Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Forward (+)

5087496 .. 5088789

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACTCGGGTTTATGTTGGGAATTTGGATCCTCGAGTGAACGAGAGGGATCTAGAAGATGAATTTCGGCTGTTCGGTGTTCTTCGCAATGTATGGGTTGCACGAAGACCGCCGGGATACGCATTTATTGAATTCGACGATCGCAGGGATGCTTTAGACGCGGTTCAAGCTTTGGATGGTAAAAATGGGTGGCGTGTGGAGCTTTCCCACAATTCTAAGGGTAGTGGAGGCCGTGGGCGCGGTGGAGGAGATGACTTAAAGTGTTATGAGTGCGGTGAACCTGGCCATTTTGCTCGAGAATGTCGCATGCGTGTTGGTTCACGAGGAGGGAGTGGTGGAAGGCGCCGAAGTCCATCCCCTCGACGCCGCAGAAGTCCTAGTTATGATGGCCATGGGCGCAGGAGTTATAGTCCGCGTAGGAGAAGATCACCTCCACGACGCCGTAGTGTCACACCTCCTCGACGTGGACGCAGCTACAGCAGGTCTCCTCCATATCGCCATGCTCGCCGTGCTTCACCTTATGTCAATGGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

179

Amino Acids

20.38

Weight (kDa)

11.37

Isoelectric Point (pI)

109.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	1.5e-15	RNA recognition motif
zf-CCHC	PF00098	87 - 102	1.2e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	342
AccII	CGCG	3 cut(s)	161, 240, 415
AciI	CCGC	6 cut(s)	110, 161, 240, 273, 367, 413
AclWI	GGATC	3 cut(s)	23, 36, 57
AcoI	YGGCCR	2 cut(s)	283, 388
AcsI	RAATTY	3 cut(s)	22, 62, 131
AcyI	GRCGYC	3 cut(s)	343, 364, 439
AfiI	CCNNNNNNNGG	1 cut(s)	464
AgsI	TTSAA	2 cut(s)	131, 167
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	170, 202, 474
AluI	AGCT	3 cut(s)	170, 202, 474
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	23, 36, 57
Ama87I	CYCGRG	3 cut(s)	6, 33, 294
AoxI	GGCC	3 cut(s)	229, 283, 388
ApeKI	GCWGC	1 cut(s)	471
ApoI	RAATTY	3 cut(s)	22, 62, 131
AspLEI	GCGC	3 cut(s)	240, 345, 399
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	3 cut(s)	287, 420, 507
AvaI	CYCGRG	3 cut(s)	6, 33, 294
BalI	TGGCCA	2 cut(s)	285, 390
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	342
BauI	CACGAG	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	170, 361, 380
BceAI	ACGGC	3 cut(s)	216, 426, 492
BciT130I	CCWGG	1 cut(s)	282
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	2 cut(s)	53, 378
BfmI	CTRYAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	346
BfuAI	ACCTGC	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	2 cut(s)	367, 472
BlsI	GCNGC	2 cut(s)	368, 473
Bme1390I	CCNGG	2 cut(s)	114, 282
BmeT110I	CYCGRG	3 cut(s)	6, 33, 294
BmgBI	CACGTC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	30, 344
BmrFI	CCNGG	2 cut(s)	114, 282
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	3 cut(s)	343, 364, 439
BsaI	GGTCTC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	232, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	232, 391
BseGI	GGATG	3 cut(s)	154, 181, 353
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMI	GCAATG	1 cut(s)	94
BseRI	GAGGAG	4 cut(s)	261, 339, 447, 477
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	3 cut(s)	161, 240, 415
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	3 cut(s)	231, 285, 390
BshNI	GGYRCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	3 cut(s)	6, 33, 294
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	231, 285, 390
Bso31I	GGTCTC	1 cut(s)	489
BsoBI	CYCGRG	3 cut(s)	6, 33, 294
Bsp143I	GATC	4 cut(s)	28, 49, 139, 425
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	6 cut(s)	110, 161, 240, 273, 367, 413
BspANI	GGCC	3 cut(s)	231, 285, 390
BspFNI	CGCG	3 cut(s)	161, 240, 415
BspLI	GGNNCC	2 cut(s)	30, 344
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	3 cut(s)	23, 36, 57
BspT107I	GGYRCC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	232, 391
BssMI	GATC	4 cut(s)	28, 49, 139, 425
BssNI	GRCGYC	3 cut(s)	343, 364, 439
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	282
BstACI	GRCGYC	3 cut(s)	343, 364, 439
BstC8I	GCNNGC	2 cut(s)	308, 505
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	2 cut(s)	232, 391
BstF5I	GGATG	3 cut(s)	154, 181, 353
BstFNI	CGCG	3 cut(s)	161, 240, 415
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	3 cut(s)	240, 345, 399
BstKTI	GATC	4 cut(s)	31, 52, 142, 428
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	4 cut(s)	28, 49, 139, 425
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	8 cut(s)	158, 167, 199, 237, 396, 477, 504, 509
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	112, 280
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	3 cut(s)	161, 240, 415
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	28, 49
BstYI	RGATCY	2 cut(s)	28, 49
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	231, 285, 390
BtgI	CCRYGG	2 cut(s)	232, 391
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	3 cut(s)	154, 181, 353
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	308, 505
CfoI	GCGC	3 cut(s)	240, 345, 399
CseI	GACGC	4 cut(s)	167, 372, 447, 477
CviAII	CATG	3 cut(s)	307, 392, 500
CviJI	RGCY	7 cut(s)	70, 170, 202, 231, 285, 390, 474
CviKI_1	RGCY	7 cut(s)	70, 170, 202, 231, 285, 390, 474
DdeI	CTNAG	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	344
DpnI	GATC	4 cut(s)	30, 51, 141, 427
DpnII	GATC	4 cut(s)	28, 49, 139, 425
EaeI	YGGCCR	2 cut(s)	283, 388
Eco130I	CCWWGG	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	489
Eco88I	CYCGRG	3 cut(s)	6, 33, 294
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	391
EgeI	GGCGCC	1 cut(s)	344
EheI	GGCGCC	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	3 cut(s)	310, 395, 503
FatI	CATG	3 cut(s)	306, 391, 499
Fnu4HI	GCNGC	2 cut(s)	367, 472
FokI	GGATG	3 cut(s)	161, 188, 340
Fsp4HI	GCNGC	2 cut(s)	367, 472
FspBI	CTAG	2 cut(s)	53, 378
GlaI	GCGC	3 cut(s)	239, 344, 398
GluI	GCNGC	2 cut(s)	367, 472
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	3 cut(s)	231, 285, 390
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	4 cut(s)	167, 372, 447, 477
HhaI	GCGC	3 cut(s)	240, 345, 399
Hin1I	GRCGYC	3 cut(s)	343, 364, 439
Hin1II	CATG	3 cut(s)	310, 395, 503
Hin6I	GCGC	3 cut(s)	238, 343, 397
HinP1I	GCGC	3 cut(s)	238, 343, 397
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	3 cut(s)	287, 420, 507
Hpy166II	GTNNAC	4 cut(s)	40, 278, 320, 467
Hpy188III	TCNNGA	3 cut(s)	53, 296, 321
Hpy8I	GTNNAC	4 cut(s)	40, 278, 320, 467
Hpy99I	CGWCG	4 cut(s)	140, 366, 441, 465
HpyAV	CCTTC	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	8 cut(s)	158, 167, 199, 237, 396, 477, 504, 509
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	3 cut(s)	343, 364, 439
Hsp92II	CATG	3 cut(s)	310, 395, 503
HspAI	GCGC	3 cut(s)	238, 343, 397
KasI	GGCGCC	1 cut(s)	342
Kzo9I	GATC	4 cut(s)	28, 49, 139, 425
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	126, 130, 267, 294, 385, 466
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	53, 378
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	4 cut(s)	30, 51, 141, 427
MboI	GATC	4 cut(s)	28, 49, 139, 425
MboII	GAAGA	4 cut(s)	68, 74, 117, 435
MflI	RGATCY	2 cut(s)	28, 49
MlsI	TGGCCA	2 cut(s)	285, 390
MluCI	AATT	4 cut(s)	22, 62, 131, 211
MluNI	TGGCCA	2 cut(s)	285, 390
Mly113I	GGCGCC	1 cut(s)	343
Mox20I	TGGCCA	2 cut(s)	285, 390
MscI	TGGCCA	2 cut(s)	285, 390
MseI	TTAA	1 cut(s)	257
Msp20I	TGGCCA	2 cut(s)	285, 390
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	114, 282
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	3 cut(s)	161, 240, 415
MwoI	GCNNNNNNNGC	8 cut(s)	158, 167, 199, 237, 396, 477, 504, 509
NarI	GGCGCC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	4 cut(s)	28, 49, 139, 425
NlaIII	CATG	3 cut(s)	310, 395, 503
NlaIV	GGNNCC	2 cut(s)	30, 344
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	310
PaeI	GCATGC	1 cut(s)	310
PaeR7I	CTCGAG	2 cut(s)	33, 294
PkrI	GCNGC	2 cut(s)	368, 473
Ple19I	CGATCG	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	30, 344
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	28, 49
PvuI	CGATCG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	2 cut(s)	367, 472
Sau3AI	GATC	4 cut(s)	28, 49, 139, 425
ScrFI	CCNGG	2 cut(s)	114, 282
SetI	ASST	9 cut(s)	172, 204, 283, 433, 457, 466, 476, 485, 520
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	475
SfoI	GGCGCC	1 cut(s)	344
Sfr274I	CTCGAG	2 cut(s)	33, 294
SlaI	CTCGAG	2 cut(s)	33, 294
SmlI	CTYRAG	2 cut(s)	33, 294
SmoI	CTYRAG	2 cut(s)	33, 294
SphI	GCATGC	1 cut(s)	310
Sse9I	AATT	4 cut(s)	22, 62, 131, 211
SsiI	CCGC	6 cut(s)	110, 161, 240, 273, 367, 413
SspDI	GGCGCC	1 cut(s)	342
SspMI	CTAG	2 cut(s)	53, 378
StyD4I	CCNGG	2 cut(s)	112, 280
StyI	CCWWGG	1 cut(s)	391
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	5 cut(s)	34, 135, 295, 361, 460
TasI	AATT	4 cut(s)	22, 62, 131, 211
TauI	GCSGC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	471
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	75
XapI	RAATTY	3 cut(s)	22, 62, 131
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	310
XhoI	CTCGAG	2 cut(s)	33, 294
XspI	CTAG	2 cut(s)	53, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.