U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23180 AT1G23180 |
| fragaria_vesca | FvH4_4g34070 |
| malus_domestica | MD16G1022800.v1.1 |
| prunus_persica | Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 |
| pyrus_communis | pycom16g02010 |
| rosa_chinensis | RchiOBHm_Chr4g0443581 |
| rosa_laevigata | RLG00000005913 |
| rosa_multiflora | Rmu_sc0001118.1_g000017 Rmu_sc0026347.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00384130 |
| rosa_samantha | Rh4AG403200 Rh4AG405100 Rh4BG416100 Rh4CG430600 Rh4DG410500 Rh4DG411700 |
| rosa_wichuraiana | Rw4G034780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 990, 1059, 2451 |
| AarI | CACCTGC | 1 cut(s) | 809 |
| Acc36I | ACCTGC | 1 cut(s) | 809 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1655 |
| AciI | CCGC | 7 cut(s) | 196, 231, 234, 239, 242, 1451, 1895 |
| AclWI | GGATC | 6 cut(s) | 874, 1520, 1604, 1610, 1666, 1678 |
| AcsI | RAATTY | 2 cut(s) | 775, 933 |
| AcuI | CTGAAG | 3 cut(s) | 982, 2141, 2355 |
| AdeI | CACNNNGTG | 1 cut(s) | 566 |
| AfaI | GTAC | 5 cut(s) | 298, 643, 926, 1413, 1446 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 128, 211, 974, 1655, 1876, 2514 |
| AflII | CTTAAG | 1 cut(s) | 847 |
| AflIII | ACRYGT | 1 cut(s) | 1105 |
| AgeI | ACCGGT | 1 cut(s) | 1238 |
| AjnI | CCWGG | 2 cut(s) | 442, 1070 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1080, 1112 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 656, 688 |
| Alw21I | GWGCWC | 1 cut(s) | 1465 |
| Alw26I | GTCTC | 4 cut(s) | 53, 1790, 2237, 2248 |
| AlwI | GGATC | 6 cut(s) | 874, 1520, 1604, 1610, 1666, 1678 |
| Ama87I | CYCGRG | 3 cut(s) | 341, 1847, 2355 |
| AoxI | GGCC | 6 cut(s) | 6, 134, 511, 1001, 1019, 1194 |
| ApoI | RAATTY | 2 cut(s) | 775, 933 |
| AsiGI | ACCGGT | 1 cut(s) | 1238 |
| AspS9I | GGNCC | 5 cut(s) | 1194, 1646, 1688, 2192, 2212 |
| AsuC2I | CCSGG | 4 cut(s) | 589, 1005, 1600, 2035 |
| AsuHPI | GGTGA | 7 cut(s) | 46, 320, 634, 757, 2089, 2123, 2182 |
| AvaI | CYCGRG | 3 cut(s) | 341, 1847, 2355 |
| AvaII | GGWCC | 4 cut(s) | 1646, 1688, 2192, 2212 |
| AxyI | CCTNAGG | 1 cut(s) | 618 |
| BaeGI | GKGCMC | 1 cut(s) | 2557 |
| BauI | CACGAG | 1 cut(s) | 2240 |
| BbsI | GAAGAC | 1 cut(s) | 1314 |
| Bbv12I | GWGCWC | 1 cut(s) | 1465 |
| BbvCI | CCTCAGC | 2 cut(s) | 1512, 2567 |
| BceAI | ACGGC | 4 cut(s) | 244, 691, 1424, 2408 |
| BciT130I | CCWGG | 2 cut(s) | 444, 1072 |
| BcnI | CCSGG | 4 cut(s) | 589, 1005, 1600, 2035 |
| BcoDI | GTCTC | 4 cut(s) | 53, 1790, 2237, 2248 |
| BfaI | CTAG | 7 cut(s) | 1023, 1281, 1421, 1466, 1683, 2201, 2288 |
| BfmI | CTRYAG | 3 cut(s) | 928, 1332, 2304 |
| BfrI | CTTAAG | 1 cut(s) | 847 |
| BfuAI | ACCTGC | 1 cut(s) | 809 |
| BglII | AGATCT | 1 cut(s) | 1557 |
| BmcAI | AGTACT | 2 cut(s) | 298, 926 |
| Bme1390I | CCNGG | 6 cut(s) | 444, 589, 1005, 1072, 1600, 2035 |
| Bme18I | GGWCC | 4 cut(s) | 1646, 1688, 2192, 2212 |
| BmeT110I | CYCGRG | 3 cut(s) | 341, 1847, 2355 |
| BmgT120I | GGNCC | 5 cut(s) | 1194, 1646, 1688, 2192, 2212 |
| BmiI | GGNNCC | 6 cut(s) | 960, 1195, 1689, 1699, 2194, 2214 |
| BmrFI | CCNGG | 6 cut(s) | 444, 589, 1005, 1072, 1600, 2035 |
| BmsI | GCATC | 6 cut(s) | 235, 327, 1339, 1361, 1666, 2039 |
| BpiI | GAAGAC | 1 cut(s) | 1314 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 286, 318 |
| BpmI | CTGGAG | 2 cut(s) | 1734, 2517 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1512, 2567 |
| BpuMI | CCSGG | 4 cut(s) | 589, 1005, 1600, 2035 |
| BsaI | GGTCTC | 1 cut(s) | 2237 |
| BsaJI | CCNNGG | 6 cut(s) | 9, 723, 1096, 1262, 1701, 2371 |
| BsaWI | WCCGGW | 1 cut(s) | 1238 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2404, 2434 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 128, 211, 974, 1655, 1876, 2514 |
| Bse118I | RCCGGY | 1 cut(s) | 1238 |
| Bse1I | ACTGG | 5 cut(s) | 486, 1209, 1452, 1498, 1717 |
| Bse21I | CCTNAGG | 1 cut(s) | 618 |
| Bse3DI | GCAATG | 3 cut(s) | 99, 1492, 2361 |
| BseBI | CCWGG | 2 cut(s) | 444, 1072 |
| BseDI | CCNNGG | 6 cut(s) | 9, 723, 1096, 1262, 1701, 2371 |
| BseGI | GGATG | 9 cut(s) | 250, 269, 342, 670, 733, 925, 1681, 2030, 2476 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 128, 211, 974, 1655, 1876, 2514 |
| BseMI | GCAATG | 3 cut(s) | 99, 1492, 2361 |
| BseMII | CTCAG | 6 cut(s) | 464, 609, 1503, 1620, 2447, 2558 |
| BseNI | ACTGG | 5 cut(s) | 486, 1209, 1452, 1498, 1717 |
| BseRI | GAGGAG | 3 cut(s) | 41, 386, 2530 |
| BseSI | GKGCMC | 1 cut(s) | 2557 |
| BseYI | CCCAGC | 1 cut(s) | 1391 |
| Bsh1285I | CGRYCG | 1 cut(s) | 605 |
| BshFI | GGCC | 6 cut(s) | 8, 136, 513, 1003, 1021, 1196 |
| BshTI | ACCGGT | 1 cut(s) | 1238 |
| BsiEI | CGRYCG | 1 cut(s) | 605 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1465 |
| BsiHKCI | CYCGRG | 3 cut(s) | 341, 1847, 2355 |
| BsiSI | CCGG | 7 cut(s) | 588, 759, 1004, 1239, 1600, 2035, 2480 |
| BslFI | GGGAC | 2 cut(s) | 950, 2178 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 128, 211, 974, 1655, 1876, 2514 |
| BsmAI | GTCTC | 4 cut(s) | 53, 1790, 2237, 2248 |
| BsmFI | GGGAC | 2 cut(s) | 950, 2178 |
| BsmI | GAATGC | 2 cut(s) | 1153, 1379 |
| BsnI | GGCC | 6 cut(s) | 8, 136, 513, 1003, 1021, 1196 |
| Bso31I | GGTCTC | 1 cut(s) | 2237 |
| BsoBI | CYCGRG | 3 cut(s) | 341, 1847, 2355 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1465, 2557 |
| Bsp143I | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| Bsp19I | CCATGG | 1 cut(s) | 1262 |
| BspACI | CCGC | 7 cut(s) | 196, 231, 234, 239, 242, 1451, 1895 |
| BspANI | GGCC | 6 cut(s) | 8, 136, 513, 1003, 1021, 1196 |
| BspCNI | CTCAG | 6 cut(s) | 465, 610, 1504, 1619, 2448, 2559 |
| BspLI | GGNNCC | 6 cut(s) | 960, 1195, 1689, 1699, 2194, 2214 |
| BspMAI | CTGCAG | 2 cut(s) | 1336, 2308 |
| BspMI | ACCTGC | 1 cut(s) | 809 |
| BspPI | GGATC | 6 cut(s) | 874, 1520, 1604, 1610, 1666, 1678 |
| BspTI | CTTAAG | 1 cut(s) | 847 |
| BspTNI | GGTCTC | 1 cut(s) | 2237 |
| BsrDI | GCAATG | 3 cut(s) | 99, 1492, 2361 |
| BsrFI | RCCGGY | 1 cut(s) | 1238 |
| BsrI | ACTGG | 5 cut(s) | 486, 1209, 1452, 1498, 1717 |
| BssAI | RCCGGY | 1 cut(s) | 1238 |
| BssECI | CCNNGG | 6 cut(s) | 9, 723, 1096, 1262, 1701, 2371 |
| BssMI | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| BssSI | CACGAG | 1 cut(s) | 2240 |
| BssT1I | CCWWGG | 3 cut(s) | 1096, 1262, 2371 |
| Bst2BI | CACGAG | 1 cut(s) | 2240 |
| Bst2UI | CCWGG | 2 cut(s) | 444, 1072 |
| Bst6I | CTCTTC | 1 cut(s) | 573 |
| BstAFI | CTTAAG | 1 cut(s) | 847 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 896, 1331 |
| BstC8I | GCNNGC | 3 cut(s) | 511, 1786, 2434 |
| BstDEI | CTNAG | 7 cut(s) | 473, 618, 1512, 1606, 2061, 2456, 2567 |
| BstDSI | CCRYGG | 3 cut(s) | 723, 1262, 1701 |
| BstF5I | GGATG | 9 cut(s) | 250, 269, 342, 670, 733, 925, 1681, 2030, 2476 |
| BstKTI | GATC | 8 cut(s) | 479, 869, 1528, 1560, 1605, 1612, 1661, 1673 |
| BstMAI | GTCTC | 4 cut(s) | 53, 1790, 2237, 2248 |
| BstMBI | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| BstMCI | CGRYCG | 1 cut(s) | 605 |
| BstNI | CCWGG | 2 cut(s) | 444, 1072 |
| BstNSI | RCATGY | 2 cut(s) | 1109, 2436 |
| BstSCI | CCNGG | 6 cut(s) | 442, 587, 1003, 1070, 1598, 2033 |
| BstSFI | CTRYAG | 3 cut(s) | 928, 1332, 2304 |
| BstSLI | GKGCMC | 1 cut(s) | 2557 |
| BstV2I | GAAGAC | 1 cut(s) | 1314 |
| BstX2I | RGATCY | 5 cut(s) | 866, 1525, 1557, 1602, 1609 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1204 |
| BstYI | RGATCY | 5 cut(s) | 866, 1525, 1557, 1602, 1609 |
| Bsu36I | CCTNAGG | 1 cut(s) | 618 |
| BsuRI | GGCC | 6 cut(s) | 8, 136, 513, 1003, 1021, 1196 |
| BtgI | CCRYGG | 3 cut(s) | 723, 1262, 1701 |
| BtsCI | GGATG | 9 cut(s) | 250, 269, 342, 670, 733, 925, 1681, 2030, 2476 |
| BtsIMutI | CAGTG | 4 cut(s) | 223, 700, 2473, 2549 |
| BveI | ACCTGC | 1 cut(s) | 809 |
| Cac8I | GCNNGC | 3 cut(s) | 511, 1786, 2434 |
| Cfr10I | RCCGGY | 1 cut(s) | 1238 |
| Cfr13I | GGNCC | 5 cut(s) | 1194, 1646, 1688, 2192, 2212 |
| Csp6I | GTAC | 5 cut(s) | 297, 642, 925, 1412, 1445 |
| CspAI | ACCGGT | 1 cut(s) | 1238 |
| CviQI | GTAC | 5 cut(s) | 297, 642, 925, 1412, 1445 |
| DdeI | CTNAG | 7 cut(s) | 473, 618, 1512, 1606, 2061, 2456, 2567 |
| DpnI | GATC | 8 cut(s) | 478, 868, 1527, 1559, 1604, 1611, 1660, 1672 |
| DpnII | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| DraI | TTTAAA | 2 cut(s) | 265, 1545 |
| DraIII | CACNNNGTG | 1 cut(s) | 566 |
| Eam1104I | CTCTTC | 1 cut(s) | 573 |
| EarI | CTCTTC | 1 cut(s) | 573 |
| EciI | GGCGGA | 1 cut(s) | 257 |
| Eco130I | CCWWGG | 3 cut(s) | 1096, 1262, 2371 |
| Eco31I | GGTCTC | 1 cut(s) | 2237 |
| Eco32I | GATATC | 2 cut(s) | 528, 2116 |
| Eco47I | GGWCC | 4 cut(s) | 1646, 1688, 2192, 2212 |
| Eco57I | CTGAAG | 3 cut(s) | 982, 2141, 2355 |
| Eco81I | CCTNAGG | 1 cut(s) | 618 |
| Eco88I | CYCGRG | 3 cut(s) | 341, 1847, 2355 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1688, 2212 |
| EcoRI | GAATTC | 1 cut(s) | 933 |
| EcoRII | CCWGG | 2 cut(s) | 442, 1070 |
| EcoRV | GATATC | 2 cut(s) | 528, 2116 |
| EcoT14I | CCWWGG | 3 cut(s) | 1096, 1262, 2371 |
| EcoT22I | ATGCAT | 1 cut(s) | 1354 |
| ErhI | CCWWGG | 3 cut(s) | 1096, 1262, 2371 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 883, 915 |
| FaqI | GGGAC | 2 cut(s) | 950, 2178 |
| FauI | CCCGC | 2 cut(s) | 203, 1888 |
| FokI | GGATG | 9 cut(s) | 256, 257, 349, 677, 740, 932, 1688, 2017, 2463 |
| FspBI | CTAG | 7 cut(s) | 1023, 1281, 1421, 1466, 1683, 2201, 2288 |
| GsaI | CCCAGC | 1 cut(s) | 1395 |
| GsuI | CTGGAG | 2 cut(s) | 1734, 2517 |
| HaeIII | GGCC | 6 cut(s) | 8, 136, 513, 1003, 1021, 1196 |
| HapII | CCGG | 7 cut(s) | 588, 759, 1004, 1239, 1600, 2035, 2480 |
| HincII | GTYRAC | 1 cut(s) | 30 |
| HindII | GTYRAC | 1 cut(s) | 30 |
| HindIII | AAGCTT | 1 cut(s) | 1403 |
| HpaI | GTTAAC | 1 cut(s) | 30 |
| HpaII | CCGG | 7 cut(s) | 588, 759, 1004, 1239, 1600, 2035, 2480 |
| HphI | GGTGA | 7 cut(s) | 46, 320, 634, 757, 2089, 2123, 2182 |
| Hpy166II | GTNNAC | 4 cut(s) | 30, 466, 1028, 1244 |
| Hpy188III | TCNNGA | 7 cut(s) | 391, 617, 1421, 1570, 1940, 2119, 2288 |
| Hpy8I | GTNNAC | 4 cut(s) | 30, 466, 1028, 1244 |
| Hpy99I | CGWCG | 3 cut(s) | 28, 230, 1445 |
| HpyAV | CCTTC | 8 cut(s) | 126, 619, 742, 857, 944, 1006, 2147, 2330 |
| HpyCH4IV | ACGT | 2 cut(s) | 738, 858 |
| HpyF3I | CTNAG | 7 cut(s) | 473, 618, 1512, 1606, 2061, 2456, 2567 |
| HpySE526I | ACGT | 2 cut(s) | 738, 858 |
| KspAI | GTTAAC | 1 cut(s) | 30 |
| Kzo9I | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| LmnI | GCTCC | 3 cut(s) | 569, 2263, 2498 |
| LweI | GCATC | 6 cut(s) | 235, 327, 1339, 1361, 1666, 2039 |
| MaeI | CTAG | 7 cut(s) | 1023, 1281, 1421, 1466, 1683, 2201, 2288 |
| MaeII | ACGT | 2 cut(s) | 738, 858 |
| MaeIII | GTNAC | 5 cut(s) | 708, 788, 797, 1101, 2230 |
| MalI | GATC | 8 cut(s) | 478, 868, 1527, 1559, 1604, 1611, 1660, 1672 |
| MboI | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| MboII | GAAGA | 8 cut(s) | 136, 139, 590, 1220, 1319, 1409, 2015, 2303 |
| MfeI | CAATTG | 2 cut(s) | 573, 1341 |
| MflI | RGATCY | 5 cut(s) | 866, 1525, 1557, 1602, 1609 |
| MhlI | GDGCHC | 2 cut(s) | 1465, 2557 |
| MlyI | GAGTC | 6 cut(s) | 491, 1322, 1763, 2051, 2250, 2566 |
| MmeI | TCCRAC | 2 cut(s) | 1138, 1566 |
| Mph1103I | ATGCAT | 1 cut(s) | 1354 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1110, 1571, 1706 |
| MspA1I | CMGCKG | 2 cut(s) | 983, 1895 |
| MspCI | CTTAAG | 1 cut(s) | 847 |
| MspI | CCGG | 7 cut(s) | 588, 759, 1004, 1239, 1600, 2035, 2480 |
| MspR9I | CCNGG | 6 cut(s) | 444, 589, 1005, 1072, 1600, 2035 |
| MssI | GTTTAAAC | 1 cut(s) | 265 |
| MunI | CAATTG | 2 cut(s) | 573, 1341 |
| Mva1269I | GAATGC | 2 cut(s) | 1153, 1379 |
| MvaI | CCWGG | 2 cut(s) | 444, 1072 |
| NciI | CCSGG | 4 cut(s) | 589, 1005, 1600, 2035 |
| NcoI | CCATGG | 1 cut(s) | 1262 |
| NdeII | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| NlaIV | GGNNCC | 6 cut(s) | 960, 1195, 1689, 1699, 2194, 2214 |
| NmuCI | GTSAC | 2 cut(s) | 788, 797 |
| NsiI | ATGCAT | 1 cut(s) | 1354 |
| NspI | RCATGY | 2 cut(s) | 1109, 2436 |
| PaeI | GCATGC | 1 cut(s) | 2436 |
| PaeR7I | CTCGAG | 2 cut(s) | 1847, 2355 |
| PaqCI | CACCTGC | 1 cut(s) | 809 |
| PciI | ACATGT | 1 cut(s) | 1105 |
| PctI | GAATGC | 2 cut(s) | 1153, 1379 |
| PfeI | GAWTC | 9 cut(s) | 356, 613, 1294, 1904, 1936, 1955, 2084, 2348, 2548 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1655 |
| PinAI | ACCGGT | 1 cut(s) | 1238 |
| PleI | GAGTC | 6 cut(s) | 490, 1321, 1763, 2051, 2250, 2566 |
| PmeI | GTTTAAAC | 1 cut(s) | 265 |
| PpsI | GAGTC | 6 cut(s) | 490, 1321, 1763, 2051, 2250, 2566 |
| PpuMI | RGGWCCY | 2 cut(s) | 1688, 2212 |
| PscI | ACATGT | 1 cut(s) | 1105 |
| PsiI | TTATAA | 3 cut(s) | 990, 1059, 2451 |
| Psp5II | RGGWCCY | 2 cut(s) | 1688, 2212 |
| Psp6I | CCWGG | 2 cut(s) | 442, 1070 |
| PspFI | CCCAGC | 1 cut(s) | 1391 |
| PspGI | CCWGG | 2 cut(s) | 442, 1070 |
| PspN4I | GGNNCC | 6 cut(s) | 960, 1195, 1689, 1699, 2194, 2214 |
| PspPI | GGNCC | 5 cut(s) | 1194, 1646, 1688, 2192, 2212 |
| PspPPI | RGGWCCY | 2 cut(s) | 1688, 2212 |
| PspXI | VCTCGAGB | 2 cut(s) | 1847, 2355 |
| PstI | CTGCAG | 2 cut(s) | 1336, 2308 |
| PsuI | RGATCY | 5 cut(s) | 866, 1525, 1557, 1602, 1609 |
| PvuII | CAGCTG | 1 cut(s) | 983 |
| RsaI | GTAC | 5 cut(s) | 298, 643, 926, 1413, 1446 |
| RsaNI | GTAC | 5 cut(s) | 297, 642, 925, 1412, 1445 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1110, 1571, 1706 |
| Sau3AI | GATC | 8 cut(s) | 476, 866, 1525, 1557, 1602, 1609, 1658, 1670 |
| Sau96I | GGNCC | 5 cut(s) | 1194, 1646, 1688, 2192, 2212 |
| ScaI | AGTACT | 2 cut(s) | 298, 926 |
| SchI | GAGTC | 6 cut(s) | 491, 1322, 1763, 2051, 2250, 2566 |
| ScrFI | CCNGG | 6 cut(s) | 444, 589, 1005, 1072, 1600, 2035 |
| SduI | GDGCHC | 2 cut(s) | 1465, 2557 |
| SfaNI | GCATC | 6 cut(s) | 235, 327, 1339, 1361, 1666, 2039 |
| SfcI | CTRYAG | 3 cut(s) | 928, 1332, 2304 |
| Sfr274I | CTCGAG | 2 cut(s) | 1847, 2355 |
| SinI | GGWCC | 4 cut(s) | 1646, 1688, 2192, 2212 |
| SlaI | CTCGAG | 2 cut(s) | 1847, 2355 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1110, 1571, 1706 |
| SmlI | CTYRAG | 3 cut(s) | 847, 1847, 2355 |
| SmoI | CTYRAG | 3 cut(s) | 847, 1847, 2355 |
| SphI | GCATGC | 1 cut(s) | 2436 |
| SsiI | CCGC | 7 cut(s) | 196, 231, 234, 239, 242, 1451, 1895 |
| SspMI | CTAG | 7 cut(s) | 1023, 1281, 1421, 1466, 1683, 2201, 2288 |
| StyD4I | CCNGG | 6 cut(s) | 442, 587, 1003, 1070, 1598, 2033 |
| StyI | CCWWGG | 3 cut(s) | 1096, 1262, 2371 |
| TaiI | ACGT | 2 cut(s) | 741, 861 |
| TaqI | TCGA | 8 cut(s) | 423, 524, 601, 1459, 1848, 2055, 2356, 2394 |
| TatI | WGTACW | 4 cut(s) | 296, 641, 924, 1411 |
| TauI | GCSGC | 3 cut(s) | 234, 242, 1454 |
| TfiI | GAWTC | 9 cut(s) | 356, 613, 1294, 1904, 1936, 1955, 2084, 2348, 2548 |
| TscAI | CASTG | 4 cut(s) | 223, 700, 2473, 2549 |
| TseFI | GTSAC | 2 cut(s) | 788, 797 |
| Tsp45I | GTSAC | 2 cut(s) | 788, 797 |
| TspDTI | ATGAA | 6 cut(s) | 1005, 1128, 1160, 1377, 1640, 2549 |
| TspGWI | ACGGA | 8 cut(s) | 144, 712, 1056, 1177, 1387, 1967, 2077, 2376 |
| TspRI | CASTG | 4 cut(s) | 223, 700, 2473, 2549 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1655 |
| Vha464I | CTTAAG | 1 cut(s) | 847 |
| VpaK11BI | GGWCC | 4 cut(s) | 1646, 1688, 2192, 2212 |
| XapI | RAATTY | 2 cut(s) | 775, 933 |
| XbaI | TCTAGA | 2 cut(s) | 1420, 2287 |
| XceI | RCATGY | 2 cut(s) | 1109, 2436 |
| XhoI | CTCGAG | 2 cut(s) | 1847, 2355 |
| XspI | CTAG | 7 cut(s) | 1023, 1281, 1421, 1466, 1683, 2201, 2288 |
| ZrmI | AGTACT | 2 cut(s) | 298, 926 |
| Zsp2I | ATGCAT | 1 cut(s) | 1354 |