Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015022

Physical Location & Seq

Genomic Coordinates Forward (+)

4770384 .. 4771556

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTCCCATTCCGGCTATACGCCGCCGTCTTGTTCGTCTTCAGTATCTCCCTCCTCCTTCCCCCGTTCTGCATCGGGATTCGCTCATTCCCGACGAGGGCGATCGACGGCGGGGATGCCTTTGAACTCGGCTCCGCCGCCTGGGCCCGATTCTCCGAAGCCCCCGACTACCGAAACGGCGCCGGATGCGCCGTTTCGTTGAACCGGGAAATGGTGTCCTCCTGCGACCCCTGCCGGTCTCTGCACCCTGGTCCGGTCAGTCTCCTCCATTGGAGCGGCAAGGGCAAGCCGTGGGTCAGACTCGAAACCAAGAACCCGTGCCCGCTGGACCACCTCTGGGTGCCGTACGATCTCTACAAGCCGATCCACCAGCTCAACCCGGCGAAGTTTCAATCTTTATCGTCGGTTTCTGCATCTACATTGATCGGGTTTTCCAGCTATTTGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

150

Amino Acids

16.4

Weight (kDa)

8.67

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70090 AT1G70090
fragaria_vesca	FvH4_4g35260
prunus_persica	Prupe.1G262000_v2.0.a1
pyrus_communis	pycom13g07340 pycom16g07300
rosa_chinensis	RchiOBHm_Chr4g0444871
rosa_laevigata	RLG00000005793
rosa_multiflora	Rmu_sc0006845.1_g000006
rosa_roxburghii	Rroxscaffold_5G00385360
rosa_rugosa	Rorug04G0355800
rosa_samantha	Rh4AG417300 Rh4BG429100 Rh4CG443800 Rh4DG425000
rosa_wichuraiana	Rw4G035770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 340
AccBSI	CCGCTC	1 cut(s)	276
AciI	CCGC	6 cut(s)	24, 111, 135, 138, 276, 323
AclWI	GGATC	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	5 cut(s)	97, 141, 211, 253, 337
AgsI	TTSAA	3 cut(s)	125, 202, 392
AjnI	CCWGG	2 cut(s)	140, 247
AluBI	AGCT	2 cut(s)	373, 438
AluI	AGCT	2 cut(s)	373, 438
Alw26I	GTCTC	2 cut(s)	243, 266
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	144
ApaI	GGGCCC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	182, 191
AspS9I	GGNCC	4 cut(s)	144, 145, 251, 328
AsuC2I	CCSGG	2 cut(s)	206, 380
AvaII	GGWCC	2 cut(s)	251, 328
BaeGI	GKGCMC	2 cut(s)	148, 323
BanI	GGYRCC	2 cut(s)	179, 340
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	31
BceAI	ACGGC	6 cut(s)	11, 124, 176, 193, 274, 328
BciT130I	CCWGG	2 cut(s)	142, 249
BcnI	CCSGG	2 cut(s)	206, 380
BcoDI	GTCTC	2 cut(s)	243, 266
BfoI	RGCGCY	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	3 cut(s)	24, 138, 277
BlsI	GCNGC	3 cut(s)	25, 139, 278
Bme1390I	CCNGG	4 cut(s)	142, 206, 249, 380
Bme18I	GGWCC	2 cut(s)	251, 328
BmgT120I	GGNCC	4 cut(s)	144, 145, 251, 328
BmiI	GGNNCC	4 cut(s)	133, 146, 181, 342
BmrFI	CCNGG	4 cut(s)	142, 206, 249, 380
BmsI	GCATC	4 cut(s)	81, 106, 176, 422
BpiI	GAAGAC	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	206, 380
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	141, 247, 290
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 141, 211, 253, 337
Bse118I	RCCGGY	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	142, 249
BseDI	CCNNGG	3 cut(s)	141, 247, 290
BseGI	GGATG	2 cut(s)	121, 191
BseLI	CCNNNNNNNGG	5 cut(s)	97, 141, 211, 253, 337
BseRI	GAGGAG	2 cut(s)	44, 254
BseSI	GKGCMC	2 cut(s)	148, 323
BsgI	GTGCAG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	2 cut(s)	179, 340
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	6 cut(s)	13, 183, 205, 235, 254, 380
BsiWI	CGTACG	1 cut(s)	345
BslI	CCNNNNNNNGG	5 cut(s)	97, 141, 211, 253, 337
BsmAI	GTCTC	2 cut(s)	243, 266
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	243
Bsp120I	GGGCCC	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	148, 323
Bsp143I	GATC	4 cut(s)	102, 349, 363, 423
BspACI	CCGC	6 cut(s)	24, 111, 135, 138, 276, 323
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	4 cut(s)	133, 146, 181, 342
BspPI	GGATC	1 cut(s)	358
BspT107I	GGYRCC	2 cut(s)	179, 340
BspTNI	GGTCTC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	141, 247, 290
BssMI	GATC	4 cut(s)	102, 349, 363, 423
BssNI	GRCGYC	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	142, 249
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	287, 323
BstDSI	CCRYGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	121, 191
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	182, 191
BstKTI	GATC	4 cut(s)	105, 352, 366, 426
BstMAI	GTCTC	2 cut(s)	243, 266
BstMBI	GATC	4 cut(s)	102, 349, 363, 423
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 186, 188, 231, 282
BstNI	CCWGG	2 cut(s)	142, 249
BstSCI	CCNGG	4 cut(s)	140, 204, 247, 378
BstSLI	GKGCMC	2 cut(s)	148, 323
BstV2I	GAAGAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	121, 191
Cac8I	GCNNGC	2 cut(s)	287, 323
CfoI	GCGC	2 cut(s)	182, 191
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	4 cut(s)	144, 145, 251, 328
Csp6I	GTAC	1 cut(s)	346
CviJI	RGCY	8 cut(s)	16, 132, 146, 161, 289, 361, 373, 438
CviKI_1	RGCY	8 cut(s)	16, 132, 146, 161, 289, 361, 373, 438
CviQI	GTAC	1 cut(s)	346
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	4 cut(s)	104, 351, 365, 425
DpnII	GATC	4 cut(s)	102, 349, 363, 423
EciI	GGCGGA	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	251, 328
Eco57I	CTGAAG	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	140, 247
EcoT38I	GRGCYC	1 cut(s)	148
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
FaiI	YATR	1 cut(s)	19
FauI	CCCGC	2 cut(s)	104, 330
Fnu4HI	GCNGC	3 cut(s)	24, 138, 277
FokI	GGATG	2 cut(s)	128, 198
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	3 cut(s)	24, 138, 277
GlaI	GCGC	2 cut(s)	181, 190
GluI	GCNGC	3 cut(s)	24, 138, 277
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	6 cut(s)	13, 183, 205, 235, 254, 380
HhaI	GCGC	2 cut(s)	182, 191
Hin1I	GRCGYC	1 cut(s)	180
Hin6I	GCGC	2 cut(s)	180, 189
HinP1I	GCGC	2 cut(s)	180, 189
HinfI	GANTC	3 cut(s)	79, 150, 300
HpaII	CCGG	6 cut(s)	13, 183, 205, 235, 254, 380
Hpy188I	TCNGA	2 cut(s)	157, 299
Hpy188III	TCNNGA	3 cut(s)	76, 91, 447
Hpy99I	CGWCG	3 cut(s)	97, 110, 406
HpyAV	CCTTC	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	72, 244, 413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 186, 188, 231, 282
Hsp92I	GRCGYC	1 cut(s)	180
HspAI	GCGC	2 cut(s)	180, 189
KasI	GGCGCC	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	102, 349, 363, 423
LmnI	GCTCC	3 cut(s)	9, 137, 273
LweI	GCATC	4 cut(s)	81, 106, 176, 422
MalI	GATC	4 cut(s)	104, 351, 365, 425
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	4 cut(s)	102, 349, 363, 423
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	148, 323
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	62, 65, 90, 229, 275, 344
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	6 cut(s)	13, 183, 205, 235, 254, 380
MspR9I	CCNGG	4 cut(s)	142, 206, 249, 380
MvaI	CCWGG	2 cut(s)	142, 249
MwoI	GCNNNNNNNGC	5 cut(s)	143, 186, 188, 231, 282
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	206, 380
NdeII	GATC	4 cut(s)	102, 349, 363, 423
NlaIV	GGNNCC	4 cut(s)	133, 146, 181, 342
NmeAIII	GCCGAG	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	79, 150
Pfl23II	CGTACG	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	25, 139, 278
Ple19I	CGATCG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	294
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	140, 247
PspGI	CCWGG	2 cut(s)	140, 247
PspLI	CGTACG	1 cut(s)	345
PspN4I	GGNNCC	4 cut(s)	133, 146, 181, 342
PspOMI	GGGCCC	1 cut(s)	144
PspPI	GGNCC	4 cut(s)	144, 145, 251, 328
PvuI	CGATCG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SatI	GCNGC	3 cut(s)	24, 138, 277
Sau3AI	GATC	4 cut(s)	102, 349, 363, 423
Sau96I	GGNCC	4 cut(s)	144, 145, 251, 328
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	4 cut(s)	142, 206, 249, 380
SduI	GDGCHC	2 cut(s)	148, 323
SetI	ASST	3 cut(s)	336, 375, 440
SfaNI	GCATC	4 cut(s)	81, 106, 176, 422
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	2 cut(s)	251, 328
SsiI	CCGC	6 cut(s)	24, 111, 135, 138, 276, 323
SspDI	GGCGCC	1 cut(s)	179
StyD4I	CCNGG	4 cut(s)	140, 204, 247, 378
TaqI	TCGA	2 cut(s)	105, 303
TauI	GCSGC	3 cut(s)	26, 140, 279
TfiI	GAWTC	2 cut(s)	79, 150
VpaK11BI	GGWCC	2 cut(s)	251, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.