pycom16g03700

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016185
Physical Location & Seq
Forward (+)
2300819 .. 2301899
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 768 bp
ATGCCGGAAATGCCCCTCACCAACTCTGTTAAATACACCTCCAATCTCCTCCATTCACATTGTAGTTTGGAGAGAATGAGAATGAGCTGCAACGGATGCAGGGTGCTTCGCAAAGGGTGCAGCGACGAATGCGAGATCAGACCCTGCATTGAGTGGATCAAATCCTCCGAGTCCCAAGCCAACGCCACACTTTTTCTTGCCAAATTCTATGGCCGCGCTGGCCTCCTCAATCTCATCAATGCTGGCTCCCCAGCCCTCCGCCCTGCTATTTTCAAGTCGTTATTGTACGAGGCGTGTGGACGGATCGTGAACCCGACGTACGGCTCGGTGGGTTTGATGTGGTCCGGGGGCTGGGACCAATGCCAGGCAGCCGTTGATGCAGTTCTTGAAGGATCGCCCATCATGGGAATTGATGCGGATGTGCTGAAGCGGAACACGAATCCGAACCTGGATCCTCCTCACAAATCCGGGGACATACGCCACGTGTCCAGGGACACAACCTCGGGCAATTCCTCTCATAACAAAGCTACAACCCGGAACAAGCTCAAGAGGTCCGTGAACCGGCCCAAAATCCAACCAGACTTTGCAACCGGGTCAAACACCAAGAGTTTGGCACAAGTCTGTAATGTTCCAGACCCGGATGACTTGTACCCGATTCCGCAAGGAAACGGGTCTAGGGGAGATCAACAAGCTGCTGATCGATCAAGATGGAGAGGTAGGGTTGGAGCTGACTCTTGGTCTTGGGTTACCTCCTCTAACCCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

256

Amino Acids

27.89

Weight (kDa)

9.11

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 29 - 126 5.9e-20 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67100 AT1G68510
fragaria_vesca FvH4_4g27380
malus_domestica MD16G1042900.v1.1
prunus_persica Prupe.1G311000_v2.0.a1
pyrus_communis pycom16g03700
rosa_chinensis RchiOBHm_Chr4g0435181
rosa_laevigata RLG00000006611
rosa_roxburghii Rroxscaffold_5G00376400
rosa_rugosa Rorug04G0282800
rosa_samantha Rh4AG338600 Rh4BG346700 Rh4CG361300 Rh4DG341100
rosa_wichuraiana Rw4G029530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AciI CCGC 5 cut(s) 214, 259, 416, 430, 659
AclWI GGATC 5 cut(s) 164, 311, 400, 446, 459
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 446
AcvI CACGTG 1 cut(s) 484
AfaI GTAC 3 cut(s) 287, 320, 650
AfiI CCNNNNNNNGG 5 cut(s) 320, 351, 364, 404, 561
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 2 cut(s) 274, 389
AhdI GACNNNNNGTC 1 cut(s) 736
AjnI CCWGG 3 cut(s) 363, 447, 488
AluBI AGCT 5 cut(s) 87, 527, 544, 692, 728
AluI AGCT 5 cut(s) 87, 527, 544, 692, 728
AlwI GGATC 5 cut(s) 164, 311, 400, 446, 459
AlwNI CAGNNNCTG 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 3 cut(s) 211, 220, 563
ApeKI GCWGC 4 cut(s) 87, 120, 368, 692
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 4 cut(s) 342, 355, 552, 564
AsuC2I CCSGG 5 cut(s) 346, 469, 535, 592, 638
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 3 cut(s) 342, 355, 552
BamHI GGATCC 1 cut(s) 451
BbrPI CACGTG 1 cut(s) 484
BbvI GCAGC 4 cut(s) 74, 132, 380, 679
BccI CCATC 2 cut(s) 407, 702
BceAI ACGGC 2 cut(s) 337, 356
BciT130I CCWGG 3 cut(s) 365, 449, 490
BcnI CCSGG 5 cut(s) 346, 469, 535, 592, 638
BfaI CTAG 1 cut(s) 675
BglI GCCNNNNNGGC 1 cut(s) 219
BisI GCNGC 5 cut(s) 88, 121, 214, 369, 693
BlsI GCNGC 5 cut(s) 89, 122, 215, 370, 694
Bme1390I CCNGG 8 cut(s) 346, 365, 449, 469, 490, 535, 592, 638
Bme18I GGWCC 3 cut(s) 342, 355, 552
BmeRI GACNNNNNGTC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 4 cut(s) 342, 355, 552, 564
BmiI GGNNCC 3 cut(s) 247, 356, 453
BmrFI CCNGG 8 cut(s) 346, 365, 449, 469, 490, 535, 592, 638
BmsI GCATC 3 cut(s) 86, 367, 403
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 5 cut(s) 346, 469, 535, 592, 638
Bsa29I ATCGAT 1 cut(s) 700
BsaAI YACGTR 1 cut(s) 484
BsaJI CCNNGG 4 cut(s) 345, 468, 489, 501
Bsc4I CCNNNNNNNGG 5 cut(s) 320, 351, 364, 404, 561
Bse118I RCCGGY 1 cut(s) 561
BseBI CCWGG 3 cut(s) 365, 449, 490
BseCI ATCGAT 1 cut(s) 700
BseDI CCNNGG 4 cut(s) 345, 468, 489, 501
BseGI GGATG 3 cut(s) 101, 424, 646
BseLI CCNNNNNNNGG 5 cut(s) 320, 351, 364, 404, 561
BseRI GAGGAG 4 cut(s) 38, 215, 447, 742
BseXI GCAGC 4 cut(s) 74, 132, 380, 679
BseYI CCCAGC 2 cut(s) 250, 351
BsgI GTGCAG 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 3 cut(s) 213, 222, 565
BshVI ATCGAT 1 cut(s) 700
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 7 cut(s) 5, 345, 468, 535, 562, 591, 638
BsiWI CGTACG 1 cut(s) 318
BslFI GGGAC 4 cut(s) 157, 368, 485, 506
BslI CCNNNNNNNGG 5 cut(s) 320, 351, 364, 404, 561
BsmFI GGGAC 4 cut(s) 157, 368, 485, 506
BsmI GAATGC 1 cut(s) 134
BsnI GGCC 3 cut(s) 213, 222, 565
BsoBI CYCGRG 1 cut(s) 502
Bsp143I GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
BspACI CCGC 5 cut(s) 214, 259, 416, 430, 659
BspANI GGCC 3 cut(s) 213, 222, 565
BspDI ATCGAT 1 cut(s) 700
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 247, 356, 453
BspPI GGATC 5 cut(s) 164, 311, 400, 446, 459
BsrFI RCCGGY 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 4 cut(s) 345, 468, 489, 501
BssMI GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
Bst2UI CCWGG 3 cut(s) 365, 449, 490
BstAPI GCANNNNNTGC 2 cut(s) 96, 117
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 220, 244
BstEII GGTNACC 1 cut(s) 745
BstF5I GGATG 3 cut(s) 101, 424, 646
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 8 cut(s) 138, 159, 306, 395, 454, 685, 700, 704
BstMBI GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
BstMWI GCNNNNNNNGC 6 cut(s) 10, 96, 117, 129, 219, 377
BstNI CCWGG 3 cut(s) 365, 449, 490
BstPI GGTNACC 1 cut(s) 745
BstSCI CCNGG 8 cut(s) 344, 363, 447, 467, 488, 533, 590, 636
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 4 cut(s) 74, 132, 380, 679
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 451
Bsu15I ATCGAT 1 cut(s) 700
BsuRI GGCC 3 cut(s) 213, 222, 565
BsuTUI ATCGAT 1 cut(s) 700
BtsCI GGATG 3 cut(s) 101, 424, 646
Cac8I GCNNGC 2 cut(s) 220, 244
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 4 cut(s) 342, 355, 552, 564
ClaI ATCGAT 1 cut(s) 700
Csp6I GTAC 3 cut(s) 286, 319, 649
CviAII CATG 1 cut(s) 403
CviQI GTAC 3 cut(s) 286, 319, 649
DpnI GATC 8 cut(s) 137, 158, 305, 394, 453, 684, 699, 703
DpnII GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
DriI GACNNNNNGTC 1 cut(s) 736
EaeI YGGCCR 1 cut(s) 211
Eam1105I GACNNNNNGTC 1 cut(s) 736
EciI GGCGGA 1 cut(s) 248
Eco47I GGWCC 3 cut(s) 342, 355, 552
Eco57I CTGAAG 1 cut(s) 446
Eco72I CACGTG 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 502
Eco91I GGTNACC 1 cut(s) 745
EcoO65I GGTNACC 1 cut(s) 745
EcoRII CCWGG 3 cut(s) 363, 447, 488
FaeI CATG 1 cut(s) 406
FaiI YATR 4 cut(s) 210, 404, 476, 519
FaqI GGGAC 4 cut(s) 157, 368, 485, 506
FatI CATG 1 cut(s) 402
Fnu4HI GCNGC 5 cut(s) 88, 121, 214, 369, 693
FokI GGATG 3 cut(s) 108, 431, 653
Fsp4HI GCNGC 5 cut(s) 88, 121, 214, 369, 693
FspBI CTAG 1 cut(s) 675
GlaI GCGC 1 cut(s) 217
GluI GCNGC 5 cut(s) 88, 121, 214, 369, 693
GsaI CCCAGC 2 cut(s) 254, 355
HaeIII GGCC 3 cut(s) 213, 222, 565
HapII CCGG 7 cut(s) 5, 345, 468, 535, 562, 591, 638
HhaI GCGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 4 cut(s) 170, 439, 655, 731
HpaII CCGG 7 cut(s) 5, 345, 468, 535, 562, 591, 638
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 3 cut(s) 299, 310, 559
Hpy188I TCNGA 3 cut(s) 140, 169, 444
Hpy188III TCNNGA 5 cut(s) 307, 386, 547, 632, 705
Hpy8I GTNNAC 3 cut(s) 299, 310, 559
Hpy99I CGWCG 2 cut(s) 128, 319
HpyAV CCTTC 1 cut(s) 383
HpyCH4IV ACGT 2 cut(s) 317, 483
HpyCH4V TGCA 6 cut(s) 90, 99, 120, 147, 380, 587
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 96, 117, 129, 219, 377
HpySE526I ACGT 2 cut(s) 317, 483
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 1 cut(s) 216
Kzo9I GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
LmnI GCTCC 2 cut(s) 251, 725
Lsp1109I GCAGC 4 cut(s) 74, 132, 380, 679
LweI GCATC 3 cut(s) 86, 367, 403
MaeI CTAG 1 cut(s) 675
MaeII ACGT 2 cut(s) 317, 483
MaeIII GTNAC 1 cut(s) 745
MalI GATC 8 cut(s) 137, 158, 305, 394, 453, 684, 699, 703
MboI GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
MflI RGATCY 1 cut(s) 451
MluCI AATT 3 cut(s) 203, 408, 508
MlyI GAGTC 2 cut(s) 179, 725
MmeI TCCRAC 2 cut(s) 598, 703
MseI TTAA 2 cut(s) 30, 766
MspI CCGG 7 cut(s) 5, 345, 468, 535, 562, 591, 638
MspR9I CCNGG 8 cut(s) 346, 365, 449, 469, 490, 535, 592, 638
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 3 cut(s) 365, 449, 490
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 6 cut(s) 10, 96, 117, 129, 219, 377
NciI CCSGG 5 cut(s) 346, 469, 535, 592, 638
NdeII GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 3 cut(s) 247, 356, 453
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 439, 655
Pfl23II CGTACG 1 cut(s) 318
PkrI GCNGC 5 cut(s) 89, 122, 215, 370, 694
PleI GAGTC 2 cut(s) 178, 725
PmaCI CACGTG 1 cut(s) 484
PmlI CACGTG 1 cut(s) 484
PpsI GAGTC 2 cut(s) 178, 725
Ppu21I YACGTR 1 cut(s) 484
Psp6I CCWGG 3 cut(s) 363, 447, 488
PspCI CACGTG 1 cut(s) 484
PspEI GGTNACC 1 cut(s) 745
PspFI CCCAGC 2 cut(s) 250, 351
PspGI CCWGG 3 cut(s) 363, 447, 488
PspLI CGTACG 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 247, 356, 453
PspPI GGNCC 4 cut(s) 342, 355, 552, 564
PsrI GAACNNNNNNTAC 2 cut(s) 302, 334
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 3 cut(s) 287, 320, 650
RsaNI GTAC 3 cut(s) 286, 319, 649
SaqAI TTAA 2 cut(s) 30, 766
SatI GCNGC 5 cut(s) 88, 121, 214, 369, 693
Sau3AI GATC 8 cut(s) 135, 156, 303, 392, 451, 682, 697, 701
Sau96I GGNCC 4 cut(s) 342, 355, 552, 564
SchI GAGTC 2 cut(s) 179, 725
ScrFI CCNGG 8 cut(s) 346, 365, 449, 469, 490, 535, 592, 638
SfaNI GCATC 3 cut(s) 86, 367, 403
SfiI GGCCNNNNNGGCC 1 cut(s) 219
SinI GGWCC 3 cut(s) 342, 355, 552
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 203, 408, 508
SsiI CCGC 5 cut(s) 214, 259, 416, 430, 659
SspMI CTAG 1 cut(s) 675
StyD4I CCNGG 8 cut(s) 344, 363, 447, 467, 488, 533, 590, 636
TaiI ACGT 2 cut(s) 320, 486
TaqI TCGA 1 cut(s) 700
TasI AATT 3 cut(s) 203, 408, 508
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 2 cut(s) 439, 655
Tru1I TTAA 2 cut(s) 30, 766
Tru9I TTAA 2 cut(s) 30, 766
TseI GCWGC 4 cut(s) 87, 120, 368, 692
TspGWI ACGGA 3 cut(s) 108, 316, 544
VpaK11BI GGWCC 3 cut(s) 342, 355, 552
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.