pycom16g12460

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013495
Physical Location & Seq
Reverse (-)
8737635 .. 8739096
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGCCGTCCCTGCAAACCGCATTGCCTCCTGAACTTGCCAACAACGTGATCAGATGTCTTCGGAGAGCTAAATATGTTGGTCATCGGCAACATAATACAGAACTTGTCGTTGATATGGTGCGGCGGGAATTCAAAAAGCATAAGCATGAGACAGATCCAGAGAAGATTCAAACATTGAAGGATAACGCGGCGAGGGGACTCATAAACCATATACTGTTTGAGTCTGAGAAGATGTCCGGTCGTAAGTTCAGCAGCAAGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

88

Amino Acids

10.11

Weight (kDa)

10.0

Isoelectric Point (pI)

71.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 18 - 61 1e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013495)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17300 AT3G17300 AT3G17300
fragaria_vesca FvH4_4g21000
malus_domestica MD16G1140400.v1.1
prunus_persica Prupe.1G110000_v2.0.a1 Prupe.1G110000_v2.0.a1
pyrus_communis pycom13g12610 pycom16g12460
rosa_chinensis RchiOBHm_Chr4g0426541
rosa_multiflora Rmu_sc0001821.1_g000006
rosa_roxburghii Rroxscaffold_5G00368550
rosa_rugosa Rorug04G0212700
rosa_samantha Rh4AG268300 Rh4BG274600 Rh4CG289000 Rh4DG271400
rosa_wichuraiana Rw4G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 18, 121, 124, 188
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 1 cut(s) 128
AgsI TTSAA 3 cut(s) 133, 170, 178
AluBI AGCT 2 cut(s) 68, 261
AluI AGCT 2 cut(s) 68, 261
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 50
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 262
BisI GCNGC 3 cut(s) 122, 189, 253
BlsI GCNGC 3 cut(s) 123, 190, 254
BpiI GAAGAC 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 48, 154
BspACI CCGC 4 cut(s) 18, 121, 124, 188
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 188
BspPI GGATC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 20
BssMI GATC 2 cut(s) 48, 154
Bst4CI ACNGT 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 2 cut(s) 51, 157
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 48, 154
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 10, 258
BstUI CGCG 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
CviAII CATG 1 cut(s) 146
CviJI RGCY 2 cut(s) 68, 261
CviKI_1 RGCY 2 cut(s) 68, 261
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 50, 156
DpnII GATC 2 cut(s) 48, 154
EcoRI GAATTC 1 cut(s) 128
FaeI CATG 1 cut(s) 149
FaiI YATR 8 cut(s) 75, 93, 116, 141, 147, 203, 210, 212
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 117
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 3 cut(s) 122, 189, 253
Fsp4HI GCNGC 3 cut(s) 122, 189, 253
FspBI CTAG 1 cut(s) 262
GluI GCNGC 3 cut(s) 122, 189, 253
HapII CCGG 1 cut(s) 237
Hin1II CATG 1 cut(s) 149
HinfI GANTC 3 cut(s) 166, 198, 221
HpaII CCGG 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 53, 63, 226
Hpy188III TCNNGA 2 cut(s) 29, 158
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 258
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 48, 154
LpnPI CCDG 4 cut(s) 23, 42, 171, 250
MaeI CTAG 1 cut(s) 262
MaeII ACGT 1 cut(s) 45
MalI GATC 2 cut(s) 50, 156
MboI GATC 2 cut(s) 48, 154
MboII GAAGA 3 cut(s) 50, 175, 241
MflI RGATCY 1 cut(s) 154
MluCI AATT 1 cut(s) 128
MlyI GAGTC 2 cut(s) 192, 230
MnlI CCTC 2 cut(s) 36, 186
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 10, 258
NdeII GATC 2 cut(s) 48, 154
NlaIII CATG 1 cut(s) 149
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 3 cut(s) 123, 190, 254
PleI GAGTC 2 cut(s) 192, 229
PpsI GAGTC 2 cut(s) 192, 229
PsuI RGATCY 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 3 cut(s) 122, 189, 253
Sau3AI GATC 2 cut(s) 48, 154
SchI GAGTC 2 cut(s) 192, 230
SetI ASST 3 cut(s) 48, 70, 263
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 1 cut(s) 128
SsiI CCGC 4 cut(s) 18, 121, 124, 188
SspMI CTAG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 48
TasI AATT 1 cut(s) 128
TauI GCSGC 2 cut(s) 124, 191
TfiI GAWTC 1 cut(s) 166
TseI GCWGC 1 cut(s) 252
XapI RAATTY 1 cut(s) 128
XspI CTAG 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.