pycom16g04190

leucine-rich repeat receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0019689
Physical Location & Seq
Reverse (-)
2597849 .. 2598953
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGTGCTCCCCTTGGCCCGACGACCTCGCCCGAACCGGCGCATACTCGGATTTATTCGCTTTCGTCGCCGACTCCAACGCCGATGTCTGCTTCCACAGCATTGCCAATGGCGCTCCCGTAATCGGATCTCTCATGCTCGTTCGGGTAGACGAGACCTCATACGACGGGGTTTCCATCGGCCAAAACTACATCCTCGTAAACTACGGGCGGTTCTCCTGCGGCGCCGATCCGTTTGGCCCCGGCTTCACCAACGACACCGACCTATTCGGTCTACCGGCGCCGAATCCTCACCCCGAACTATTTCCCGGCAAACTGTACCAATCGGCGGCGGTTGTCGAGGGGGAAGGAGTCATAGTGTACGAATTACCGGTGGACGTGGAGCTGGACTACTTCCCGTGGCTACATTTCGCGGAAATCGATCCGGGAGTGACAGAGGCGGGGCAGAGAGTGTTCGACGGGGTGGGGAGCTTCGCGGCGTACTCGTGGAGTTATAGAGTGAAGAACTTGATCAGTACGGTGTTGACGGTGGAGCTTCAGAGTGTGGCCGGCACGGCGTTGATTTGTGGGCTAGAGAACTACGCTCTCGTTCCCGCCAATAAATTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

203

Amino Acids

21.71

Weight (kDa)

4.15

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 13 - 78 1.5e-06 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019689)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39050 FvH4_5g07980 FvH4_5g07980
pyrus_communis pycom16g04190
rosa_chinensis RchiOBHm_Chr2g0134681
rosa_roxburghii Rroxscaffold_2G00102990 Rroxscaffold_7G00192900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 221, 277
AccI GTMKAC 2 cut(s) 147, 271
AccII CGCG 2 cut(s) 410, 473
AciI CCGC 8 cut(s) 208, 219, 326, 329, 410, 437, 473, 591
AclWI GGATC 3 cut(s) 133, 221, 413
AcoI YGGCCR 2 cut(s) 178, 543
AcuI CTGAAG 1 cut(s) 518
AcyI GRCGYC 2 cut(s) 222, 278
AfaI GTAC 4 cut(s) 317, 359, 479, 514
AfiI CCNNNNNNNGG 2 cut(s) 122, 325
AgeI ACCGGT 1 cut(s) 367
AjiI CACGTC 1 cut(s) 376
AluBI AGCT 3 cut(s) 382, 468, 532
AluI AGCT 3 cut(s) 382, 468, 532
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 3 cut(s) 133, 221, 413
AoxI GGCC 4 cut(s) 14, 178, 235, 543
AsiGI ACCGGT 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 4 cut(s) 41, 113, 224, 280
AspS9I GGNCC 2 cut(s) 15, 236
AsuC2I CCSGG 3 cut(s) 240, 306, 423
AsuHPI GGTGA 2 cut(s) 238, 281
BanI GGYRCC 2 cut(s) 221, 277
BauI CACGAG 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 567
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 3 cut(s) 240, 306, 423
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 1 cut(s) 569
BfoI RGCGCY 3 cut(s) 114, 225, 281
BglI GCCNNNNNGGC 1 cut(s) 551
BisI GCNGC 3 cut(s) 220, 327, 474
BlsI GCNGC 3 cut(s) 221, 328, 475
Bme1390I CCNGG 3 cut(s) 240, 306, 423
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 15, 236
BmiI GGNNCC 3 cut(s) 223, 238, 279
BmrFI CCNGG 3 cut(s) 240, 306, 423
BpuMI CCSGG 3 cut(s) 240, 306, 423
Bsa29I ATCGAT 1 cut(s) 417
BsaHI GRCGYC 2 cut(s) 222, 278
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 11, 238, 395
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 325
Bse118I RCCGGY 4 cut(s) 35, 274, 367, 545
Bse3DI GCAATG 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 11, 238, 395
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 122, 325
BseMI GCAATG 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 410, 473
BshFI GGCC 4 cut(s) 16, 180, 237, 545
BshNI GGYRCC 2 cut(s) 221, 277
BshTI ACCGGT 1 cut(s) 367
BshVI ATCGAT 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
BslI CCNNNNNNNGG 2 cut(s) 122, 325
BsmAI GTCTC 1 cut(s) 146
BsnI GGCC 4 cut(s) 16, 180, 237, 545
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 125, 226, 418, 507
BspACI CCGC 8 cut(s) 208, 219, 326, 329, 410, 437, 473, 591
BspANI GGCC 4 cut(s) 16, 180, 237, 545
BspDI ATCGAT 1 cut(s) 417
BspFNI CGCG 2 cut(s) 410, 473
BspLI GGNNCC 3 cut(s) 223, 238, 279
BspPI GGATC 3 cut(s) 133, 221, 413
BspT107I GGYRCC 2 cut(s) 221, 277
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 4 cut(s) 35, 274, 367, 545
BssAI RCCGGY 4 cut(s) 35, 274, 367, 545
BssECI CCNNGG 3 cut(s) 11, 238, 395
BssMI GATC 4 cut(s) 125, 226, 418, 507
BssNI GRCGYC 2 cut(s) 222, 278
BssSI CACGAG 1 cut(s) 481
BssT1I CCWWGG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 315, 517, 526
BstACI GRCGYC 2 cut(s) 222, 278
BstC8I GCNNGC 1 cut(s) 547
BstDSI CCRYGG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 410, 473
BstH2I RGCGCY 3 cut(s) 114, 225, 281
BstHHI GCGC 4 cut(s) 41, 113, 224, 280
BstKTI GATC 4 cut(s) 128, 229, 421, 510
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 125, 226, 418, 507
BstMWI GCNNNNNNNGC 4 cut(s) 65, 96, 110, 551
BstSCI CCNGG 3 cut(s) 238, 304, 421
BstUI CGCG 2 cut(s) 410, 473
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 417
BsuRI GGCC 4 cut(s) 16, 180, 237, 545
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 547
CfoI GCGC 4 cut(s) 41, 113, 224, 280
Cfr10I RCCGGY 4 cut(s) 35, 274, 367, 545
Cfr13I GGNCC 2 cut(s) 15, 236
ClaI ATCGAT 1 cut(s) 417
Csp6I GTAC 4 cut(s) 316, 358, 478, 513
CspAI ACCGGT 1 cut(s) 367
CviAII CATG 1 cut(s) 133
CviQI GTAC 4 cut(s) 316, 358, 478, 513
DinI GGCGCC 2 cut(s) 223, 279
DpnI GATC 4 cut(s) 127, 228, 420, 509
DpnII GATC 4 cut(s) 125, 226, 418, 507
EaeI YGGCCR 2 cut(s) 178, 543
Eco130I CCWWGG 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 11
EgeI GGCGCC 2 cut(s) 223, 279
EheI GGCGCC 2 cut(s) 223, 279
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 136
FaiI YATR 6 cut(s) 43, 134, 160, 353, 492, 607
FatI CATG 1 cut(s) 132
FauI CCCGC 2 cut(s) 430, 598
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 2 cut(s) 147, 271
Fnu4HI GCNGC 3 cut(s) 220, 327, 474
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 3 cut(s) 220, 327, 474
FspBI CTAG 1 cut(s) 569
GlaI GCGC 4 cut(s) 40, 112, 223, 279
GluI GCNGC 3 cut(s) 220, 327, 474
HaeII RGCGCY 3 cut(s) 114, 225, 281
HaeIII GGCC 4 cut(s) 16, 180, 237, 545
HapII CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
HhaI GCGC 4 cut(s) 41, 113, 224, 280
Hin1I GRCGYC 2 cut(s) 222, 278
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 4 cut(s) 39, 111, 222, 278
HinP1I GCGC 4 cut(s) 39, 111, 222, 278
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 3 cut(s) 71, 283, 348
HpaII CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
HphI GGTGA 2 cut(s) 238, 281
Hpy166II GTNNAC 6 cut(s) 148, 199, 272, 358, 373, 522
Hpy188I TCNGA 3 cut(s) 49, 125, 537
Hpy8I GTNNAC 6 cut(s) 148, 199, 272, 358, 373, 522
Hpy99I CGWCG 4 cut(s) 23, 68, 167, 458
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 315, 517, 526
HpyCH4IV ACGT 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 96, 110, 551
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 2 cut(s) 222, 278
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 4 cut(s) 39, 111, 222, 278
KasI GGCGCC 2 cut(s) 221, 277
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 125, 226, 418, 507
LmnI GCTCC 5 cut(s) 11, 118, 379, 465, 529
LpnPI CCDG 9 cut(s) 49, 229, 253, 288, 319, 368, 381, 435, 559
MaeI CTAG 1 cut(s) 569
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 427
MalI GATC 4 cut(s) 127, 228, 420, 509
MboI GATC 4 cut(s) 125, 226, 418, 507
MboII GAAGA 1 cut(s) 511
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 2 cut(s) 362, 599
Mly113I GGCGCC 2 cut(s) 222, 278
MlyI GAGTC 2 cut(s) 65, 357
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 6 cut(s) 35, 166, 203, 297, 331, 427
MroNI GCCGGC 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 300
MspI CCGG 7 cut(s) 36, 240, 275, 306, 368, 422, 546
MspR9I CCNGG 3 cut(s) 240, 306, 423
MvnI CGCG 2 cut(s) 410, 473
MwoI GCNNNNNNNGC 4 cut(s) 65, 96, 110, 551
NaeI GCCGGC 1 cut(s) 547
NarI GGCGCC 2 cut(s) 222, 278
NciI CCSGG 3 cut(s) 240, 306, 423
NdeII GATC 4 cut(s) 125, 226, 418, 507
NgoMIV GCCGGC 1 cut(s) 545
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 3 cut(s) 223, 238, 279
NmuCI GTSAC 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 421
PinAI ACCGGT 1 cut(s) 367
PkrI GCNGC 3 cut(s) 221, 328, 475
PleI GAGTC 2 cut(s) 65, 356
PluTI GGCGCC 2 cut(s) 225, 281
PpsI GAGTC 2 cut(s) 65, 356
PspN4I GGNNCC 3 cut(s) 223, 238, 279
PspPI GGNCC 2 cut(s) 15, 236
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 4 cut(s) 317, 359, 479, 514
RsaNI GTAC 4 cut(s) 316, 358, 478, 513
SatI GCNGC 3 cut(s) 220, 327, 474
Sau3AI GATC 4 cut(s) 125, 226, 418, 507
Sau96I GGNCC 2 cut(s) 15, 236
SchI GAGTC 2 cut(s) 65, 357
ScrFI CCNGG 3 cut(s) 240, 306, 423
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 27, 158, 264, 378, 384, 470, 534
SfoI GGCGCC 2 cut(s) 223, 279
Sse9I AATT 2 cut(s) 362, 599
SsiI CCGC 8 cut(s) 208, 219, 326, 329, 410, 437, 473, 591
SspDI GGCGCC 2 cut(s) 221, 277
SspMI CTAG 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 238, 304, 421
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 3 cut(s) 315, 517, 526
TaiI ACGT 1 cut(s) 378
TaqI TCGA 3 cut(s) 336, 417, 453
TaqII GACCGA 1 cut(s) 257
TasI AATT 2 cut(s) 362, 599
TauI GCSGC 3 cut(s) 222, 329, 476
TfiI GAWTC 1 cut(s) 283
TseFI GTSAC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 427
TspGWI ACGGA 1 cut(s) 219
XmiI GTMKAC 2 cut(s) 147, 271
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.