pycom16g11000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015310
Physical Location & Seq
Forward (+)
7611727 .. 7612353
627 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGATGCTGCCCACCAATGCACAAATGGTCAAGTAATTTTCATCTGCAACCGGCGCAGGTTAGAGGCCAAACCCCCTTATCTTTCCCAGGGCGTTGATTCATCATCTGAAGCATTTCAACGAATACAAATGAAGTATGTGGACGACGAGGAAGGAATTAAAAAGTACTTTGCTGCATTTCATCTGCACGACACATTTCCAGTCGCGGTTGTCATCGATGATTTTGGAGATTTGTTTGAAATAAGAAGCCGCCAAGAAAGATACGGAAACCCACGAGGAAGAGACTTGGCAATGGTTCGGACACTGGCTTTGTGTCACAATGCCATCGATCCATGCCAAGTGAGTGACTATTTTAATTACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

5.74

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23255 AT3G23255
fragaria_vesca FvH4_4g22791 FvH4_4g22791
malus_domestica MD13G1129600.v1.1 MD16G1129800.v1.1
prunus_persica Prupe.1G216800_v2.0.a1
pyrus_communis pycom16g11000
rosa_chinensis RchiOBHm_Chr4g0429021
rosa_laevigata RLG00000007103
rosa_roxburghii Rroxscaffold_5G00370670
rosa_rugosa Rorug04G0232100
rosa_samantha Rh4BG294300 Rh4CG309800 Rh4DG291200
rosa_wichuraiana Rw4G024970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 48
AccII CGCG 1 cut(s) 206
AciI CCGC 2 cut(s) 206, 250
AclWI GGATC 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 167
AgsI TTSAA 2 cut(s) 119, 239
AjnI CCWGG 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 1 cut(s) 323
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 8, 173
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 57
BauI CACGAG 1 cut(s) 273
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 48
BisI GCNGC 3 cut(s) 9, 174, 250
BlsI GCNGC 3 cut(s) 10, 175, 251
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
Bsa29I ATCGAT 2 cut(s) 216, 327
BsaJI CCNNGG 2 cut(s) 87, 88
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 200, 309
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 89
BseCI ATCGAT 2 cut(s) 216, 327
BseDI CCNNGG 2 cut(s) 87, 88
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 200, 309
BseXI GCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 2 cut(s) 216, 327
BsiSI CCGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 276
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 2 cut(s) 206, 250
BspANI GGCC 1 cut(s) 68
BspDI ATCGAT 2 cut(s) 216, 327
BspFNI CGCG 1 cut(s) 206
BspMI ACCTGC 1 cut(s) 48
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 2 cut(s) 200, 309
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 87, 88
BssMI GATC 1 cut(s) 328
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 274
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 160
Bsu15I ATCGAT 2 cut(s) 216, 327
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 2 cut(s) 216, 327
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 302
BveI ACCTGC 1 cut(s) 48
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 51
ClaI ATCGAT 2 cut(s) 216, 327
Csp6I GTAC 1 cut(s) 166
CviAII CATG 1 cut(s) 333
CviJI RGCY 3 cut(s) 68, 249, 308
CviKI_1 RGCY 3 cut(s) 68, 249, 308
CviQI GTAC 1 cut(s) 166
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 336
FaiI YATR 2 cut(s) 138, 334
FatI CATG 1 cut(s) 332
Fnu4HI GCNGC 3 cut(s) 9, 174, 250
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 9, 174, 250
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 9, 174, 250
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 52
HhaI GCGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 336
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 109, 300
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 21, 48, 176, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 336
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 6 cut(s) 43, 65, 74, 101, 213, 290
Lsp1109I GCAGC 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 314, 344
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 1 cut(s) 291
MluCI AATT 4 cut(s) 36, 156, 355, 361
MnlI CCTC 3 cut(s) 58, 142, 269
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 159, 354
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 328
NlaIII CATG 1 cut(s) 336
NmuCI GTSAC 2 cut(s) 314, 344
PasI CCCWGGG 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 10, 175, 251
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 2 cut(s) 159, 354
SatI GCNGC 3 cut(s) 9, 174, 250
Sau3AI GATC 1 cut(s) 328
ScaI AGTACT 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 89
SetI ASST 1 cut(s) 62
Sse9I AATT 4 cut(s) 36, 156, 355, 361
SsiI CCGC 2 cut(s) 206, 250
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 2 cut(s) 216, 327
TasI AATT 4 cut(s) 36, 156, 355, 361
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 252
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 2 cut(s) 159, 354
Tru9I TTAA 2 cut(s) 159, 354
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 2 cut(s) 314, 344
TseI GCWGC 2 cut(s) 8, 173
Tsp45I GTSAC 2 cut(s) 314, 344
TspDTI ATGAA 4 cut(s) 31, 90, 146, 170
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.