Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015892

Physical Location & Seq

Genomic Coordinates Reverse (-)

1160686 .. 1161708

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGGGAGCGGAGCTGGAGCTGGAGAGGCGGAGCAAGTTCCTCAGCAGTTTGATACAGAAGAAGAAATCTGTGGAGGAACAAGATCACCGTGATAGCCTCAATGTCCGAGTCAGGGCCTCTGACATGCCCATCACTCTGCAAAACCGCGCCTTTCGGTCTGCGCGGGATCACCTCGACGCCATGCCCGGGAAGCTCGACAGCAAACGCCTCGCTCTCGCACTTAAAAAGGATTTCGATTCCTCGTATGGTCCGGCTTGGCACTGCATTGTTGGAACTAGCTTCGGTTCGTACGTGACACATTCCACTGGCGGCTTCTTGTATTTTTCAATCGACAAGGTTTACGTTCTTCTCTTCAAAACTGCCGTCGAGCCCTTGGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

8.71

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	36 - 121	6.9e-28	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23220
fragaria_vesca	FvH4_4g33881
malus_domestica	MD13G1030400.v1.1 MD16G1021100.v1.1
pyrus_communis	pycom16g01890
rosa_chinensis	RchiOBHm_Chr4g0443401
rosa_laevigata	RLG00000005931
rosa_multiflora	Rmu_ssc0000122.1_g000015
rosa_roxburghii	Rroxscaffold_5G00383960
rosa_rugosa	Rorug04G0346000 Rorug04G0346000
rosa_samantha	Rh4AG401400 Rh4CG428500 Rh4DG408600
rosa_wichuraiana	Rw4G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	11
AccII	CGCG	2 cut(s)	150, 166
AciI	CCGC	5 cut(s)	11, 31, 148, 166, 312
AclWI	GGATC	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	115, 189
AgsI	TTSAA	2 cut(s)	330, 358
AluBI	AGCT	4 cut(s)	16, 22, 196, 282
AluI	AGCT	4 cut(s)	16, 22, 196, 282
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	117
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
AspLEI	GCGC	2 cut(s)	152, 166
AspS9I	GGNCC	3 cut(s)	117, 251, 379
AsuC2I	CCSGG	2 cut(s)	189, 190
AsuHPI	GGTGA	2 cut(s)	80, 164
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	251, 379
BanII	GRGCYC	1 cut(s)	375
BbvCI	CCTCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BcnI	CCSGG	2 cut(s)	189, 190
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	189, 190
Bme18I	GGWCC	2 cut(s)	251, 379
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	117, 251, 379
BmrFI	CCNGG	2 cut(s)	189, 190
BpmI	CTGGAG	2 cut(s)	38, 44
Bpu10I	CCTNAGC	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	189, 190
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	188, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 189
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	188, 375
BseLI	CCNNNNNNNGG	2 cut(s)	115, 189
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	313
Bsh1236I	CGCG	2 cut(s)	150, 166
BshFI	GGCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	189, 254
BsiWI	CGTACG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	115, 189
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	85, 169
BspACI	CCGC	5 cut(s)	11, 31, 148, 166, 312
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	2 cut(s)	150, 166
BspPI	GGATC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	188, 375
BssMI	GATC	2 cut(s)	85, 169
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	150, 166
BstHHI	GCGC	2 cut(s)	152, 166
BstKTI	GATC	2 cut(s)	88, 172
BstMBI	GATC	2 cut(s)	85, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 193
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	187, 188
BstUI	CGCG	2 cut(s)	150, 166
BsuRI	GGCC	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 306
CfoI	GCGC	2 cut(s)	152, 166
Cfr13I	GGNCC	3 cut(s)	117, 251, 379
Cfr9I	CCCGGG	1 cut(s)	188
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	2 cut(s)	127, 184
CviJI	RGCY	9 cut(s)	16, 22, 99, 119, 196, 257, 282, 315, 373
CviKI_1	RGCY	9 cut(s)	16, 22, 99, 119, 196, 257, 282, 315, 373
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	87, 171
DpnII	GATC	2 cut(s)	85, 169
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	251, 379
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	130, 187
FaiI	YATR	3 cut(s)	128, 185, 249
FatI	CATG	2 cut(s)	126, 183
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	151, 165
GluI	GCNGC	1 cut(s)	313
GsuI	CTGGAG	2 cut(s)	38, 44
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	189, 254
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	2 cut(s)	152, 166
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	130, 187
Hin6I	GCGC	2 cut(s)	150, 164
HinP1I	GCGC	2 cut(s)	150, 164
HinfI	GANTC	2 cut(s)	111, 239
HpaII	CCGG	2 cut(s)	189, 254
HphI	GGTGA	2 cut(s)	80, 164
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	110, 124
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	182, 371
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	2 cut(s)	294, 345
HpyCH4V	TGCA	2 cut(s)	142, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 193
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	2 cut(s)	294, 345
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	130, 187
HspAI	GCGC	2 cut(s)	150, 164
Kzo9I	GATC	2 cut(s)	85, 169
LmnI	GCTCC	4 cut(s)	8, 13, 19, 33
LpnPI	CCDG	6 cut(s)	2, 8, 100, 202, 267, 294
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	294, 345
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	87, 171
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	85, 169
MboII	GAAGA	4 cut(s)	73, 76, 341, 346
MhlI	GDGCHC	1 cut(s)	375
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	21, 53, 70, 110, 130, 185, 221, 253
MseI	TTAA	1 cut(s)	225
MspI	CCGG	2 cut(s)	189, 254
MspR9I	CCNGG	2 cut(s)	189, 190
MvnI	CGCG	2 cut(s)	150, 166
MwoI	GCNNNNNNNGC	2 cut(s)	28, 193
NciI	CCSGG	2 cut(s)	189, 190
NdeII	GATC	2 cut(s)	85, 169
NlaIII	CATG	2 cut(s)	130, 187
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	239
Pfl23II	CGTACG	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	295
PspLI	CGTACG	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	117, 251, 379
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	85, 169
Sau96I	GGNCC	3 cut(s)	117, 251, 379
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	189, 190
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	8 cut(s)	18, 24, 177, 198, 284, 297, 342, 348
SinI	GGWCC	2 cut(s)	251, 379
SmaI	CCCGGG	1 cut(s)	190
SsiI	CCGC	5 cut(s)	11, 31, 148, 166, 312
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	187, 188
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	2 cut(s)	297, 348
TaqI	TCGA	5 cut(s)	177, 198, 237, 333, 369
TaqII	GACCGA	1 cut(s)	147
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	269, 313
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	2 cut(s)	269, 313
VpaK11BI	GGWCC	2 cut(s)	251, 379
XceI	RCATGY	1 cut(s)	130
XmaI	CCCGGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.