pycom16g11560

Protein of unknown function (DUF1350)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
8050454 .. 8053703
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11560.1

Sequence Viewer

Length: 1329 bp
ATGGCCAGTTGCTGGGTAAGGAGTGCGCAGCCCCATCCCAATCTCCACCCTCATCAATCTTTCAGCAAGCGGCTGCTGATTCAGCCGCAGAGCAGCGACCTCAGCCTCTCGAATTCTCAGCGCCGTCGTCGGAGCAGAATCTGCTGCAACTACGACGACGAAACGACCAGGAGACAATCACAAGCACCAAGTCCACAGGGTCCACAACCAACTGGGATTCAGCTCTACTCTGAGATTGAGAGATTACTTACGGAGACAGTGAGGCAAGCCCAAGGTCGTTGGGATGGTACAGGCGACTGGACTCAAGTCGAGGGAGCATGGGTTCTCAAACCGAGAAACTCAGAACCCAAGGCCGTTGTACATTTTATTGGTGGCATATTTGTTGGAGCCGCCCCTCAGCTTACCTACCGTTTGTTTCTTGAGCGCCTCTCAGAAAAGGGTATTTTGGTGATTGCAACACCATATGCTAGTGGAATCGATCACTTCTTCATTGCAGATGAAACCCAATTCAAATTTGATAGGTGTTATCGATTTCTTAAAGAGACGGTTCAAGATCTTCCTACTTTCGGCATTGGCCACTCTTTGGGATCTGTCATCCACCTTTTGATCGGTTCAAGATATGCTGTTCAAAGAAATGGGAATGTGCTGATGGCATTCAATAACAAGGAGGCAAGTTCAACTATTCCTCTGTTCTCACCTGTTGTCGTTCCAGTTGCTCAAGGCCTTGGACCAATTTTATCACAGATTGCATCATCACCAACAATCCGCCTAGGGGCAGAAATGACTTTGAAGCAATTCGAAAACCTTAGCCCTCCCATCATGAAGCAAATTCTTCCCTTAGTTGAGCAGCTCCCTCCACTGTATATGGACTTAGTTAATGGAAGAGAATATTTTGCTCCAAAACCAGAAGAAACTCAGCGACTAGTAAAATCATACTACGGTATTTCCCGGAATCTTCTGGTGAAGTTCAGGGATGATATGATCGACGAGACTTCAACTTTGTCACAGTTGCTAATTTCAAATTCAGCCATCAGTTCTATGCTAGACATGTCAATTCGCTTATTACCTGGAGATCACGGGCTTCCTTTGCAACAGGCTCTCCCAGATGTGCCTCCGGCAATGGCAGATGCAGTAAATCGCGGAAGTGAGATGTTGGCTAATCTTACTGTAGGGACACCATGGGAGACCGTTGCCAAAGAAGTAGGCAGCACTTGGGGTGTAGACTCAAAGGTACTTCGTGCAGAAGCATCAAAAGACTTAGGCCTGCTTGTTGATGTGATTGCGTCGTGGATAACTTCAAATGCAGGTCCAACGCTCTTGAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

48.94

Weight (kDa)

7.71

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1350 PF07082 99 - 367 2.6e-53 Protein of unknown function (DUF1350)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013149)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 27
Acc36I ACCTGC 1 cut(s) 1295
AccB7I CCANNNNNTGG 2 cut(s) 12, 583
AccI GTMKAC 1 cut(s) 1221
AccII CGCG 1 cut(s) 1140
AciI CCGC 5 cut(s) 70, 86, 390, 766, 1140
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 2 cut(s) 3, 574
AcsI RAATTY 4 cut(s) 112, 512, 828, 1021
AfaI GTAC 3 cut(s) 289, 360, 1233
AfiI CCNNNNNNNGG 4 cut(s) 12, 566, 583, 772
AflIII ACRYGT 1 cut(s) 1047
AhlI ACTAGT 1 cut(s) 922
AjnI CCWGG 2 cut(s) 167, 1066
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 3 cut(s) 223, 400, 850
AluI AGCT 3 cut(s) 223, 400, 850
Alw26I GTCTC 5 cut(s) 166, 248, 536, 983, 1178
AlwI GGATC 1 cut(s) 595
AlwNI CAGNNNCTG 2 cut(s) 12, 141
AoxI GGCC 5 cut(s) 3, 351, 574, 721, 1261
ApeKI GCWGC 6 cut(s) 28, 73, 93, 144, 847, 1206
ApoI RAATTY 4 cut(s) 112, 512, 828, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 982, 1014
Asp700I GAANNNNTTC 1 cut(s) 794
AspA2I CCTAGG 1 cut(s) 769
AspLEI GCGC 3 cut(s) 28, 123, 426
AspS9I GGNCC 3 cut(s) 200, 728, 1307
AsuC2I CCSGG 1 cut(s) 949
AsuHPI GGTGA 4 cut(s) 460, 687, 747, 973
AsuII TTCGAA 1 cut(s) 798
AvaII GGWCC 3 cut(s) 200, 728, 1307
AvrII CCTAGG 1 cut(s) 769
BalI TGGCCA 2 cut(s) 5, 576
BbvCI CCTCAGC 2 cut(s) 101, 396
BbvI GCAGC 6 cut(s) 40, 60, 105, 131, 859, 1218
BccI CCATC 5 cut(s) 42, 278, 643, 824, 1037
BceAI ACGGC 3 cut(s) 108, 338, 1309
BciT130I CCWGG 2 cut(s) 169, 1068
BcnI CCSGG 1 cut(s) 949
BcoDI GTCTC 5 cut(s) 166, 248, 536, 983, 1178
BcuI ACTAGT 1 cut(s) 922
BfaI CTAG 4 cut(s) 468, 770, 923, 1043
BfmI CTRYAG 1 cut(s) 1167
BfoI RGCGCY 2 cut(s) 124, 427
BfuAI ACCTGC 1 cut(s) 1295
BglII AGATCT 1 cut(s) 553
BisI GCNGC 9 cut(s) 29, 71, 74, 86, 94, 145, 390, 848, 1207
BlnI CCTAGG 1 cut(s) 769
BlsI GCNGC 9 cut(s) 30, 72, 75, 87, 95, 146, 391, 849, 1208
Bme1390I CCNGG 3 cut(s) 169, 949, 1068
Bme18I GGWCC 3 cut(s) 200, 728, 1307
BmgT120I GGNCC 3 cut(s) 200, 728, 1307
BmiI GGNNCC 2 cut(s) 201, 388
BmrFI CCNGG 3 cut(s) 169, 949, 1068
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 758, 1117, 1256
BmuI ACTGGG 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 1 cut(s) 1089
Bpu10I CCTNAGC 3 cut(s) 101, 396, 806
Bpu14I TTCGAA 1 cut(s) 798
BpuEI CTTGAG 3 cut(s) 288, 440, 702
BpuMI CCSGG 1 cut(s) 949
Bsa29I ATCGAT 2 cut(s) 477, 529
BsaI GGTCTC 1 cut(s) 1178
BsaJI CCNNGG 5 cut(s) 271, 348, 724, 769, 1178
BsaXI ACNNNNNCTCC 4 cut(s) 306, 336, 1083, 1113
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 566, 583, 772
Bse1I ACTGG 4 cut(s) 6, 217, 302, 710
Bse3DI GCAATG 2 cut(s) 489, 1125
BseBI CCWGG 2 cut(s) 169, 1068
BseCI ATCGAT 2 cut(s) 477, 529
BseDI CCNNGG 5 cut(s) 271, 348, 724, 769, 1178
BseGI GGATG 4 cut(s) 34, 289, 594, 979
BseLI CCNNNNNNNGG 4 cut(s) 12, 566, 583, 772
BseMI GCAATG 2 cut(s) 489, 1125
BseMII CTCAG 7 cut(s) 115, 131, 222, 354, 410, 444, 929
BseNI ACTGG 4 cut(s) 6, 217, 302, 710
BseXI GCAGC 6 cut(s) 40, 60, 105, 131, 859, 1218
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 1260
Bsh1236I CGCG 1 cut(s) 1140
BshFI GGCC 5 cut(s) 5, 353, 576, 723, 1263
BshVI ATCGAT 2 cut(s) 477, 529
BsiSI CCGG 2 cut(s) 949, 1115
BslFI GGGAC 1 cut(s) 1186
BslI CCNNNNNNNGG 4 cut(s) 12, 566, 583, 772
BsmAI GTCTC 5 cut(s) 166, 248, 536, 983, 1178
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 1186
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 5 cut(s) 5, 353, 576, 723, 1263
Bso31I GGTCTC 1 cut(s) 1178
Bsp119I TTCGAA 1 cut(s) 798
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
Bsp19I CCATGG 1 cut(s) 1178
BspACI CCGC 5 cut(s) 70, 86, 390, 766, 1140
BspANI GGCC 5 cut(s) 5, 353, 576, 723, 1263
BspCNI CTCAG 7 cut(s) 114, 130, 223, 353, 409, 443, 928
BspDI ATCGAT 2 cut(s) 477, 529
BspFNI CGCG 1 cut(s) 1140
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 2 cut(s) 201, 388
BspMI ACCTGC 1 cut(s) 1295
BspPI GGATC 1 cut(s) 595
BspT104I TTCGAA 1 cut(s) 798
BspTNI GGTCTC 1 cut(s) 1178
BsrDI GCAATG 2 cut(s) 489, 1125
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 4 cut(s) 6, 217, 302, 710
BssECI CCNNGG 5 cut(s) 271, 348, 724, 769, 1178
BssMI GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
BssT1I CCWWGG 5 cut(s) 271, 348, 724, 769, 1178
Bst2UI CCWGG 2 cut(s) 169, 1068
Bst4CI ACNGT 8 cut(s) 259, 410, 547, 861, 941, 1008, 1168, 1189
Bst6I CTCTTC 1 cut(s) 877
BstAPI GCANNNNNTGC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 798
BstC8I GCNNGC 3 cut(s) 68, 267, 1265
BstDSI CCRYGG 1 cut(s) 1178
BstF5I GGATG 4 cut(s) 34, 289, 594, 979
BstFNI CGCG 1 cut(s) 1140
BstH2I RGCGCY 2 cut(s) 124, 427
BstHHI GCGC 3 cut(s) 28, 123, 426
BstKTI GATC 6 cut(s) 481, 556, 590, 609, 984, 1075
BstMAI GTCTC 5 cut(s) 166, 248, 536, 983, 1178
BstMBI GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
BstMWI GCNNNNNNNGC 5 cut(s) 82, 102, 141, 1087, 1321
BstNI CCWGG 2 cut(s) 169, 1068
BstNSI RCATGY 1 cut(s) 1051
BstPAI GACNNNNGTC 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 167, 947, 1066
BstSFI CTRYAG 1 cut(s) 1167
BstUI CGCG 1 cut(s) 1140
BstV1I GCAGC 6 cut(s) 40, 60, 105, 131, 859, 1218
BstX2I RGATCY 2 cut(s) 553, 587
BstYI RGATCY 2 cut(s) 553, 587
Bsu15I ATCGAT 2 cut(s) 477, 529
BsuRI GGCC 5 cut(s) 5, 353, 576, 723, 1263
BsuTUI ATCGAT 2 cut(s) 477, 529
BtgI CCRYGG 1 cut(s) 1178
BtsCI GGATG 4 cut(s) 34, 289, 594, 979
BtsIMutI CAGTG 2 cut(s) 264, 857
BveI ACCTGC 1 cut(s) 1295
Cac8I GCNNGC 3 cut(s) 68, 267, 1265
CaiI CAGNNNCTG 2 cut(s) 12, 141
CciI TCATGA 1 cut(s) 819
CfoI GCGC 3 cut(s) 28, 123, 426
Cfr13I GGNCC 3 cut(s) 200, 728, 1307
ClaI ATCGAT 2 cut(s) 477, 529
CseI GACGC 1 cut(s) 1272
Csp6I GTAC 3 cut(s) 288, 359, 1232
CviAII CATG 4 cut(s) 318, 820, 1048, 1179
CviQI GTAC 3 cut(s) 288, 359, 1232
DpnI GATC 6 cut(s) 480, 555, 589, 608, 983, 1074
DpnII GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
EaeI YGGCCR 2 cut(s) 3, 574
Eam1104I CTCTTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 877
EciI GGCGGA 1 cut(s) 755
Eco130I CCWWGG 5 cut(s) 271, 348, 724, 769, 1178
Eco147I AGGCCT 2 cut(s) 723, 1263
Eco31I GGTCTC 1 cut(s) 1178
Eco47I GGWCC 3 cut(s) 200, 728, 1307
EcoRI GAATTC 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 167, 1066
EcoT14I CCWWGG 5 cut(s) 271, 348, 724, 769, 1178
ErhI CCWWGG 5 cut(s) 271, 348, 724, 769, 1178
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 4 cut(s) 321, 823, 1051, 1182
FaqI GGGAC 1 cut(s) 1186
FatI CATG 4 cut(s) 317, 819, 1047, 1178
FauNDI CATATG 1 cut(s) 463
FblI GTMKAC 1 cut(s) 1221
Fnu4HI GCNGC 9 cut(s) 29, 71, 74, 86, 94, 145, 390, 848, 1207
FokI GGATG 4 cut(s) 21, 296, 581, 986
Fsp4HI GCNGC 9 cut(s) 29, 71, 74, 86, 94, 145, 390, 848, 1207
FspBI CTAG 4 cut(s) 468, 770, 923, 1043
FspI TGCGCA 1 cut(s) 27
GlaI GCGC 3 cut(s) 27, 122, 425
GluI GCNGC 9 cut(s) 29, 71, 74, 86, 94, 145, 390, 848, 1207
GsaI CCCAGC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 1089
HaeII RGCGCY 2 cut(s) 124, 427
HaeIII GGCC 5 cut(s) 5, 353, 576, 723, 1263
HapII CCGG 2 cut(s) 949, 1115
HgaI GACGC 1 cut(s) 1272
HhaI GCGC 3 cut(s) 28, 123, 426
Hin1II CATG 4 cut(s) 321, 823, 1051, 1182
Hin6I GCGC 3 cut(s) 26, 121, 424
HinP1I GCGC 3 cut(s) 26, 121, 424
HinfI GANTC 7 cut(s) 79, 138, 217, 301, 474, 952, 1223
HpaII CCGG 2 cut(s) 949, 1115
HphI GGTGA 4 cut(s) 460, 687, 747, 973
Hpy166II GTNNAC 3 cut(s) 194, 203, 1222
Hpy188I TCNGA 4 cut(s) 132, 232, 343, 433
Hpy188III TCNNGA 6 cut(s) 109, 419, 551, 615, 820, 1318
Hpy8I GTNNAC 3 cut(s) 194, 203, 1222
Hpy99I CGWCG 6 cut(s) 129, 132, 158, 161, 989, 1288
HpyCH4III ACNGT 8 cut(s) 259, 410, 547, 861, 941, 1008, 1168, 1189
HpyCH4V TGCA 8 cut(s) 147, 455, 494, 749, 1090, 1130, 1241, 1304
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 102, 141, 1087, 1321
Hsp92II CATG 4 cut(s) 321, 823, 1051, 1182
HspAI GCGC 3 cut(s) 26, 121, 424
Kzo9I GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
LmnI GCTCC 5 cut(s) 132, 314, 386, 855, 901
Lsp1109I GCAGC 6 cut(s) 40, 60, 105, 131, 859, 1218
LweI GCATC 3 cut(s) 758, 1117, 1256
MaeI CTAG 4 cut(s) 468, 770, 923, 1043
MaeIII GTNAC 1 cut(s) 1002
MalI GATC 6 cut(s) 480, 555, 589, 608, 983, 1074
MboI GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
MboII GAAGA 6 cut(s) 478, 548, 824, 894, 920, 947
MflI RGATCY 2 cut(s) 553, 587
MlsI TGGCCA 2 cut(s) 5, 576
MluCI AATT 9 cut(s) 112, 506, 512, 732, 794, 828, 1014, 1021, 1053
MluNI TGGCCA 2 cut(s) 5, 576
MlyI GAGTC 2 cut(s) 295, 1217
MmeI TCCRAC 2 cut(s) 110, 364
Mox20I TGGCCA 2 cut(s) 5, 576
MroXI GAANNNNTTC 1 cut(s) 794
MscI TGGCCA 2 cut(s) 5, 576
MseI TTAA 2 cut(s) 537, 876
Msp20I TGGCCA 2 cut(s) 5, 576
MspI CCGG 2 cut(s) 949, 1115
MspR9I CCNGG 3 cut(s) 169, 949, 1068
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 2 cut(s) 169, 1068
MvnI CGCG 1 cut(s) 1140
MwoI GCNNNNNNNGC 5 cut(s) 82, 102, 141, 1087, 1321
NciI CCSGG 1 cut(s) 949
NcoI CCATGG 1 cut(s) 1178
NdeI CATATG 1 cut(s) 463
NdeII GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
NlaIII CATG 4 cut(s) 321, 823, 1051, 1182
NlaIV GGNNCC 2 cut(s) 201, 388
NmuCI GTSAC 1 cut(s) 1002
NsbI TGCGCA 1 cut(s) 27
NspI RCATGY 1 cut(s) 1051
NspV TTCGAA 1 cut(s) 798
PagI TCATGA 1 cut(s) 819
PceI AGGCCT 2 cut(s) 723, 1263
PciI ACATGT 1 cut(s) 1047
PctI GAATGC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 794
PfeI GAWTC 5 cut(s) 79, 138, 217, 474, 952
PflMI CCANNNNNTGG 2 cut(s) 12, 583
PfoI TCCNGGA 1 cut(s) 947
PkrI GCNGC 9 cut(s) 30, 72, 75, 87, 95, 146, 391, 849, 1208
PleI GAGTC 2 cut(s) 295, 1217
PpsI GAGTC 2 cut(s) 295, 1217
PscI ACATGT 1 cut(s) 1047
PshAI GACNNNNGTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 167, 1066
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 2 cut(s) 167, 1066
PspN4I GGNNCC 2 cut(s) 201, 388
PspPI GGNCC 3 cut(s) 200, 728, 1307
PstNI CAGNNNCTG 2 cut(s) 12, 141
PsuI RGATCY 2 cut(s) 553, 587
RsaI GTAC 3 cut(s) 289, 360, 1233
RsaNI GTAC 3 cut(s) 288, 359, 1232
SaqAI TTAA 2 cut(s) 537, 876
SatI GCNGC 9 cut(s) 29, 71, 74, 86, 94, 145, 390, 848, 1207
Sau3AI GATC 6 cut(s) 478, 553, 587, 606, 981, 1072
Sau96I GGNCC 3 cut(s) 200, 728, 1307
SchI GAGTC 2 cut(s) 295, 1217
ScrFI CCNGG 3 cut(s) 169, 949, 1068
SfaNI GCATC 3 cut(s) 758, 1117, 1256
SfcI CTRYAG 1 cut(s) 1167
SfuI TTCGAA 1 cut(s) 798
SinI GGWCC 3 cut(s) 200, 728, 1307
SmlI CTYRAG 3 cut(s) 303, 419, 717
SmoI CTYRAG 3 cut(s) 303, 419, 717
SpeI ACTAGT 1 cut(s) 922
Sse9I AATT 9 cut(s) 112, 506, 512, 732, 794, 828, 1014, 1021, 1053
SseBI AGGCCT 2 cut(s) 723, 1263
SsiI CCGC 5 cut(s) 70, 86, 390, 766, 1140
SspI AATATT 1 cut(s) 890
SspMI CTAG 4 cut(s) 468, 770, 923, 1043
StuI AGGCCT 2 cut(s) 723, 1263
StyD4I CCNGG 3 cut(s) 167, 947, 1066
StyI CCWWGG 5 cut(s) 271, 348, 724, 769, 1178
TaaI ACNGT 8 cut(s) 259, 410, 547, 861, 941, 1008, 1168, 1189
TaqI TCGA 6 cut(s) 110, 309, 477, 529, 798, 984
TasI AATT 9 cut(s) 112, 506, 512, 732, 794, 828, 1014, 1021, 1053
TatI WGTACW 1 cut(s) 358
TauI GCSGC 3 cut(s) 73, 88, 392
TfiI GAWTC 5 cut(s) 79, 138, 217, 474, 952
Tru1I TTAA 2 cut(s) 537, 876
Tru9I TTAA 2 cut(s) 537, 876
TscAI CASTG 2 cut(s) 264, 864
TseFI GTSAC 1 cut(s) 1002
TseI GCWGC 6 cut(s) 28, 73, 93, 144, 847, 1206
Tsp45I GTSAC 1 cut(s) 1002
TspDTI ATGAA 3 cut(s) 478, 513, 836
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 264, 864
Van91I CCANNNNNTGG 2 cut(s) 12, 583
VpaK11BI GGWCC 3 cut(s) 200, 728, 1307
XapI RAATTY 4 cut(s) 112, 512, 828, 1021
XceI RCATGY 1 cut(s) 1051
XmaJI CCTAGG 1 cut(s) 769
XmiI GTMKAC 1 cut(s) 1221
XmnI GAANNNNTTC 1 cut(s) 794
XspI CTAG 4 cut(s) 468, 770, 923, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.