Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015432

Physical Location & Seq

Genomic Coordinates Forward (+)

1067341 .. 1070177

Gene Structure 2837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGAAGTGTGGCTTGACCATGGCAGCTTCCAAGATGTTAATGGCTTCCTTTACCGCCTTCCGCCCTCTAACTTGCGCTGCCTCTGCCTCCTATCCTGCGCGCCTGGCTCCACACCCGCCGGACCTGATCAAGTGGGTCCGTCGGGAAGGAGGGTTCGTGCACGAGGCCGTGAAGATAGCTCAAGATAGTTCATTTGGTCTTGGATTGGTGGCTTCTGAGGAAATCCCAAGGGGTTCCGAACTAATTGTTCTTCCGGAGCACGTAACGTTGAGATTTGGCTCAATTGAATCGGACGGCGGAGATGGGGTCGACTCTGTTCTCGACGATTTGGCTCGCCTAGTTCCTGAGGAACTATGGGCAATGAAATTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAACTGGATCCTTCTGGTGGCCATACATCAGCAGCCTTCCTGAAACGTTCAATATACCCATCTTCTTCCCCGGTGAGGACATAAAGAATTTGCAGTATGCTCCACTTCTTTATCAGGTGAACAAGAGATGCAGATTTCTTCTTGATTTTGAAAAAGAAGTCAAACGTGCTCTGGAAAATCTGAAATCAAACGATCACCCTTTTGGTGGCCAATCTGTAGATGCATCCTCCCTTGGATGGGCAATGTCAGCAGTTTCGTCTCGGGCATTCCGTTTATATGGTAAAAAGCTTCGAGGTGGGAACTACAATGATATCCCGATGATGCTTCCTCTCATTGATATGTGCAACCATAGTTTCAACCCAAATGCCGCAATAGTTCAGGACCAAGATAATAGGAACATGAAGATGCTAGTAAAGGTTGTAGCAGAAACAGAGATCAAGGAGAAGGATGGTTTAGTACTCAACTATGGATGTTTAAACAATGATCTTTTCCTTTTGGATTATGGATTTGTGATACCTTCAAATCCCTATGATTGTATTGAGCTCAAATATGATGGAGCACTTCTGGATGCTGCAAGTATGGCTGCAGGAGTGTCATCGCCCAACTTCTCTGCACCATCTCCATGGCAGAAAGAAATTTTATGCCAGCTAAAGTTAGATGGGGAAGCTCCGCTTCTTAAGGTATGCTTAGGGGGCTCGGAACTGGTTGAGGGGCGCTTGTTGGCAGCCTTAAGAGTTGTTCTTGCTGATGACATAGAAACAGTTCAGAAGCAAGATTTAAATAAACTTAAATCTATATCAACTGAAGCTCCCCTTGGTATTGCAATTGAAGTAGCTGCTTTTCGCACTGTTATTGCGTTATGTGTGATTGCACTGGGACATTTCCCAACCAAAATCATGGAAGACGAATCCCTGTTGAGTAAAGGTGTTTCAGATTCTACACAGCTGGCTATCCAGTTCAGAATTCAGAAAAAATCGGTGATTATAGACGTGATGAGATCGATCTCACAAGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0003824 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018026 GO:0018027 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0046975 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

472

Amino Acids

51.73

Weight (kDa)

5.58

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	66 - 289	4.1e-06	SET domain
Rubis-subs-bind	PF09273	340 - 459	3.3e-15	Rubisco LSMT substrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24610
fragaria_vesca	FvH4_4g33660
malus_domestica	MD13G1020900.v1.1 MD16G1019300.v1.1
prunus_persica	Prupe.1G332800_v2.0.a1
pyrus_communis	pycom13g01770 pycom16g01730
rosa_chinensis	RchiOBHm_Chr4g0443121
rosa_laevigata	RLG00000005952
rosa_multiflora	Rmu_sc0007968.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383740
rosa_rugosa	Rorug04G0344600
rosa_samantha	Rh4BG410500 Rh4CG426000 Rh4DG405500
rosa_wichuraiana	Rw4G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	100
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	6 cut(s)	54, 61, 116, 297, 765, 1067
AclI	AACGTT	2 cut(s)	266, 443
AclWI	GGATC	2 cut(s)	399, 412
AcoI	YGGCCR	2 cut(s)	416, 604
AcsI	RAATTY	3 cut(s)	484, 1032, 1359
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	1 cut(s)	855
AfiI	CCNNNNNNNGG	5 cut(s)	414, 472, 602, 633, 634
AflII	CTTAAG	2 cut(s)	1073, 1126
AgsI	TTSAA	7 cut(s)	287, 376, 448, 548, 754, 918, 1226
AjiI	CACGTC	1 cut(s)	1387
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	1194, 1226
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
Alw21I	GWGCWC	5 cut(s)	162, 261, 568, 942, 958
Alw26I	GTCTC	1 cut(s)	660
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	399, 412
Ama87I	CYCGRG	1 cut(s)	657
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	3 cut(s)	165, 416, 604
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	7 cut(s)	23, 77, 429, 968, 980, 1121, 1232
ApoI	RAATTY	3 cut(s)	484, 1032, 1359
Asp700I	GAANNNNTTC	1 cut(s)	1158
AspLEI	GCGC	4 cut(s)	77, 100, 102, 1113
AspS9I	GGNCC	3 cut(s)	121, 136, 778
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	4 cut(s)	482, 526, 584, 1387
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	3 cut(s)	121, 136, 778
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	162
BalI	TGGCCA	2 cut(s)	418, 606
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	942, 1094
BauI	CACGAG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	1305
Bbv12I	GWGCWC	5 cut(s)	162, 261, 568, 942, 958
BbvI	GCAGC	7 cut(s)	35, 64, 441, 955, 967, 1133, 1219
BccI	CCATC	7 cut(s)	296, 464, 627, 839, 944, 1021, 1049
BceAI	ACGGC	2 cut(s)	152, 310
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	338, 806
BfmI	CTRYAG	2 cut(s)	612, 981
BfoI	RGCGCY	1 cut(s)	1114
BfrI	CTTAAG	2 cut(s)	1073, 1126
BisI	GCNGC	8 cut(s)	24, 78, 430, 765, 969, 981, 1122, 1233
BlsI	GCNGC	8 cut(s)	25, 79, 431, 766, 970, 982, 1123, 1234
BmcAI	AGTACT	1 cut(s)	855
Bme1390I	CCNGG	2 cut(s)	104, 468
Bme18I	GGWCC	3 cut(s)	121, 136, 778
BmeT110I	CYCGRG	1 cut(s)	657
BmgBI	CACGTC	1 cut(s)	1387
BmgT120I	GGNCC	3 cut(s)	121, 136, 778
BmiI	GGNNCC	4 cut(s)	108, 137, 235, 406
BmrFI	CCNGG	2 cut(s)	104, 468
BmrI	ACTGGG	1 cut(s)	1280
BmsI	GCATC	6 cut(s)	515, 607, 629, 708, 792, 955
BmuI	ACTGGG	1 cut(s)	1280
BpiI	GAAGAC	1 cut(s)	1305
Bpu10I	CCTNAGC	1 cut(s)	1084
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	1397
BsaAI	YACGTR	1 cut(s)	262
BsaJI	CCNNGG	6 cut(s)	18, 227, 466, 628, 1019, 1210
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	6 cut(s)	141, 171, 291, 321, 1189, 1219
Bsc4I	CCNNNNNNNGG	5 cut(s)	414, 472, 602, 633, 634
Bse1I	ACTGG	4 cut(s)	406, 1104, 1275, 1351
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	366, 645
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	104
BseCI	ATCGAT	1 cut(s)	1397
BseDI	CCNNGG	6 cut(s)	18, 227, 466, 628, 1019, 1210
BseGI	GGATG	5 cut(s)	620, 638, 850, 872, 970
BseLI	CCNNNNNNNGG	5 cut(s)	414, 472, 602, 633, 634
BseMI	GCAATG	2 cut(s)	366, 645
BseMII	CTCAG	2 cut(s)	207, 336
BseNI	ACTGG	4 cut(s)	406, 1104, 1275, 1351
BsePI	GCGCGC	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	7 cut(s)	35, 64, 441, 955, 967, 1133, 1219
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	167, 418, 606
BshVI	ATCGAT	1 cut(s)	1397
BsiHKAI	GWGCWC	5 cut(s)	162, 261, 568, 942, 958
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	3 cut(s)	119, 254, 468
BslFI	GGGAC	1 cut(s)	1287
BslI	CCNNNNNNNGG	5 cut(s)	414, 472, 602, 633, 634
BsmAI	GTCTC	1 cut(s)	660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	1287
BsmI	GAATGC	1 cut(s)	662
BsnI	GGCC	3 cut(s)	167, 418, 606
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	6 cut(s)	162, 261, 568, 942, 958, 1094
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
Bsp19I	CCATGG	2 cut(s)	18, 1019
BspACI	CCGC	6 cut(s)	54, 61, 116, 297, 765, 1067
BspANI	GGCC	3 cut(s)	167, 418, 606
BspCNI	CTCAG	2 cut(s)	208, 337
BspDI	ATCGAT	1 cut(s)	1397
BspEI	TCCGGA	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	4 cut(s)	108, 137, 235, 406
BspMAI	CTGCAG	1 cut(s)	985
BspPI	GGATC	2 cut(s)	399, 412
BspTI	CTTAAG	2 cut(s)	1073, 1126
BsrDI	GCAATG	2 cut(s)	366, 645
BsrI	ACTGG	4 cut(s)	406, 1104, 1275, 1351
BssECI	CCNNGG	6 cut(s)	18, 227, 466, 628, 1019, 1210
BssHII	GCGCGC	1 cut(s)	98
BssMI	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	5 cut(s)	18, 227, 628, 1019, 1210
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	1159, 1246
BstAFI	CTTAAG	2 cut(s)	1073, 1126
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	4 cut(s)	100, 334, 1043, 1344
BstDEI	CTNAG	3 cut(s)	216, 345, 1084
BstDSI	CCRYGG	2 cut(s)	18, 1019
BstF5I	GGATG	5 cut(s)	620, 638, 850, 872, 970
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	1114
BstHHI	GCGC	4 cut(s)	77, 100, 102, 1113
BstKTI	GATC	7 cut(s)	129, 407, 592, 834, 883, 1397, 1401
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 104, 644, 977, 1089
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	102, 466
BstSFI	CTRYAG	2 cut(s)	612, 981
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	7 cut(s)	35, 64, 441, 955, 967, 1133, 1219
BstV2I	GAAGAC	1 cut(s)	1305
BstX2I	RGATCY	1 cut(s)	404
BstXI	CCANNNNNNTGG	2 cut(s)	1020, 1294
BstYI	RGATCY	1 cut(s)	404
Bsu15I	ATCGAT	1 cut(s)	1397
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	167, 418, 606
BsuTUI	ATCGAT	1 cut(s)	1397
BtgI	CCRYGG	2 cut(s)	18, 1019
BtgZI	GCGATG	1 cut(s)	978
BtrI	CACGTC	1 cut(s)	1387
BtsCI	GGATG	5 cut(s)	620, 638, 850, 872, 970
BtsIMutI	CAGTG	2 cut(s)	1242, 1268
Cac8I	GCNNGC	4 cut(s)	100, 334, 1043, 1344
CfoI	GCGC	4 cut(s)	77, 100, 102, 1113
Cfr13I	GGNCC	3 cut(s)	121, 136, 778
ClaI	ATCGAT	1 cut(s)	1397
Csp6I	GTAC	1 cut(s)	854
CviAII	CATG	4 cut(s)	19, 796, 1020, 1294
CviQI	GTAC	1 cut(s)	854
DdeI	CTNAG	3 cut(s)	216, 345, 1084
DpnI	GATC	7 cut(s)	128, 406, 591, 833, 882, 1396, 1400
DpnII	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
DraI	TTTAAA	2 cut(s)	873, 1176
EaeI	YGGCCR	2 cut(s)	416, 604
EciI	GGCGGA	2 cut(s)	50, 312
Ecl136II	GAGCTC	1 cut(s)	940
Eco130I	CCWWGG	5 cut(s)	18, 227, 628, 1019, 1210
Eco24I	GRGCYC	2 cut(s)	942, 1094
Eco32I	GATATC	1 cut(s)	709
Eco47I	GGWCC	3 cut(s)	121, 136, 778
Eco53kI	GAGCTC	1 cut(s)	940
Eco57I	CTGAAG	1 cut(s)	1221
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	657
EcoICRI	GAGCTC	1 cut(s)	940
EcoRI	GAATTC	1 cut(s)	1359
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	709
EcoT14I	CCWWGG	5 cut(s)	18, 227, 628, 1019, 1210
EcoT22I	ATGCAT	1 cut(s)	622
EcoT38I	GRGCYC	2 cut(s)	942, 1094
ErhI	CCWWGG	5 cut(s)	18, 227, 628, 1019, 1210
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	4 cut(s)	22, 799, 1023, 1297
FalI	AAGNNNNNCTT	7 cut(s)	28, 1053, 1085, 1067, 1099, 1194, 1226
FaqI	GGGAC	1 cut(s)	1287
FatI	CATG	4 cut(s)	18, 795, 1019, 1293
FauI	CCCGC	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	8 cut(s)	24, 78, 430, 765, 969, 981, 1122, 1233
FokI	GGATG	5 cut(s)	607, 645, 857, 879, 977
FriOI	GRGCYC	2 cut(s)	942, 1094
Fsp4HI	GCNGC	8 cut(s)	24, 78, 430, 765, 969, 981, 1122, 1233
FspBI	CTAG	2 cut(s)	338, 806
GlaI	GCGC	4 cut(s)	76, 99, 101, 1112
GluI	GCNGC	8 cut(s)	24, 78, 430, 765, 969, 981, 1122, 1233
HaeII	RGCGCY	1 cut(s)	1114
HaeIII	GGCC	3 cut(s)	167, 418, 606
HapII	CCGG	3 cut(s)	119, 254, 468
HhaI	GCGC	4 cut(s)	77, 100, 102, 1113
Hin1II	CATG	4 cut(s)	22, 799, 1023, 1297
Hin6I	GCGC	4 cut(s)	75, 98, 100, 1111
HinP1I	GCGC	4 cut(s)	75, 98, 100, 1111
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	377, 683
HinfI	GANTC	4 cut(s)	287, 311, 1304, 1331
HpaII	CCGG	3 cut(s)	119, 254, 468
HphI	GGTGA	4 cut(s)	482, 526, 584, 1387
Hpy166II	GTNNAC	3 cut(s)	160, 310, 517
Hpy188I	TCNGA	9 cut(s)	217, 238, 292, 579, 1096, 1164, 1330, 1358, 1365
Hpy8I	GTNNAC	3 cut(s)	160, 310, 517
Hpy99I	CGWCG	2 cut(s)	144, 326
HpyAV	CCTTC	6 cut(s)	67, 140, 418, 443, 835, 924
HpyCH4III	ACNGT	2 cut(s)	1159, 1246
HpyCH4IV	ACGT	5 cut(s)	261, 266, 443, 562, 1386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 104, 644, 977, 1089
HpyF3I	CTNAG	3 cut(s)	216, 345, 1084
HpySE526I	ACGT	5 cut(s)	261, 266, 443, 562, 1386
Hsp92II	CATG	4 cut(s)	22, 799, 1023, 1297
HspAI	GCGC	4 cut(s)	75, 98, 100, 1111
Kpn2I	TCCGGA	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
LmnI	GCTCC	6 cut(s)	112, 256, 502, 953, 1069, 1210
Lsp1109I	GCAGC	7 cut(s)	35, 64, 441, 955, 967, 1133, 1219
LweI	GCATC	6 cut(s)	515, 607, 629, 708, 792, 955
MaeI	CTAG	2 cut(s)	338, 806
MaeII	ACGT	5 cut(s)	261, 266, 443, 562, 1386
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	7 cut(s)	128, 406, 591, 833, 882, 1396, 1400
MboI	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
MboII	GAAGA	7 cut(s)	184, 242, 451, 454, 527, 811, 1310
MfeI	CAATTG	2 cut(s)	282, 1221
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	6 cut(s)	162, 261, 568, 942, 958, 1094
MlsI	TGGCCA	2 cut(s)	418, 606
MluCI	AATT	7 cut(s)	243, 282, 365, 484, 1032, 1221, 1359
MluNI	TGGCCA	2 cut(s)	418, 606
MlyI	GAGTC	1 cut(s)	305
Mox20I	TGGCCA	2 cut(s)	418, 606
Mph1103I	ATGCAT	1 cut(s)	622
MroI	TCCGGA	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	1158
MscI	TGGCCA	2 cut(s)	418, 606
MseI	TTAA	6 cut(s)	38, 872, 1074, 1127, 1175, 1185
MslI	CAYNNNNRTG	3 cut(s)	734, 800, 1018
Msp20I	TGGCCA	2 cut(s)	418, 606
MspA1I	CMGCKG	1 cut(s)	1342
MspCI	CTTAAG	2 cut(s)	1073, 1126
MspI	CCGG	3 cut(s)	119, 254, 468
MspR9I	CCNGG	2 cut(s)	104, 468
MssI	GTTTAAAC	1 cut(s)	873
MunI	CAATTG	2 cut(s)	282, 1221
Mva1269I	GAATGC	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	5 cut(s)	83, 104, 644, 977, 1089
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	2 cut(s)	18, 1019
NdeII	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
NlaIII	CATG	4 cut(s)	22, 799, 1023, 1297
NlaIV	GGNNCC	4 cut(s)	108, 137, 235, 406
NsiI	ATGCAT	1 cut(s)	622
PauI	GCGCGC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	664
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	1158
PfeI	GAWTC	3 cut(s)	287, 1304, 1331
PkrI	GCNGC	8 cut(s)	25, 79, 431, 766, 970, 982, 1123, 1234
PleI	GAGTC	1 cut(s)	305
PmeI	GTTTAAAC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	305
Ppu21I	YACGTR	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	942
Psp1406I	AACGTT	2 cut(s)	266, 443
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	4 cut(s)	108, 137, 235, 406
PspPI	GGNCC	3 cut(s)	121, 136, 778
PstI	CTGCAG	1 cut(s)	985
PsuI	RGATCY	1 cut(s)	404
PteI	GCGCGC	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	1342
RsaI	GTAC	1 cut(s)	855
RsaNI	GTAC	1 cut(s)	854
RseI	CAYNNNNRTG	3 cut(s)	734, 800, 1018
SacI	GAGCTC	1 cut(s)	942
SalI	GTCGAC	1 cut(s)	308
SaqAI	TTAA	6 cut(s)	38, 872, 1074, 1127, 1175, 1185
SatI	GCNGC	8 cut(s)	24, 78, 430, 765, 969, 981, 1122, 1233
Sau3AI	GATC	7 cut(s)	126, 404, 589, 831, 880, 1394, 1398
Sau96I	GGNCC	3 cut(s)	121, 136, 778
ScaI	AGTACT	1 cut(s)	855
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	104, 468
SduI	GDGCHC	6 cut(s)	162, 261, 568, 942, 958, 1094
SfaNI	GCATC	6 cut(s)	515, 607, 629, 708, 792, 955
SfcI	CTRYAG	2 cut(s)	612, 981
SinI	GGWCC	3 cut(s)	121, 136, 778
SmiI	ATTTAAAT	1 cut(s)	1176
SmiMI	CAYNNNNRTG	3 cut(s)	734, 800, 1018
SmlI	CTYRAG	3 cut(s)	180, 1073, 1126
SmoI	CTYRAG	3 cut(s)	180, 1073, 1126
Sse9I	AATT	7 cut(s)	243, 282, 365, 484, 1032, 1221, 1359
SsiI	CCGC	6 cut(s)	54, 61, 116, 297, 765, 1067
SspMI	CTAG	2 cut(s)	338, 806
SstI	GAGCTC	1 cut(s)	942
StyD4I	CCNGG	2 cut(s)	102, 466
StyI	CCWWGG	5 cut(s)	18, 227, 628, 1019, 1210
SwaI	ATTTAAAT	1 cut(s)	1176
TaaI	ACNGT	2 cut(s)	1159, 1246
TaiI	ACGT	5 cut(s)	264, 269, 446, 565, 1389
TaqI	TCGA	4 cut(s)	309, 321, 688, 1397
TasI	AATT	7 cut(s)	243, 282, 365, 484, 1032, 1221, 1359
TatI	WGTACW	1 cut(s)	853
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	3 cut(s)	287, 1304, 1331
Tru1I	TTAA	6 cut(s)	38, 872, 1074, 1127, 1175, 1185
Tru9I	TTAA	6 cut(s)	38, 872, 1074, 1127, 1175, 1185
TscAI	CASTG	2 cut(s)	1249, 1275
TseI	GCWGC	7 cut(s)	23, 77, 429, 968, 980, 1121, 1232
TspDTI	ATGAA	4 cut(s)	17, 180, 377, 812
TspGWI	ACGGA	2 cut(s)	128, 656
TspRI	CASTG	2 cut(s)	1249, 1275
Vha464I	CTTAAG	2 cut(s)	1073, 1126
VneI	GTGCAC	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	121, 136, 778
XapI	RAATTY	3 cut(s)	484, 1032, 1359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	1158
XspI	CTAG	2 cut(s)	338, 806
ZrmI	AGTACT	1 cut(s)	855
Zsp2I	ATGCAT	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.