cut(s) 522
PspN4I GGNNCC 2 cut(s) 207, 531
PspPI GGNCC 2 cut(s) 178, 585
PstNI CAGNNNCTG 1 cut(s) 324
PsuI RGATCY 3 cut(s) 205, 529, 558
PsyI GACNNNGTC 1 cut(s) 299
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 4 cut(s) 107, 285, 1369, 1612
RsaNI GTAC 4 cut(s) 106, 284, 1368, 1611
RseI CAYNNNNRTG 3 cut(s) 133, 596, 689
SapI GCTCTTC 2 cut(s) 2, 1351
SaqAI TTAA 3 cut(s) 974, 1092, 1599
SatI GCNGC 5 cut(s) 81, 139, 328, 331, 920
Sau3AI GATC 7 cut(s) 125, 205, 529, 547, 558, 1447, 1452
Sau96I GGNCC 2 cut(s) 178, 585
ScaI AGTACT 1 cut(s) 1369
SchI GAGTC 1 cut(s) 646
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 961
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 3 cut(s) 133, 596, 689
Sse9I AATT 5 cut(s) 55, 167, 415, 476, 1596
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 9 cut(s) 138, 238, 328, 565, 643, 754, 919, 958, 1491
SspI AATATT 1 cut(s) 1236
SspMI CTAG 1 cut(s) 1371
StuI AGGCCT 1 cut(s) 45
TaaI ACNGT 1 cut(s) 1508
TaiI ACGT 1 cut(s) 107
TaqI TCGA 4 cut(s) 48, 279, 450, 672
TasI AATT 5 cut(s) 55, 167, 415, 476, 1596
TatI WGTACW 1 cut(s) 1367
TauI GCSGC 3 cut(s) 141, 330, 922
TfiI GAWTC 3 cut(s) 931, 1229, 1406
Tru1I TTAA 3 cut(s) 974, 1092, 1599
Tru9I TTAA 3 cut(s) 974, 1092, 1599
TscAI CASTG 2 cut(s) 166, 929
TseI GCWGC 2 cut(s) 80, 330
TspDTI ATGAA 5 cut(s) 614, 1026, 1415, 1478, 1657
TspRI CASTG 2 cut(s) 166, 929
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1599
XapI RAATTY 2 cut(s) 167, 415
XceI RCATGY 1 cut(s) 1654
XmiI GTMKAC 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 1 cut(s) 1371
ZrmI AGTACT 1 cut(s) 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.