U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23180 AT1G23180 |
| fragaria_vesca | FvH4_4g34070 |
| malus_domestica | MD16G1022800.v1.1 |
| prunus_persica | Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 |
| pyrus_communis | pycom16g02010 |
| rosa_chinensis | RchiOBHm_Chr4g0443581 |
| rosa_laevigata | RLG00000005913 |
| rosa_multiflora | Rmu_sc0001118.1_g000017 Rmu_sc0026347.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00384130 |
| rosa_samantha | Rh4AG403200 Rh4AG405100 Rh4BG416100 Rh4CG430600 Rh4DG410500 Rh4DG411700 |
| rosa_wichuraiana | Rw4G034780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 993 |
| AatII | GACGTC | 1 cut(s) | 744 |
| Acc16I | TGCGCA | 1 cut(s) | 2516 |
| Acc65I | GGTACC | 1 cut(s) | 967 |
| AccB1I | GGYRCC | 2 cut(s) | 967, 1082 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1658 |
| AccII | CGCG | 1 cut(s) | 139 |
| AclWI | GGATC | 7 cut(s) | 877, 1523, 1555, 1607, 1613, 1669, 2207 |
| AcsI | RAATTY | 1 cut(s) | 778 |
| AcuI | CTGAAG | 5 cut(s) | 56, 1536, 1878, 1980, 2355 |
| AcyI | GRCGYC | 1 cut(s) | 741 |
| AfaI | GTAC | 4 cut(s) | 646, 969, 1042, 2505 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 308, 977, 1658, 1879, 1936 |
| AflII | CTTAAG | 1 cut(s) | 850 |
| AflIII | ACRYGT | 2 cut(s) | 1108, 1987 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2204 |
| AhlI | ACTAGT | 2 cut(s) | 218, 497 |
| AjnI | CCWGG | 4 cut(s) | 1006, 1073, 1754, 1978 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 890, 922 |
| Alw26I | GTCTC | 4 cut(s) | 266, 1816, 2237, 2542 |
| AlwI | GGATC | 7 cut(s) | 877, 1523, 1555, 1607, 1613, 1669, 2207 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1183 |
| Ama87I | CYCGRG | 3 cut(s) | 603, 1819, 2355 |
| AoxI | GGCC | 6 cut(s) | 6, 1022, 1197, 1690, 1938, 2421 |
| ApaI | GGGCCC | 1 cut(s) | 10 |
| ApoI | RAATTY | 1 cut(s) | 778 |
| Asp718I | GGTACC | 1 cut(s) | 967 |
| AspLEI | GCGC | 3 cut(s) | 141, 391, 2517 |
| AsuC2I | CCSGG | 2 cut(s) | 592, 2035 |
| AsuHPI | GGTGA | 9 cut(s) | 185, 199, 242, 276, 323, 637, 760, 2089, 2182 |
| AvaI | CYCGRG | 3 cut(s) | 603, 1819, 2355 |
| AvaII | GGWCC | 4 cut(s) | 299, 352, 1649, 2192 |
| BaeGI | GKGCMC | 2 cut(s) | 10, 2557 |
| BanI | GGYRCC | 2 cut(s) | 967, 1082 |
| BanII | GRGCYC | 2 cut(s) | 10, 160 |
| BauI | CACGAG | 1 cut(s) | 2240 |
| BbsI | GAAGAC | 3 cut(s) | 136, 1317, 1953 |
| BccI | CCATC | 7 cut(s) | 104, 221, 308, 440, 1570, 1640, 1853 |
| BceAI | ACGGC | 5 cut(s) | 694, 820, 2291, 2345, 2408 |
| BciT130I | CCWGG | 4 cut(s) | 1008, 1075, 1756, 1980 |
| BciVI | GTATCC | 2 cut(s) | 1585, 1876 |
| BcnI | CCSGG | 2 cut(s) | 592, 2035 |
| BcoDI | GTCTC | 4 cut(s) | 266, 1816, 2237, 2542 |
| BcuI | ACTAGT | 2 cut(s) | 218, 497 |
| BfaI | CTAG | 9 cut(s) | 219, 498, 536, 947, 1284, 1451, 1469, 1617, 2489 |
| BfmI | CTRYAG | 2 cut(s) | 1335, 2367 |
| BfoI | RGCGCY | 1 cut(s) | 392 |
| BfrI | CTTAAG | 1 cut(s) | 850 |
| BfuI | GTATCC | 2 cut(s) | 1585, 1876 |
| Bme1390I | CCNGG | 6 cut(s) | 592, 1008, 1075, 1756, 1980, 2035 |
| Bme18I | GGWCC | 4 cut(s) | 299, 352, 1649, 2192 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2204 |
| BmeT110I | CYCGRG | 3 cut(s) | 603, 1819, 2355 |
| BmiI | GGNNCC | 8 cut(s) | 8, 9, 574, 969, 1084, 1198, 1702, 2194 |
| BmrFI | CCNGG | 6 cut(s) | 592, 1008, 1075, 1756, 1980, 2035 |
| BmsI | GCATC | 6 cut(s) | 330, 418, 1342, 1364, 1429, 1669 |
| BoxI | GACNNNNGTC | 1 cut(s) | 237 |
| BpiI | GAAGAC | 3 cut(s) | 136, 1317, 1953 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 476, 508 |
| BpmI | CTGGAG | 1 cut(s) | 2517 |
| BpuEI | CTTGAG | 6 cut(s) | 100, 158, 679, 1817, 1871, 2105 |
| BpuMI | CCSGG | 2 cut(s) | 592, 2035 |
| BsaBI | GATNNNNATC | 1 cut(s) | 927 |
| BsaHI | GRCGYC | 1 cut(s) | 741 |
| BsaI | GGTCTC | 2 cut(s) | 266, 2237 |
| BsaJI | CCNNGG | 7 cut(s) | 726, 1099, 1265, 1587, 1754, 1755, 1979 |
| BsaWI | WCCGGW | 1 cut(s) | 964 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 24, 54 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 308, 977, 1658, 1879, 1936 |
| Bse118I | RCCGGY | 1 cut(s) | 2009 |
| Bse1I | ACTGG | 4 cut(s) | 720, 1246, 1652, 2507 |
| Bse3DI | GCAATG | 1 cut(s) | 1495 |
| Bse8I | GATNNNNATC | 1 cut(s) | 927 |
| BseBI | CCWGG | 4 cut(s) | 1008, 1075, 1756, 1980 |
| BseDI | CCNNGG | 7 cut(s) | 726, 1099, 1265, 1587, 1754, 1755, 1979 |
| BseGI | GGATG | 5 cut(s) | 345, 736, 1684, 1845, 1924 |
| BseJI | GATNNNNATC | 1 cut(s) | 927 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 308, 977, 1658, 1879, 1936 |
| BseMI | GCAATG | 1 cut(s) | 1495 |
| BseMII | CTCAG | 5 cut(s) | 612, 1080, 1475, 2447, 2558 |
| BseNI | ACTGG | 4 cut(s) | 720, 1246, 1652, 2507 |
| BseRI | GAGGAG | 1 cut(s) | 77 |
| BseSI | GKGCMC | 2 cut(s) | 10, 2557 |
| BseYI | CCCAGC | 1 cut(s) | 1394 |
| BsgI | GTGCAG | 2 cut(s) | 1002, 1843 |
| Bsh1236I | CGCG | 1 cut(s) | 139 |
| Bsh1285I | CGRYCG | 1 cut(s) | 137 |
| BshFI | GGCC | 6 cut(s) | 8, 1024, 1199, 1692, 1940, 2423 |
| BshNI | GGYRCC | 2 cut(s) | 967, 1082 |
| BsiEI | CGRYCG | 1 cut(s) | 137 |
| BsiHKCI | CYCGRG | 3 cut(s) | 603, 1819, 2355 |
| BsiSI | CCGG | 4 cut(s) | 591, 965, 2010, 2035 |
| BslFI | GGGAC | 2 cut(s) | 77, 2178 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 308, 977, 1658, 1879, 1936 |
| BsmAI | GTCTC | 4 cut(s) | 266, 1816, 2237, 2542 |
| BsmBI | CGTCTC | 1 cut(s) | 2542 |
| BsmFI | GGGAC | 2 cut(s) | 77, 2178 |
| BsmI | GAATGC | 3 cut(s) | 904, 1156, 1382 |
| BsnI | GGCC | 6 cut(s) | 8, 1024, 1199, 1692, 1940, 2423 |
| Bso31I | GGTCTC | 2 cut(s) | 266, 2237 |
| BsoBI | CYCGRG | 3 cut(s) | 603, 1819, 2355 |
| Bsp120I | GGGCCC | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 3 cut(s) | 10, 160, 2557 |
| Bsp19I | CCATGG | 1 cut(s) | 1265 |
| BspANI | GGCC | 6 cut(s) | 8, 1024, 1199, 1692, 1940, 2423 |
| BspCNI | CTCAG | 5 cut(s) | 613, 1081, 1474, 2448, 2559 |
| BspFNI | CGCG | 1 cut(s) | 139 |
| BspLI | GGNNCC | 8 cut(s) | 8, 9, 574, 969, 1084, 1198, 1702, 2194 |
| BspMAI | CTGCAG | 2 cut(s) | 1339, 2371 |
| BspPI | GGATC | 7 cut(s) | 877, 1523, 1555, 1607, 1613, 1669, 2207 |
| BspT107I | GGYRCC | 2 cut(s) | 967, 1082 |
| BspTI | CTTAAG | 1 cut(s) | 850 |
| BspTNI | GGTCTC | 2 cut(s) | 266, 2237 |
| BsrDI | GCAATG | 1 cut(s) | 1495 |
| BsrFI | RCCGGY | 1 cut(s) | 2009 |
| BsrI | ACTGG | 4 cut(s) | 720, 1246, 1652, 2507 |
| BssAI | RCCGGY | 1 cut(s) | 2009 |
| BssECI | CCNNGG | 7 cut(s) | 726, 1099, 1265, 1587, 1754, 1755, 1979 |
| BssNI | GRCGYC | 1 cut(s) | 741 |
| BssSI | CACGAG | 1 cut(s) | 2240 |
| BssT1I | CCWWGG | 4 cut(s) | 726, 1099, 1265, 1587 |
| Bst2BI | CACGAG | 1 cut(s) | 2240 |
| Bst2UI | CCWGG | 4 cut(s) | 1008, 1075, 1756, 1980 |
| Bst6I | CTCTTC | 1 cut(s) | 576 |
| BstACI | GRCGYC | 1 cut(s) | 741 |
| BstAFI | CTTAAG | 1 cut(s) | 850 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 899 |
| BstC8I | GCNNGC | 2 cut(s) | 378, 636 |
| BstDEI | CTNAG | 9 cut(s) | 476, 621, 1089, 1411, 1461, 1609, 2061, 2456, 2567 |
| BstDSI | CCRYGG | 1 cut(s) | 1265 |
| BstF5I | GGATG | 5 cut(s) | 345, 736, 1684, 1845, 1924 |
| BstFNI | CGCG | 1 cut(s) | 139 |
| BstH2I | RGCGCY | 1 cut(s) | 392 |
| BstHHI | GCGC | 3 cut(s) | 141, 391, 2517 |
| BstMAI | GTCTC | 4 cut(s) | 266, 1816, 2237, 2542 |
| BstMCI | CGRYCG | 1 cut(s) | 137 |
| BstNI | CCWGG | 4 cut(s) | 1008, 1075, 1756, 1980 |
| BstNSI | RCATGY | 3 cut(s) | 1112, 1991, 2436 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 237 |
| BstSCI | CCNGG | 6 cut(s) | 590, 1006, 1073, 1754, 1978, 2033 |
| BstSFI | CTRYAG | 2 cut(s) | 1335, 2367 |
| BstSLI | GKGCMC | 2 cut(s) | 10, 2557 |
| BstUI | CGCG | 1 cut(s) | 139 |
| BstV2I | GAAGAC | 3 cut(s) | 136, 1317, 1953 |
| BstX2I | RGATCY | 5 cut(s) | 869, 1528, 1560, 1605, 1612 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1207, 1723, 2260 |
| BstYI | RGATCY | 5 cut(s) | 869, 1528, 1560, 1605, 1612 |
| BsuI | GTATCC | 2 cut(s) | 1585, 1876 |
| BsuRI | GGCC | 6 cut(s) | 8, 1024, 1199, 1692, 1940, 2423 |
| BtgI | CCRYGG | 1 cut(s) | 1265 |
| BtsCI | GGATG | 5 cut(s) | 345, 736, 1684, 1845, 1924 |
| BtsI | GCAGTG | 1 cut(s) | 2592 |
| BtsIMutI | CAGTG | 6 cut(s) | 32, 574, 703, 2473, 2549, 2592 |
| Cac8I | GCNNGC | 2 cut(s) | 378, 636 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1183 |
| CfoI | GCGC | 3 cut(s) | 141, 391, 2517 |
| Cfr10I | RCCGGY | 1 cut(s) | 2009 |
| CseI | GACGC | 2 cut(s) | 242, 1177 |
| CsiI | ACCWGGT | 1 cut(s) | 1006 |
| Csp6I | GTAC | 4 cut(s) | 645, 968, 1041, 2504 |
| CviQI | GTAC | 4 cut(s) | 645, 968, 1041, 2504 |
| DdeI | CTNAG | 9 cut(s) | 476, 621, 1089, 1411, 1461, 1609, 2061, 2456, 2567 |
| DraI | TTTAAA | 1 cut(s) | 1548 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2204 |
| Eam1104I | CTCTTC | 1 cut(s) | 576 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2204 |
| EarI | CTCTTC | 1 cut(s) | 576 |
| EciI | GGCGGA | 2 cut(s) | 1618, 2077 |
| Eco130I | CCWWGG | 4 cut(s) | 726, 1099, 1265, 1587 |
| Eco24I | GRGCYC | 2 cut(s) | 10, 160 |
| Eco31I | GGTCTC | 2 cut(s) | 266, 2237 |
| Eco32I | GATATC | 1 cut(s) | 929 |
| Eco47I | GGWCC | 4 cut(s) | 299, 352, 1649, 2192 |
| Eco57I | CTGAAG | 5 cut(s) | 56, 1536, 1878, 1980, 2355 |
| Eco88I | CYCGRG | 3 cut(s) | 603, 1819, 2355 |
| EcoO109I | RGGNCCY | 3 cut(s) | 7, 1691, 1939 |
| EcoRII | CCWGG | 4 cut(s) | 1006, 1073, 1754, 1978 |
| EcoRV | GATATC | 1 cut(s) | 929 |
| EcoT14I | CCWWGG | 4 cut(s) | 726, 1099, 1265, 1587 |
| EcoT22I | ATGCAT | 1 cut(s) | 1357 |
| EcoT38I | GRGCYC | 2 cut(s) | 10, 160 |
| ErhI | CCWWGG | 4 cut(s) | 726, 1099, 1265, 1587 |
| Esp3I | CGTCTC | 1 cut(s) | 2542 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1678, 1710, 1998, 2030 |
| FaqI | GGGAC | 2 cut(s) | 77, 2178 |
| FauI | CCCGC | 2 cut(s) | 404, 754 |
| FauNDI | CATATG | 1 cut(s) | 1371 |
| FokI | GGATG | 5 cut(s) | 352, 743, 1691, 1832, 1931 |
| FriOI | GRGCYC | 2 cut(s) | 10, 160 |
| FspBI | CTAG | 9 cut(s) | 219, 498, 536, 947, 1284, 1451, 1469, 1617, 2489 |
| FspI | TGCGCA | 1 cut(s) | 2516 |
| GlaI | GCGC | 3 cut(s) | 140, 390, 2516 |
| GsaI | CCCAGC | 1 cut(s) | 1398 |
| GsuI | CTGGAG | 1 cut(s) | 2517 |
| HaeII | RGCGCY | 1 cut(s) | 392 |
| HaeIII | GGCC | 6 cut(s) | 8, 1024, 1199, 1692, 1940, 2423 |
| HapII | CCGG | 4 cut(s) | 591, 965, 2010, 2035 |
| HgaI | GACGC | 2 cut(s) | 242, 1177 |
| HhaI | GCGC | 3 cut(s) | 141, 391, 2517 |
| Hin1I | GRCGYC | 1 cut(s) | 741 |
| Hin6I | GCGC | 3 cut(s) | 139, 389, 2515 |
| HinP1I | GCGC | 3 cut(s) | 139, 389, 2515 |
| HincII | GTYRAC | 1 cut(s) | 1247 |
| HindII | GTYRAC | 1 cut(s) | 1247 |
| HpaII | CCGG | 4 cut(s) | 591, 965, 2010, 2035 |
| HphI | GGTGA | 9 cut(s) | 185, 199, 242, 276, 323, 637, 760, 2089, 2182 |
| Hpy166II | GTNNAC | 3 cut(s) | 1043, 1247, 1273 |
| Hpy188III | TCNNGA | 5 cut(s) | 117, 365, 446, 1469, 1796 |
| Hpy8I | GTNNAC | 3 cut(s) | 1043, 1247, 1273 |
| Hpy99I | CGWCG | 1 cut(s) | 2429 |
| HpyCH4IV | ACGT | 1 cut(s) | 741 |
| HpyF3I | CTNAG | 9 cut(s) | 476, 621, 1089, 1411, 1461, 1609, 2061, 2456, 2567 |
| HpySE526I | ACGT | 1 cut(s) | 741 |
| Hsp92I | GRCGYC | 1 cut(s) | 741 |
| HspAI | GCGC | 3 cut(s) | 139, 389, 2515 |
| KpnI | GGTACC | 1 cut(s) | 971 |
| LmnI | GCTCC | 5 cut(s) | 45, 572, 631, 2263, 2498 |
| LweI | GCATC | 6 cut(s) | 330, 418, 1342, 1364, 1429, 1669 |
| MabI | ACCWGGT | 1 cut(s) | 1006 |
| MaeI | CTAG | 9 cut(s) | 219, 498, 536, 947, 1284, 1451, 1469, 1617, 2489 |
| MaeII | ACGT | 1 cut(s) | 741 |
| MaeIII | GTNAC | 7 cut(s) | 214, 221, 230, 711, 1092, 2037, 2230 |
| MfeI | CAATTG | 1 cut(s) | 1344 |
| MflI | RGATCY | 5 cut(s) | 869, 1528, 1560, 1605, 1612 |
| MhlI | GDGCHC | 3 cut(s) | 10, 160, 2557 |
| MlyI | GAGTC | 7 cut(s) | 222, 353, 494, 1325, 1349, 2051, 2250 |
| MmeI | TCCRAC | 5 cut(s) | 82, 99, 888, 1141, 1954 |
| Mph1103I | ATGCAT | 1 cut(s) | 1357 |
| MslI | CAYNNNNRTG | 3 cut(s) | 257, 1113, 1205 |
| MspA1I | CMGCKG | 1 cut(s) | 986 |
| MspCI | CTTAAG | 1 cut(s) | 850 |
| MspI | CCGG | 4 cut(s) | 591, 965, 2010, 2035 |
| MspR9I | CCNGG | 6 cut(s) | 592, 1008, 1075, 1756, 1980, 2035 |
| MunI | CAATTG | 1 cut(s) | 1344 |
| Mva1269I | GAATGC | 3 cut(s) | 904, 1156, 1382 |
| MvaI | CCWGG | 4 cut(s) | 1008, 1075, 1756, 1980 |
| MvnI | CGCG | 1 cut(s) | 139 |
| NciI | CCSGG | 2 cut(s) | 592, 2035 |
| NcoI | CCATGG | 1 cut(s) | 1265 |
| NdeI | CATATG | 1 cut(s) | 1371 |
| NlaIV | GGNNCC | 8 cut(s) | 8, 9, 574, 969, 1084, 1198, 1702, 2194 |
| NmuCI | GTSAC | 3 cut(s) | 214, 221, 230 |
| NsbI | TGCGCA | 1 cut(s) | 2516 |
| NsiI | ATGCAT | 1 cut(s) | 1357 |
| NspI | RCATGY | 3 cut(s) | 1112, 1991, 2436 |
| PaeR7I | CTCGAG | 2 cut(s) | 603, 2355 |
| PasI | CCCWGGG | 1 cut(s) | 1755 |
| PciI | ACATGT | 2 cut(s) | 1108, 1987 |
| PctI | GAATGC | 3 cut(s) | 904, 1156, 1382 |
| PfeI | GAWTC | 7 cut(s) | 463, 1297, 1772, 1907, 1955, 2084, 2348 |
| PflFI | GACNNNGTC | 1 cut(s) | 1008 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1658 |
| PleI | GAGTC | 7 cut(s) | 221, 353, 493, 1324, 1348, 2051, 2250 |
| PpsI | GAGTC | 7 cut(s) | 221, 353, 493, 1324, 1348, 2051, 2250 |
| PscI | ACATGT | 2 cut(s) | 1108, 1987 |
| PshAI | GACNNNNGTC | 1 cut(s) | 237 |
| PsiI | TTATAA | 1 cut(s) | 993 |
| Psp6I | CCWGG | 4 cut(s) | 1006, 1073, 1754, 1978 |
| PspFI | CCCAGC | 1 cut(s) | 1394 |
| PspGI | CCWGG | 4 cut(s) | 1006, 1073, 1754, 1978 |
| PspN4I | GGNNCC | 8 cut(s) | 8, 9, 574, 969, 1084, 1198, 1702, 2194 |
| PspOMI | GGGCCC | 1 cut(s) | 6 |
| PspXI | VCTCGAGB | 2 cut(s) | 603, 2355 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2563, 2595 |
| PstI | CTGCAG | 2 cut(s) | 1339, 2371 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1183 |
| PsuI | RGATCY | 5 cut(s) | 869, 1528, 1560, 1605, 1612 |
| PsyI | GACNNNGTC | 1 cut(s) | 1008 |
| PvuII | CAGCTG | 1 cut(s) | 986 |
| RsaI | GTAC | 4 cut(s) | 646, 969, 1042, 2505 |
| RsaNI | GTAC | 4 cut(s) | 645, 968, 1041, 2504 |
| RseI | CAYNNNNRTG | 3 cut(s) | 257, 1113, 1205 |
| SchI | GAGTC | 7 cut(s) | 222, 353, 494, 1325, 1349, 2051, 2250 |
| ScrFI | CCNGG | 6 cut(s) | 592, 1008, 1075, 1756, 1980, 2035 |
| SduI | GDGCHC | 3 cut(s) | 10, 160, 2557 |
| SexAI | ACCWGGT | 1 cut(s) | 1006 |
| SfaNI | GCATC | 6 cut(s) | 330, 418, 1342, 1364, 1429, 1669 |
| SfcI | CTRYAG | 2 cut(s) | 1335, 2367 |
| Sfr274I | CTCGAG | 2 cut(s) | 603, 2355 |
| SinI | GGWCC | 4 cut(s) | 299, 352, 1649, 2192 |
| SlaI | CTCGAG | 2 cut(s) | 603, 2355 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 257, 1113, 1205 |
| SmlI | CTYRAG | 9 cut(s) | 115, 173, 603, 658, 850, 1796, 1850, 2120, 2355 |
| SmoI | CTYRAG | 9 cut(s) | 115, 173, 603, 658, 850, 1796, 1850, 2120, 2355 |
| SpeI | ACTAGT | 2 cut(s) | 218, 497 |
| SspI | AATATT | 4 cut(s) | 401, 1543, 1572, 2382 |
| SspMI | CTAG | 9 cut(s) | 219, 498, 536, 947, 1284, 1451, 1469, 1617, 2489 |
| StyD4I | CCNGG | 6 cut(s) | 590, 1006, 1073, 1754, 1978, 2033 |
| StyI | CCWWGG | 4 cut(s) | 726, 1099, 1265, 1587 |
| TaiI | ACGT | 1 cut(s) | 744 |
| TaqI | TCGA | 7 cut(s) | 154, 604, 2001, 2055, 2208, 2356, 2427 |
| TatI | WGTACW | 1 cut(s) | 644 |
| TauI | GCSGC | 2 cut(s) | 761, 1841 |
| TfiI | GAWTC | 7 cut(s) | 463, 1297, 1772, 1907, 1955, 2084, 2348 |
| TscAI | CASTG | 6 cut(s) | 39, 574, 703, 2473, 2549, 2599 |
| TseFI | GTSAC | 3 cut(s) | 214, 221, 230 |
| Tsp45I | GTSAC | 3 cut(s) | 214, 221, 230 |
| TspDTI | ATGAA | 7 cut(s) | 698, 1008, 1163, 1230, 1380, 1643, 2549 |
| TspGWI | ACGGA | 2 cut(s) | 352, 1180 |
| TspRI | CASTG | 6 cut(s) | 39, 574, 703, 2473, 2549, 2599 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1008 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1658 |
| Vha464I | CTTAAG | 1 cut(s) | 850 |
| VpaK11BI | GGWCC | 4 cut(s) | 299, 352, 1649, 2192 |
| XapI | RAATTY | 1 cut(s) | 778 |
| XbaI | TCTAGA | 1 cut(s) | 1468 |
| XceI | RCATGY | 3 cut(s) | 1112, 1991, 2436 |
| XhoI | CTCGAG | 2 cut(s) | 603, 2355 |
| XspI | CTAG | 9 cut(s) | 219, 498, 536, 947, 1284, 1451, 1469, 1617, 2489 |
| ZraI | GACGTC | 1 cut(s) | 742 |
| Zsp2I | ATGCAT | 1 cut(s) | 1357 |