Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010363

Physical Location & Seq

Genomic Coordinates Reverse (-)

70686853 .. 70690824

Gene Structure 3972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGTGGGCCCCAACACTCCAAGCACCATTTACACTGAAGCGCCCTCATCTCCTTCTCCAACCTTCTCCAACCTCCAACACGACCCTCGTCCCCATCACAGCAACTCAAACCTCAAGACCCAGAAGAAGAAGACGACCGCGCCTCTCTTTCTTTCACCGCACATTCCTCACCAGAGTCACTAGTGACGATGGTGACGCTGGTCATCATACACACACGGGTATGGAAGAAAGAGAGACCAGCCCTTCACCTTCTTCTTCTGGTCCGAATGTTGGTGATGGTTATGTAGCCTTGTTTATTCGGATGCTTGGGCTGGACCATGACTCTCTTGACAGAGAGCAAGCAATAGTGGCGCTGTGGAAATATTCACTTGGTGGGAAGAAGTATATTGATGCCATCATGCAGTTTCCTGACTGCATACATTTGATTCTGAACTTACTAAGATCAGAGTCCAGCTCCACTTGTGAAGCTGCTGCTGGTCTTTTGAGATCAATAGCTCTAGTTAATTCATATAGGGATTTGGTAGCAAACAGTGGAGCCATTGAAGAGATTACCGGGTTGCTCACTCGAGCTTCCACGACTTCTGAGGTGAAGGAGCAGGCTATATGTACTCTGTGGAACTTGAGTGTAGATGAGAAGTTCAGAATGAAGATTGCTAACAGTGATCTCTTGCCGTTACTGGTTAAGTCCTTGGATGATGAGGACGTCAAGGTGAAGGAAGCCGCGGGAGGGGTTTTGGCAAATTTGGCATTAAGCGAATTTAATCACGGCATTATGGTTGAAGCTGGTGTTATACCACAATTGGCAAAGCTCTTAAGAACTGACATTGAAGGATCTAAAGTAATTAAAAAGGAGGCAAGGAATGCTCTGTTGGAACTATGTAAGGATAGATATCATAGAATTACTATCCTAGAGGAAGGTCTTGTTCCGGTACCCATGATTGGTGCAGCTGCTTATAAGTCATTCAGACCAGGTCTTTATTCATGGCCTGCTTTGCCAGACGGTACACAGATTGAGCAGACTTCTAAAACTCCTTCCAGGTTTGGTGCCTCTGAGTTACTCCTTGGATTACATGTTGATGATAAGAATGCAAACATAGAGGAAGCAAAGATGAATGCAGTAGTTGGACGGACACAGCAACAGTTTCTGGCTCGTATTGGGGCCATTGAAATGGGTGATGAAAAGAAACAGTCTGAATTAGCAACTGGTCAACAACTCACACTTTTGCCATGGGTGGACGGGGTTGCTAGATTGGTTTTGATTCTTGGACTTGAAGACGAGTCAGCAATAGTGAGAGCTGCAGAGTCAATTGCTGATGCATCTATAAATGAACATATGCGGATAGCATTCAAGGAAGCTGGGGCAGTTAAGCTCTTAGTTCAGCTTCTTAACAGTAAGAATGATGCTGTCAGACTAGCTGCAACTCAAGCTCTAGAGAGGTTGTCTGTCAGCAATGTTGTTTGCCAGATAATTGAAGCTGAAGATGCTTTAGATCCTTTGGTTAATATTTTAAAGAACCCAGAGATCCCTGAAATATTGATGGAAAAGACCTTGGATACTCTTGGGCGGATCTTAGATCCTAGTAAAGAGATGAAGTCAAAGTTTTATGATGGACCAGTAAATGGATCGGAAAGGGGTTCGGATGCTGCAAGAGGCCCTTATGGTTCCAAAGGAATAACCGGAGATGTGGCTCATACACCGATTTCAAAAACAAATCCCAGGGAAGCTGTGCTTGATTCTGGGGTTATCACTCGCCTTCTTGAGATATTAAAGACCCCAACCCCGAGACTACAAAGAAAAGCGGCTTCCATCCTTGAGTTCTGCACAGTTATTGACCCAAGCATGGATACTATTACTTCAGCAGATATAGAATCTGGTTTGGATGTTGTATTCCAACAAAAGGCCCTTGAAGACATGGAATCTGAAGTAGATTATTGGCAGCCAGGGAAACATGTCCTTGAAGTTGAAGAAGCCGGTCTTGTTATATCAGCAGCCTCCCGGTTACTAACAAAACTGCTCGACTCTAAGAAGTTTTGCCAAAAAATAGATTCCGCCCATTTCACCAAATTGCTCTGTAATATCCTCAAGTCTGATATTCCCCTTCGCAACAAAGATTGGGTTGCTGCTTGTTTGGTGAAACTTGGTTCTCTTTCTGGTCCCAGACTAAATGTCGATGACCCAATCAACATGGAAGTAACTCTCCACGAGACCATTCCCAGACTCATGGAGCAGCTCAAAACCTCCTTCTCTCCGCAATCAAAGGAAGCTGCCGTTATAGAACTCAACAGAATAATCTCTGAAGGGGTGGTTGATTCCACTCGAGCCGTTGCTGCAGAGGGAGGAATATTTCCTTTAGTGAAACTGATTGAAGAAGGGAGTGAGAGGGCCGTCGAAGCATGTTTGGCTATATTATATAATCTGAGCATGGACAGTGAGAACCATTCGGCAATTCTAGCTGCTGGAGCTGTACCAGTTTTGCGCAGAATAGTTCTATCAGAAAGACCACAGTGGAGACGGGCACTTCATTTACTGAGAACTCTACCTACATTAGAAGGCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm KAP

Protein Analysis

853

Amino Acids

93.42

Weight (kDa)

5.78

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_ARMC5	PF24768	138 - 306	1.8e-10	ARMC5
ARM_PUB	PF25598	170 - 309	1.1e-06	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	660 - 845	4.8e-06	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23180 AT1G23180
fragaria_vesca	FvH4_4g34070
malus_domestica	MD16G1022800.v1.1
prunus_persica	Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1 Prupe.1G330100_v2.0.a1
pyrus_communis	pycom16g02010
rosa_chinensis	RchiOBHm_Chr4g0443581
rosa_laevigata	RLG00000005913
rosa_multiflora	Rmu_sc0001118.1_g000017 Rmu_sc0026347.1_g000006
rosa_roxburghii	Rroxscaffold_5G00384130
rosa_samantha	Rh4AG403200 Rh4AG405100 Rh4BG416100 Rh4CG430600 Rh4DG410500 Rh4DG411700
rosa_wichuraiana	Rw4G034780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	954
AatII	GACGTC	1 cut(s)	705
Acc16I	TGCGCA	1 cut(s)	2477
Acc65I	GGTACC	1 cut(s)	928
AccB1I	GGYRCC	2 cut(s)	928, 1043
AccB7I	CCANNNNNTGG	1 cut(s)	1619
AccII	CGCG	2 cut(s)	139, 722
AciI	CCGC	9 cut(s)	137, 157, 720, 722, 1336, 1564, 1799, 2049, 2249
AclWI	GGATC	6 cut(s)	838, 1484, 1516, 1568, 1574, 1630
AcsI	RAATTY	2 cut(s)	739, 755
AcuI	CTGAAG	5 cut(s)	56, 1497, 1839, 1941, 2316
AcyI	GRCGYC	1 cut(s)	702
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	4 cut(s)	607, 930, 1003, 2466
AfiI	CCNNNNNNNGG	6 cut(s)	269, 726, 938, 1619, 1840, 1897
AflII	CTTAAG	1 cut(s)	811
AflIII	ACRYGT	2 cut(s)	1069, 1948
AhdI	GACNNNNNGTC	1 cut(s)	2165
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	4 cut(s)	967, 1034, 1715, 1939
AjuI	GAANNNNNNNTTGG	2 cut(s)	851, 883
Alw26I	GTCTC	4 cut(s)	227, 1777, 2198, 2503
AlwI	GGATC	6 cut(s)	838, 1484, 1516, 1568, 1574, 1630
AlwNI	CAGNNNCTG	1 cut(s)	1144
Ama87I	CYCGRG	3 cut(s)	564, 1780, 2316
AoxI	GGCC	6 cut(s)	6, 983, 1158, 1651, 1899, 2382
ApaI	GGGCCC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	739, 755
Asp718I	GGTACC	1 cut(s)	928
AspLEI	GCGC	4 cut(s)	42, 141, 352, 2478
AsuC2I	CCSGG	2 cut(s)	553, 1996
AvaI	CYCGRG	3 cut(s)	564, 1780, 2316
AvaII	GGWCC	4 cut(s)	260, 313, 1610, 2153
BaeGI	GKGCMC	2 cut(s)	10, 2518
BanI	GGYRCC	2 cut(s)	928, 1043
BanII	GRGCYC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	2201
BbsI	GAAGAC	3 cut(s)	136, 1278, 1914
BccI	CCATC	7 cut(s)	101, 182, 269, 401, 1531, 1601, 1814
BceAI	ACGGC	5 cut(s)	655, 781, 2252, 2306, 2369
BciT130I	CCWGG	4 cut(s)	969, 1036, 1717, 1941
BciVI	GTATCC	2 cut(s)	1546, 1837
BcnI	CCSGG	2 cut(s)	553, 1996
BcoDI	GTCTC	4 cut(s)	227, 1777, 2198, 2503
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	8 cut(s)	180, 497, 908, 1245, 1412, 1430, 1578, 2450
BfmI	CTRYAG	2 cut(s)	1296, 2328
BfoI	RGCGCY	2 cut(s)	43, 353
BfrI	CTTAAG	1 cut(s)	811
BfuI	GTATCC	2 cut(s)	1546, 1837
Bme1390I	CCNGG	6 cut(s)	553, 969, 1036, 1717, 1941, 1996
Bme18I	GGWCC	4 cut(s)	260, 313, 1610, 2153
BmeRI	GACNNNNNGTC	1 cut(s)	2165
BmeT110I	CYCGRG	3 cut(s)	564, 1780, 2316
BmiI	GGNNCC	8 cut(s)	8, 9, 535, 930, 1045, 1159, 1663, 2155
BmrFI	CCNGG	6 cut(s)	553, 969, 1036, 1717, 1941, 1996
BmsI	GCATC	7 cut(s)	291, 379, 1303, 1325, 1390, 1471, 1630
BoxI	GACNNNNGTC	2 cut(s)	86, 198
BpiI	GAAGAC	3 cut(s)	136, 1278, 1914
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BpmI	CTGGAG	1 cut(s)	2478
BpuEI	CTTGAG	6 cut(s)	97, 640, 1407, 1778, 1832, 2066
BpuMI	CCSGG	2 cut(s)	553, 1996
BsaBI	GATNNNNATC	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	2 cut(s)	227, 2198
BsaJI	CCNNGG	8 cut(s)	687, 720, 1060, 1226, 1548, 1715, 1716, 1940
BsaWI	WCCGGW	2 cut(s)	925, 1676
Bsc4I	CCNNNNNNNGG	6 cut(s)	269, 726, 938, 1619, 1840, 1897
Bse118I	RCCGGY	1 cut(s)	1970
Bse1I	ACTGG	4 cut(s)	681, 1207, 1613, 2468
Bse3DI	GCAATG	1 cut(s)	1456
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	4 cut(s)	969, 1036, 1717, 1941
BseDI	CCNNGG	8 cut(s)	687, 720, 1060, 1226, 1548, 1715, 1716, 1940
BseGI	GGATG	5 cut(s)	306, 697, 1645, 1806, 1885
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	6 cut(s)	269, 726, 938, 1619, 1840, 1897
BseMI	GCAATG	1 cut(s)	1456
BseMII	CTCAG	4 cut(s)	573, 1041, 2408, 2519
BseNI	ACTGG	4 cut(s)	681, 1207, 1613, 2468
BseSI	GKGCMC	2 cut(s)	10, 2518
BseYI	CCCAGC	1 cut(s)	1355
BsgI	GTGCAG	2 cut(s)	963, 1804
Bsh1236I	CGCG	2 cut(s)	139, 722
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	6 cut(s)	8, 985, 1160, 1653, 1901, 2384
BshNI	GGYRCC	2 cut(s)	928, 1043
BsiEI	CGRYCG	1 cut(s)	137
BsiHKCI	CYCGRG	3 cut(s)	564, 1780, 2316
BsiSI	CCGG	5 cut(s)	552, 926, 1677, 1971, 1996
BslFI	GGGAC	2 cut(s)	74, 2139
BslI	CCNNNNNNNGG	6 cut(s)	269, 726, 938, 1619, 1840, 1897
BsmAI	GTCTC	4 cut(s)	227, 1777, 2198, 2503
BsmBI	CGTCTC	1 cut(s)	2503
BsmFI	GGGAC	2 cut(s)	74, 2139
BsmI	GAATGC	4 cut(s)	865, 1090, 1117, 1343
BsnI	GGCC	6 cut(s)	8, 985, 1160, 1653, 1901, 2384
Bso31I	GGTCTC	2 cut(s)	227, 2198
BsoBI	CYCGRG	3 cut(s)	564, 1780, 2316
Bsp120I	GGGCCC	1 cut(s)	6
Bsp1286I	GDGCHC	2 cut(s)	10, 2518
Bsp143I	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
Bsp19I	CCATGG	1 cut(s)	1226
BspACI	CCGC	9 cut(s)	137, 157, 720, 722, 1336, 1564, 1799, 2049, 2249
BspANI	GGCC	6 cut(s)	8, 985, 1160, 1653, 1901, 2384
BspCNI	CTCAG	4 cut(s)	574, 1042, 2409, 2520
BspFNI	CGCG	2 cut(s)	139, 722
BspLI	GGNNCC	8 cut(s)	8, 9, 535, 930, 1045, 1159, 1663, 2155
BspMAI	CTGCAG	2 cut(s)	1300, 2332
BspPI	GGATC	6 cut(s)	838, 1484, 1516, 1568, 1574, 1630
BspT107I	GGYRCC	2 cut(s)	928, 1043
BspTI	CTTAAG	1 cut(s)	811
BspTNI	GGTCTC	2 cut(s)	227, 2198
BsrDI	GCAATG	1 cut(s)	1456
BsrFI	RCCGGY	1 cut(s)	1970
BsrI	ACTGG	4 cut(s)	681, 1207, 1613, 2468
BssAI	RCCGGY	1 cut(s)	1970
BssECI	CCNNGG	8 cut(s)	687, 720, 1060, 1226, 1548, 1715, 1716, 1940
BssMI	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
BssNI	GRCGYC	1 cut(s)	702
BssSI	CACGAG	1 cut(s)	2201
BssT1I	CCWWGG	4 cut(s)	687, 1060, 1226, 1548
Bst2BI	CACGAG	1 cut(s)	2201
Bst2UI	CCWGG	4 cut(s)	969, 1036, 1717, 1941
Bst4CI	ACNGT	9 cut(s)	530, 659, 1001, 1140, 1188, 1391, 1825, 2429, 2505
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	702
BstAFI	CTTAAG	1 cut(s)	811
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	3 cut(s)	339, 597, 987
BstDEI	CTNAG	8 cut(s)	437, 582, 1050, 1372, 1570, 2022, 2417, 2528
BstDSI	CCRYGG	2 cut(s)	720, 1226
BstF5I	GGATG	5 cut(s)	306, 697, 1645, 1806, 1885
BstFNI	CGCG	2 cut(s)	139, 722
BstH2I	RGCGCY	2 cut(s)	43, 353
BstHHI	GCGC	4 cut(s)	42, 141, 352, 2478
BstKTI	GATC	9 cut(s)	443, 488, 664, 833, 1492, 1524, 1569, 1576, 1625
BstMAI	GTCTC	4 cut(s)	227, 1777, 2198, 2503
BstMBI	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
BstMCI	CGRYCG	1 cut(s)	137
BstNI	CCWGG	4 cut(s)	969, 1036, 1717, 1941
BstNSI	RCATGY	3 cut(s)	1073, 1952, 2397
BstPAI	GACNNNNGTC	2 cut(s)	86, 198
BstSCI	CCNGG	6 cut(s)	551, 967, 1034, 1715, 1939, 1994
BstSFI	CTRYAG	2 cut(s)	1296, 2328
BstSLI	GKGCMC	2 cut(s)	10, 2518
BstUI	CGCG	2 cut(s)	139, 722
BstV2I	GAAGAC	3 cut(s)	136, 1278, 1914
BstX2I	RGATCY	5 cut(s)	830, 1489, 1521, 1566, 1573
BstXI	CCANNNNNNTGG	2 cut(s)	1168, 2221
BstYI	RGATCY	5 cut(s)	830, 1489, 1521, 1566, 1573
BsuI	GTATCC	2 cut(s)	1546, 1837
BsuRI	GGCC	6 cut(s)	8, 985, 1160, 1653, 1901, 2384
BtgI	CCRYGG	2 cut(s)	720, 1226
BtsCI	GGATG	5 cut(s)	306, 697, 1645, 1806, 1885
BtsI	GCAGTG	1 cut(s)	2553
BtsIMutI	CAGTG	6 cut(s)	32, 535, 664, 2434, 2510, 2553
Cac8I	GCNNGC	3 cut(s)	339, 597, 987
CaiI	CAGNNNCTG	1 cut(s)	1144
CfoI	GCGC	4 cut(s)	42, 141, 352, 2478
Cfr10I	RCCGGY	1 cut(s)	1970
Cfr42I	CCGCGG	1 cut(s)	723
CseI	GACGC	1 cut(s)	203
CsiI	ACCWGGT	1 cut(s)	967
Csp6I	GTAC	4 cut(s)	606, 929, 1002, 2465
CviQI	GTAC	4 cut(s)	606, 929, 1002, 2465
DdeI	CTNAG	8 cut(s)	437, 582, 1050, 1372, 1570, 2022, 2417, 2528
DpnI	GATC	9 cut(s)	442, 487, 663, 832, 1491, 1523, 1568, 1575, 1624
DpnII	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
DraI	TTTAAA	1 cut(s)	1509
DraIII	CACNNNGTG	1 cut(s)	371
DriI	GACNNNNNGTC	1 cut(s)	2165
Eam1104I	CTCTTC	1 cut(s)	537
Eam1105I	GACNNNNNGTC	1 cut(s)	2165
EarI	CTCTTC	1 cut(s)	537
EciI	GGCGGA	2 cut(s)	1579, 2038
Eco130I	CCWWGG	4 cut(s)	687, 1060, 1226, 1548
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	2 cut(s)	227, 2198
Eco32I	GATATC	1 cut(s)	890
Eco47I	GGWCC	4 cut(s)	260, 313, 1610, 2153
Eco57I	CTGAAG	5 cut(s)	56, 1497, 1839, 1941, 2316
Eco88I	CYCGRG	3 cut(s)	564, 1780, 2316
EcoO109I	RGGNCCY	3 cut(s)	7, 1652, 1900
EcoRII	CCWGG	4 cut(s)	967, 1034, 1715, 1939
EcoRV	GATATC	1 cut(s)	890
EcoT14I	CCWWGG	4 cut(s)	687, 1060, 1226, 1548
EcoT22I	ATGCAT	1 cut(s)	1318
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	4 cut(s)	687, 1060, 1226, 1548
Esp3I	CGTCTC	1 cut(s)	2503
FalI	AAGNNNNNCTT	6 cut(s)	1639, 1671, 1713, 1745, 1959, 1991
FaqI	GGGAC	2 cut(s)	74, 2139
FauI	CCCGC	1 cut(s)	715
FauNDI	CATATG	1 cut(s)	1332
FokI	GGATG	5 cut(s)	313, 704, 1652, 1793, 1892
FriOI	GRGCYC	1 cut(s)	10
FspBI	CTAG	8 cut(s)	180, 497, 908, 1245, 1412, 1430, 1578, 2450
FspI	TGCGCA	1 cut(s)	2477
GlaI	GCGC	4 cut(s)	41, 140, 351, 2477
GsaI	CCCAGC	1 cut(s)	1359
GsuI	CTGGAG	1 cut(s)	2478
HaeII	RGCGCY	2 cut(s)	43, 353
HaeIII	GGCC	6 cut(s)	8, 985, 1160, 1653, 1901, 2384
HapII	CCGG	5 cut(s)	552, 926, 1677, 1971, 1996
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	4 cut(s)	42, 141, 352, 2478
Hin1I	GRCGYC	1 cut(s)	702
Hin6I	GCGC	4 cut(s)	40, 139, 350, 2476
HinP1I	GCGC	4 cut(s)	40, 139, 350, 2476
HincII	GTYRAC	1 cut(s)	1208
HindII	GTYRAC	1 cut(s)	1208
HpaII	CCGG	5 cut(s)	552, 926, 1677, 1971, 1996
Hpy166II	GTNNAC	3 cut(s)	1004, 1208, 1234
Hpy188III	TCNNGA	5 cut(s)	114, 326, 407, 1430, 1757
Hpy8I	GTNNAC	3 cut(s)	1004, 1208, 1234
Hpy99I	CGWCG	1 cut(s)	2390
HpyCH4III	ACNGT	9 cut(s)	530, 659, 1001, 1140, 1188, 1391, 1825, 2429, 2505
HpyCH4IV	ACGT	1 cut(s)	702
HpyF3I	CTNAG	8 cut(s)	437, 582, 1050, 1372, 1570, 2022, 2417, 2528
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	1 cut(s)	702
HspAI	GCGC	4 cut(s)	40, 139, 350, 2476
KpnI	GGTACC	1 cut(s)	932
KspI	CCGCGG	1 cut(s)	723
Kzo9I	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
LmnI	GCTCC	5 cut(s)	458, 533, 592, 2224, 2459
LweI	GCATC	7 cut(s)	291, 379, 1303, 1325, 1390, 1471, 1630
MabI	ACCWGGT	1 cut(s)	967
MaeI	CTAG	8 cut(s)	180, 497, 908, 1245, 1412, 1430, 1578, 2450
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	7 cut(s)	175, 182, 191, 672, 1053, 1998, 2191
MalI	GATC	9 cut(s)	442, 487, 663, 832, 1491, 1523, 1568, 1575, 1624
MboI	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
MfeI	CAATTG	2 cut(s)	797, 1305
MflI	RGATCY	5 cut(s)	830, 1489, 1521, 1566, 1573
MhlI	GDGCHC	2 cut(s)	10, 2518
MlyI	GAGTC	7 cut(s)	183, 314, 455, 1286, 1310, 2012, 2211
MmeI	TCCRAC	6 cut(s)	82, 92, 99, 849, 1102, 1915
Mph1103I	ATGCAT	1 cut(s)	1318
MslI	CAYNNNNRTG	3 cut(s)	218, 1074, 1166
MspA1I	CMGCKG	2 cut(s)	722, 947
MspCI	CTTAAG	1 cut(s)	811
MspI	CCGG	5 cut(s)	552, 926, 1677, 1971, 1996
MspR9I	CCNGG	6 cut(s)	553, 969, 1036, 1717, 1941, 1996
MunI	CAATTG	2 cut(s)	797, 1305
Mva1269I	GAATGC	4 cut(s)	865, 1090, 1117, 1343
MvaI	CCWGG	4 cut(s)	969, 1036, 1717, 1941
MvnI	CGCG	2 cut(s)	139, 722
NciI	CCSGG	2 cut(s)	553, 1996
NcoI	CCATGG	1 cut(s)	1226
NdeI	CATATG	1 cut(s)	1332
NdeII	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
NlaIV	GGNNCC	8 cut(s)	8, 9, 535, 930, 1045, 1159, 1663, 2155
NmuCI	GTSAC	3 cut(s)	175, 182, 191
NsbI	TGCGCA	1 cut(s)	2477
NsiI	ATGCAT	1 cut(s)	1318
NspI	RCATGY	3 cut(s)	1073, 1952, 2397
PaeR7I	CTCGAG	2 cut(s)	564, 2316
PasI	CCCWGGG	1 cut(s)	1716
PciI	ACATGT	2 cut(s)	1069, 1948
PctI	GAATGC	4 cut(s)	865, 1090, 1117, 1343
PfeI	GAWTC	7 cut(s)	424, 1258, 1733, 1868, 1916, 2045, 2309
PflFI	GACNNNGTC	1 cut(s)	969
PflMI	CCANNNNNTGG	1 cut(s)	1619
PleI	GAGTC	7 cut(s)	182, 314, 454, 1285, 1309, 2012, 2211
PpsI	GAGTC	7 cut(s)	182, 314, 454, 1285, 1309, 2012, 2211
PscI	ACATGT	2 cut(s)	1069, 1948
PshAI	GACNNNNGTC	2 cut(s)	86, 198
PsiI	TTATAA	1 cut(s)	954
Psp6I	CCWGG	4 cut(s)	967, 1034, 1715, 1939
PspFI	CCCAGC	1 cut(s)	1355
PspGI	CCWGG	4 cut(s)	967, 1034, 1715, 1939
PspN4I	GGNNCC	8 cut(s)	8, 9, 535, 930, 1045, 1159, 1663, 2155
PspOMI	GGGCCC	1 cut(s)	6
PspXI	VCTCGAGB	2 cut(s)	564, 2316
PsrI	GAACNNNNNNTAC	2 cut(s)	2524, 2556
PstI	CTGCAG	2 cut(s)	1300, 2332
PstNI	CAGNNNCTG	1 cut(s)	1144
PsuI	RGATCY	5 cut(s)	830, 1489, 1521, 1566, 1573
PsyI	GACNNNGTC	1 cut(s)	969
PvuII	CAGCTG	1 cut(s)	947
RsaI	GTAC	4 cut(s)	607, 930, 1003, 2466
RsaNI	GTAC	4 cut(s)	606, 929, 1002, 2465
RseI	CAYNNNNRTG	3 cut(s)	218, 1074, 1166
SacII	CCGCGG	1 cut(s)	723
Sau3AI	GATC	9 cut(s)	440, 485, 661, 830, 1489, 1521, 1566, 1573, 1622
SchI	GAGTC	7 cut(s)	183, 314, 455, 1286, 1310, 2012, 2211
ScrFI	CCNGG	6 cut(s)	553, 969, 1036, 1717, 1941, 1996
SduI	GDGCHC	2 cut(s)	10, 2518
SexAI	ACCWGGT	1 cut(s)	967
SfaNI	GCATC	7 cut(s)	291, 379, 1303, 1325, 1390, 1471, 1630
SfcI	CTRYAG	2 cut(s)	1296, 2328
Sfr274I	CTCGAG	2 cut(s)	564, 2316
Sfr303I	CCGCGG	1 cut(s)	723
SgrBI	CCGCGG	1 cut(s)	723
SinI	GGWCC	4 cut(s)	260, 313, 1610, 2153
SlaI	CTCGAG	2 cut(s)	564, 2316
SmiMI	CAYNNNNRTG	3 cut(s)	218, 1074, 1166
SmlI	CTYRAG	9 cut(s)	112, 564, 619, 811, 1422, 1757, 1811, 2081, 2316
SmoI	CTYRAG	9 cut(s)	112, 564, 619, 811, 1422, 1757, 1811, 2081, 2316
SpeI	ACTAGT	1 cut(s)	179
SsiI	CCGC	9 cut(s)	137, 157, 720, 722, 1336, 1564, 1799, 2049, 2249
SspI	AATATT	4 cut(s)	362, 1504, 1533, 2343
SspMI	CTAG	8 cut(s)	180, 497, 908, 1245, 1412, 1430, 1578, 2450
StyD4I	CCNGG	6 cut(s)	551, 967, 1034, 1715, 1939, 1994
StyI	CCWWGG	4 cut(s)	687, 1060, 1226, 1548
TaaI	ACNGT	9 cut(s)	530, 659, 1001, 1140, 1188, 1391, 1825, 2429, 2505
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	5 cut(s)	565, 2016, 2169, 2317, 2388
TatI	WGTACW	1 cut(s)	605
TauI	GCSGC	2 cut(s)	722, 1802
TfiI	GAWTC	7 cut(s)	424, 1258, 1733, 1868, 1916, 2045, 2309
TscAI	CASTG	6 cut(s)	39, 535, 664, 2434, 2510, 2560
TseFI	GTSAC	3 cut(s)	175, 182, 191
Tsp45I	GTSAC	3 cut(s)	175, 182, 191
TspDTI	ATGAA	8 cut(s)	495, 659, 969, 1124, 1191, 1341, 1604, 2510
TspGWI	ACGGA	1 cut(s)	1141
TspRI	CASTG	6 cut(s)	39, 535, 664, 2434, 2510, 2560
Tth111I	GACNNNGTC	1 cut(s)	969
Van91I	CCANNNNNTGG	1 cut(s)	1619
Vha464I	CTTAAG	1 cut(s)	811
VpaK11BI	GGWCC	4 cut(s)	260, 313, 1610, 2153
XapI	RAATTY	2 cut(s)	739, 755
XbaI	TCTAGA	1 cut(s)	1429
XceI	RCATGY	3 cut(s)	1073, 1952, 2397
XhoI	CTCGAG	2 cut(s)	564, 2316
XspI	CTAG	8 cut(s)	180, 497, 908, 1245, 1412, 1430, 1578, 2450
ZraI	GACGTC	1 cut(s)	703
Zsp2I	ATGCAT	1 cut(s)	1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.