pycom16g09780

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
6681735 .. 6683483
1749 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1566 bp
ATGAATGTTGCGGATATGCCACAGCTTTGTTATAGTACCAGTGTTACACCACTTTCTCTGCAGAGAGCAGCTTTAGCTTGTCATCATGGTGCGAAGTGGGGCCTAGCGTTTAGATCATTCAGCACTCAGGGAGCAGCACCCTCTACTACTGCTCAACCTCCACCTCCACCTCCACCACCTCCCGAGAAAACTCATTTTGGTGGTTTGAAAGATGAAGACCGGATTTTCACCAACTTATATGGGTTGCACGACCCATTTCTCAAAGGTGCCATGAAACGAGGTGACTGGTACCGAACCAAAGATCTAGTTATTAAAGGTGCTGATTGGATTGTCAATGAAATGAAGAAGTCTGGCCTACGTGGACGTGGTGGTGCTGGTTTCCCATCTGGTCTCAAATGGTCTTTTATGCCAAAAGTATCTGATGGCCGTCCTTCCTATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAGGACAGGGAAATTATGCGCCATGACCCGCACAAACTTTTAGAGGGTTGCTTGATTGCTGGTGTTGGGATGAGGGCCAGTGCTGCGTACATCTATATAAGAGGTGAATATGTGAATGAACGGTTGAACCTTGTAAAAGCTAGAAATGAAGCTTATGCAGCTGGATTACTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGATGTTCATATCCACTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAAACAGCGCTTCTGGAGAGCCTTGAAGGGAAACAGGGGAAGCCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGATTATATGGCTGCCCCACCACTGTTACAAATGTGGAAACGGTGGCTGTTTCTCCCACCATTTTAAGGCGTGGACCAGAGTGGTTTGCCAGTTTTGGGAGAAAGAACAATTCAGGGACAAAATTGTTTTGTATCTCGGGACATGTGAACAAGCCTTGCACTGTTGAAGAGGAAATGAGCATACCCTTGAAAGAGTTACTAGAGAGGCACTGTGGAGGTGTGAGGGGTGGATGGGACAACTTACTTGCAGTAATTCCAGGTGGTTCATCTGTTCCATTGCTTACCAAGGATATATGCAATGATGTATTAATGGATTTTGATGCACTGAAGGCTGTCCAGTCAGGATTGGGAACTGCAGCTGTTATTGTGATGGATAAATCAACTGACATTGTTGATGCAATTGCAAGGCTTTCTTACTTCTACAAGCATGAGAGTTGTGGGCAGTGCACACCGTGTAGGGAGGGGACAGGATGGCTTTGGATGATCATGGAAAGAATGAAAGTTGGGAATGCAAAGCTGGAAGAGATTGACATGCTTCAGGAGGTGACCAAGCAGATTGAGGGGCACACAATCTGTGCGTTGGGTGATGCTGCTGCTTGGCCTGTGCAAGGTCTAATAAGGCATTTCAGGCCAGAGCTTGATAGGAGCGATCAGGGAGCGTGCAGAGAGGGAATTGCTGGAGGCAGCTGCTTAAGTGCTTCTCTCAGGTTGCTTCTTGTATCTATTCTGCATTCATTTCTTGATTCATCTTCTAAAAAGAAGTAA

Protein Analysis

522

Amino Acids

56.61

Weight (kDa)

8.22

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_51K PF01512 114 - 283 4.3e-44 Nuo51 FMN-binding domain
SLBB_2 PF22461 308 - 390 8.1e-18 SLBB domain
SLBB PF10531 310 - 358 9.8e-06 SLBB domain
NADH_4Fe-4S PF10589 399 - 481 8.5e-32 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 288
AccB1I GGYRCC 3 cut(s) 266, 288, 707
AciI CCGC 2 cut(s) 11, 506
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 1 cut(s) 424
AcuI CTGAAG 2 cut(s) 1148, 1322
AdeI CACNNNGTG 1 cut(s) 1254
AfaI GTAC 3 cut(s) 37, 290, 566
AfeI AGCGCT 1 cut(s) 735
AfiI CCNNNNNNNGG 3 cut(s) 867, 897, 1409
AflII CTTAAG 1 cut(s) 1492
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 6 cut(s) 208, 604, 752, 778, 968, 991
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 2 cut(s) 466, 1057
AleI CACNNNNGTG 1 cut(s) 699
Alw21I GWGCWC 1 cut(s) 1250
Alw26I GTCTC 1 cut(s) 395
Alw44I GTGCAC 1 cut(s) 1246
AlwI GGATC 1 cut(s) 673
Ama87I CYCGRG 2 cut(s) 182, 937
Aor51HI AGCGCT 1 cut(s) 735
AoxI GGCC 6 cut(s) 100, 352, 424, 552, 1400, 1430
ApaLI GTGCAC 1 cut(s) 1246
AseI ATTAAT 1 cut(s) 1109
Asp718I GGTACC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 498, 736
AspS9I GGNCC 3 cut(s) 100, 552, 875
AsuHPI GGTGA 6 cut(s) 220, 293, 593, 734, 1357, 1397
AvaI CYCGRG 2 cut(s) 182, 937
AvaII GGWCC 1 cut(s) 875
BaeGI GKGCMC 2 cut(s) 1250, 1368
BanI GGYRCC 3 cut(s) 266, 288, 707
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 1250
BccI CCATC 5 cut(s) 391, 416, 1026, 1165, 1266
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 2 cut(s) 468, 1059
BclI TGATCA 1 cut(s) 1284
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 4 cut(s) 104, 305, 618, 1001
BfmI CTRYAG 2 cut(s) 59, 1155
BfoI RGCGCY 1 cut(s) 737
BfrI CTTAAG 1 cut(s) 1492
BglII AGATCT 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 468, 1059
Bme18I GGWCC 1 cut(s) 875
BmeT110I CYCGRG 2 cut(s) 182, 937
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 3 cut(s) 100, 552, 875
BmiI GGNNCC 5 cut(s) 101, 268, 290, 472, 709
BmrFI CCNGG 2 cut(s) 468, 1059
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 3 cut(s) 1111, 1186, 1378
BmuI ACTGGG 1 cut(s) 656
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 2 cut(s) 761, 1500
BsaAI YACGTR 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 1086
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 867, 897, 1409
Bse1I ACTGG 6 cut(s) 39, 290, 555, 651, 891, 1138
Bse3DI GCAATG 2 cut(s) 1076, 1105
BseBI CCWGG 2 cut(s) 468, 1059
BseDI CCNNGG 1 cut(s) 1086
BseGI GGATG 4 cut(s) 552, 1037, 1277, 1287
BseLI CCNNNNNNNGG 3 cut(s) 867, 897, 1409
BseMI GCAATG 2 cut(s) 1076, 1105
BseMII CTCAG 2 cut(s) 140, 1519
BseNI ACTGG 6 cut(s) 39, 290, 555, 651, 891, 1138
BseSI GKGCMC 2 cut(s) 1250, 1368
BsgI GTGCAG 1 cut(s) 1483
BshFI GGCC 6 cut(s) 102, 354, 426, 554, 1402, 1432
BshNI GGYRCC 3 cut(s) 266, 288, 707
BsiHKAI GWGCWC 1 cut(s) 1250
BsiHKCI CYCGRG 2 cut(s) 182, 937
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 4 cut(s) 931, 954, 1049, 1279
BslI CCNNNNNNNGG 3 cut(s) 867, 897, 1409
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 4 cut(s) 931, 954, 1049, 1279
BsmI GAATGC 2 cut(s) 1315, 1531
BsnI GGCC 6 cut(s) 102, 354, 426, 554, 1402, 1432
Bso31I GGTCTC 1 cut(s) 395
BsoBI CYCGRG 2 cut(s) 182, 937
Bsp1286I GDGCHC 2 cut(s) 1250, 1368
Bsp143I GATC 5 cut(s) 113, 301, 665, 1284, 1450
BspACI CCGC 2 cut(s) 11, 506
BspANI GGCC 6 cut(s) 102, 354, 426, 554, 1402, 1432
BspCNI CTCAG 2 cut(s) 139, 1518
BspLI GGNNCC 5 cut(s) 101, 268, 290, 472, 709
BspMAI CTGCAG 2 cut(s) 63, 1159
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 3 cut(s) 266, 288, 707
BspTI CTTAAG 1 cut(s) 1492
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 1076, 1105
BsrI ACTGG 6 cut(s) 39, 290, 555, 651, 891, 1138
BssECI CCNNGG 1 cut(s) 1086
BssMI GATC 5 cut(s) 113, 301, 665, 1284, 1450
BssT1I CCWWGG 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 468, 1059
Bst4CI ACNGT 6 cut(s) 600, 826, 844, 964, 1013, 1254
Bst6I CTCTTC 2 cut(s) 963, 1317
BstAFI CTTAAG 1 cut(s) 1492
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 1462
BstDEI CTNAG 2 cut(s) 126, 1505
BstEII GGTNACC 1 cut(s) 1345
BstENI CCTNNNNNAGG 1 cut(s) 1407
BstF5I GGATG 4 cut(s) 552, 1037, 1277, 1287
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 2 cut(s) 498, 736
BstKTI GATC 5 cut(s) 116, 304, 668, 1287, 1453
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 5 cut(s) 113, 301, 665, 1284, 1450
BstMWI GCNNNNNNNGC 5 cut(s) 74, 560, 635, 1130, 1429
BstNI CCWGG 2 cut(s) 468, 1059
BstNSI RCATGY 2 cut(s) 947, 1336
BstPI GGTNACC 1 cut(s) 1345
BstSCI CCNGG 2 cut(s) 466, 1057
BstSFI CTRYAG 2 cut(s) 59, 1155
BstSLI GKGCMC 2 cut(s) 1250, 1368
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 301, 665
BstYI RGATCY 2 cut(s) 301, 665
BsuRI GGCC 6 cut(s) 102, 354, 426, 554, 1402, 1432
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 4 cut(s) 552, 1037, 1277, 1287
BtsI GCAGTG 1 cut(s) 1250
BtsIMutI CAGTG 7 cut(s) 46, 562, 822, 960, 1009, 1124, 1250
Cac8I GCNNGC 1 cut(s) 1462
CfoI GCGC 2 cut(s) 498, 736
Cfr13I GGNCC 3 cut(s) 100, 552, 875
Csp6I GTAC 3 cut(s) 36, 289, 565
CviAII CATG 7 cut(s) 86, 271, 500, 944, 1229, 1288, 1333
CviQI GTAC 3 cut(s) 36, 289, 565
DdeI CTNAG 2 cut(s) 126, 1505
DpnI GATC 5 cut(s) 115, 303, 667, 1286, 1452
DpnII GATC 5 cut(s) 113, 301, 665, 1284, 1450
DraIII CACNNNGTG 1 cut(s) 1254
EaeI YGGCCR 1 cut(s) 424
Eam1104I CTCTTC 2 cut(s) 963, 1317
EarI CTCTTC 2 cut(s) 963, 1317
Eco130I CCWWGG 1 cut(s) 1086
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 875
Eco47III AGCGCT 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 1148, 1322
Eco88I CYCGRG 2 cut(s) 182, 937
Eco91I GGTNACC 1 cut(s) 1345
EcoNI CCTNNNNNAGG 1 cut(s) 1407
EcoO109I RGGNCCY 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 1345
EcoRII CCWGG 2 cut(s) 466, 1057
EcoT14I CCWWGG 1 cut(s) 1086
ErhI CCWWGG 1 cut(s) 1086
FaeI CATG 7 cut(s) 89, 274, 503, 947, 1232, 1291, 1336
FalI AAGNNNNNCTT 2 cut(s) 1198, 1230
FaqI GGGAC 4 cut(s) 931, 954, 1049, 1279
FatI CATG 7 cut(s) 85, 270, 499, 943, 1228, 1287, 1332
FauI CCCGC 1 cut(s) 513
FbaI TGATCA 1 cut(s) 1284
FokI GGATG 4 cut(s) 559, 1044, 1284, 1294
FspBI CTAG 4 cut(s) 104, 305, 618, 1001
GlaI GCGC 2 cut(s) 497, 735
GsuI CTGGAG 2 cut(s) 761, 1500
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 6 cut(s) 102, 354, 426, 554, 1402, 1432
HapII CCGG 1 cut(s) 220
HhaI GCGC 2 cut(s) 498, 736
Hin1II CATG 7 cut(s) 89, 274, 503, 947, 1232, 1291, 1336
Hin6I GCGC 2 cut(s) 496, 734
HinP1I GCGC 2 cut(s) 496, 734
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 1 cut(s) 1544
HpaII CCGG 1 cut(s) 220
HphI GGTGA 6 cut(s) 220, 293, 593, 734, 1357, 1397
Hpy166II GTNNAC 5 cut(s) 362, 464, 875, 949, 1248
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 6 cut(s) 182, 740, 939, 1143, 1340, 1541
Hpy8I GTNNAC 5 cut(s) 362, 464, 875, 949, 1248
HpyAV CCTTC 3 cut(s) 441, 746, 1123
HpyCH4III ACNGT 6 cut(s) 600, 826, 844, 964, 1013, 1254
HpyCH4IV ACGT 2 cut(s) 358, 364
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 560, 635, 1130, 1429
HpyF3I CTNAG 2 cut(s) 126, 1505
HpySE526I ACGT 2 cut(s) 358, 364
Hsp92II CATG 7 cut(s) 89, 274, 503, 947, 1232, 1291, 1336
HspAI GCGC 2 cut(s) 496, 734
KpnI GGTACC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 1284
Kzo9I GATC 5 cut(s) 113, 301, 665, 1284, 1450
LmnI GCTCC 3 cut(s) 131, 1446, 1457
LweI GCATC 3 cut(s) 1111, 1186, 1378
MaeI CTAG 4 cut(s) 104, 305, 618, 1001
MaeII ACGT 2 cut(s) 358, 364
MaeIII GTNAC 5 cut(s) 43, 281, 826, 996, 1345
MalI GATC 5 cut(s) 115, 303, 667, 1286, 1452
MboI GATC 5 cut(s) 113, 301, 665, 1284, 1450
MboII GAAGA 6 cut(s) 227, 355, 737, 980, 1334, 1542
MfeI CAATTG 1 cut(s) 1200
MflI RGATCY 2 cut(s) 301, 665
MhlI GDGCHC 2 cut(s) 1250, 1368
MluCI AATT 6 cut(s) 489, 910, 923, 1053, 1200, 1473
MseI TTAA 4 cut(s) 312, 866, 1109, 1493
MslI CAYNNNNRTG 3 cut(s) 87, 198, 699
MspA1I CMGCKG 3 cut(s) 638, 1160, 1488
MspCI CTTAAG 1 cut(s) 1492
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 468, 1059
MunI CAATTG 1 cut(s) 1200
Mva1269I GAATGC 2 cut(s) 1315, 1531
MvaI CCWGG 2 cut(s) 468, 1059
MwoI GCNNNNNNNGC 5 cut(s) 74, 560, 635, 1130, 1429
NdeII GATC 5 cut(s) 113, 301, 665, 1284, 1450
NlaIII CATG 7 cut(s) 89, 274, 503, 947, 1232, 1291, 1336
NlaIV GGNNCC 5 cut(s) 101, 268, 290, 472, 709
NmuCI GTSAC 2 cut(s) 281, 1345
NspI RCATGY 2 cut(s) 947, 1336
OliI CACNNNNGTG 1 cut(s) 699
PciI ACATGT 1 cut(s) 943
PctI GAATGC 2 cut(s) 1315, 1531
PfeI GAWTC 1 cut(s) 1544
Ppu21I YACGTR 1 cut(s) 359
PscI ACATGT 1 cut(s) 943
PshBI ATTAAT 1 cut(s) 1109
Psp6I CCWGG 2 cut(s) 466, 1057
PspEI GGTNACC 1 cut(s) 1345
PspGI CCWGG 2 cut(s) 466, 1057
PspN4I GGNNCC 5 cut(s) 101, 268, 290, 472, 709
PspPI GGNCC 3 cut(s) 100, 552, 875
PstI CTGCAG 2 cut(s) 63, 1159
PsuI RGATCY 2 cut(s) 301, 665
PvuII CAGCTG 3 cut(s) 638, 1160, 1488
RsaI GTAC 3 cut(s) 37, 290, 566
RsaNI GTAC 3 cut(s) 36, 289, 565
RseI CAYNNNNRTG 3 cut(s) 87, 198, 699
SaqAI TTAA 4 cut(s) 312, 866, 1109, 1493
Sau3AI GATC 5 cut(s) 113, 301, 665, 1284, 1450
Sau96I GGNCC 3 cut(s) 100, 552, 875
ScrFI CCNGG 2 cut(s) 468, 1059
SduI GDGCHC 2 cut(s) 1250, 1368
SfaNI GCATC 3 cut(s) 1111, 1186, 1378
SfcI CTRYAG 2 cut(s) 59, 1155
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 3 cut(s) 87, 198, 699
SmlI CTYRAG 1 cut(s) 1492
SmoI CTYRAG 1 cut(s) 1492
Sse9I AATT 6 cut(s) 489, 910, 923, 1053, 1200, 1473
SsiI CCGC 2 cut(s) 11, 506
SspMI CTAG 4 cut(s) 104, 305, 618, 1001
StyD4I CCNGG 2 cut(s) 466, 1057
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 6 cut(s) 600, 826, 844, 964, 1013, 1254
TaiI ACGT 2 cut(s) 361, 367
TasI AATT 6 cut(s) 489, 910, 923, 1053, 1200, 1473
TfiI GAWTC 1 cut(s) 1544
Tru1I TTAA 4 cut(s) 312, 866, 1109, 1493
Tru9I TTAA 4 cut(s) 312, 866, 1109, 1493
TscAI CASTG 7 cut(s) 46, 562, 829, 967, 1016, 1131, 1250
TseFI GTSAC 2 cut(s) 281, 1345
Tsp45I GTSAC 2 cut(s) 281, 1345
TspRI CASTG 7 cut(s) 46, 562, 829, 967, 1016, 1131, 1250
Vha464I CTTAAG 1 cut(s) 1492
VneI GTGCAC 1 cut(s) 1246
VpaK11BI GGWCC 1 cut(s) 875
VspI ATTAAT 1 cut(s) 1109
XagI CCTNNNNNAGG 1 cut(s) 1407
XceI RCATGY 2 cut(s) 947, 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XspI CTAG 4 cut(s) 104, 305, 618, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.