pycom16g13140

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0013062
Physical Location & Seq
Forward (+)
9359646 .. 9361330
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGCAGCTCTGGGGCGTCACCGGTTCACCTTTGATTCCTGTGAAGGAGTTTTCTGATCCCACCATCATGAAGAAGTATGGAGTGACGCCTGACGCTGAAACCATCGACATCGCCAACACTGCGACGCAGAAAGAGGTTACGGTGGTGATGAAGATCTACTGGGGCGATGCCCGTGAGAAGATTCTCGAGGCAATTGACAAGACCCCCTTGAGCTTCCTTGTTATTGGAAACAGAGGCCTTGGCAAGCTTAAGAGGGTTATAATGGGCAGTGTCAGCAACCATATCGTAAATAATGCTTCGTGCCCAGTTACTGTCGTCAAGACTAGTTCCGAGTCCCATGCCAGCTAA

Protein Analysis

116

Amino Acids

12.47

Weight (kDa)

8.76

Isoelectric Point (pI)

19.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 38 - 107 5.7e-17 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013062)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17020 AT3G17020
fragaria_vesca FvH4_4g19580
malus_domestica MD13G1155500.v1.1 MD16G1155000.v1.1
prunus_persica Prupe.1G118700_v2.0.a1
pyrus_communis pycom13g13240 pycom16g13140
rosa_chinensis RchiOBHm_Chr4g0424841
rosa_laevigata RLG00000007416
rosa_multiflora Rmu_sc0003608.1_g000024
rosa_roxburghii Rroxscaffold_5G00367060
rosa_rugosa Rorug04G0199500
rosa_samantha Rh4AG257300 Rh4BG262600 Rh4CG273600 Rh4DG258400
rosa_wichuraiana Rw4G022200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AclWI GGATC 1 cut(s) 50
AcyI GRCGYC 2 cut(s) 15, 86
AflII CTTAAG 1 cut(s) 248
AgeI ACCGGT 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 323
AluBI AGCT 4 cut(s) 7, 213, 247, 345
AluI AGCT 4 cut(s) 7, 213, 247, 345
AlwI GGATC 1 cut(s) 50
AlwNI CAGNNNCTG 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 10, 18, 157
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 71, 110
BcgI CGANNNNNNTGC 3 cut(s) 265, 299, 320
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 248
BglII AGATCT 1 cut(s) 153
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 185
BmrI ACTGGG 2 cut(s) 169, 299
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 2 cut(s) 169, 299
BpuEI CTTGAG 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 152
BsaHI GRCGYC 2 cut(s) 15, 86
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 164, 305
Bse8I GATNNNNATC 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 152
BseNI ACTGG 2 cut(s) 164, 305
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 2 cut(s) 55, 153
BspANI GGCC 1 cut(s) 237
BspHI TCATGA 1 cut(s) 66
BspPI GGATC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 2 cut(s) 164, 305
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 55, 153
BssNI GRCGYC 2 cut(s) 15, 86
BssT1I CCWWGG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 142, 313
BstACI GRCGYC 2 cut(s) 15, 86
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 245, 343
BstKTI GATC 2 cut(s) 58, 156
BstMBI GATC 2 cut(s) 55, 153
BstMWI GCNNNNNNNGC 2 cut(s) 119, 273
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 1 cut(s) 237
BtgZI GCGATG 2 cut(s) 94, 180
BtsI GCAGTG 2 cut(s) 117, 274
BtsIMutI CAGTG 2 cut(s) 117, 274
Cac8I GCNNGC 2 cut(s) 245, 343
CaiI CAGNNNCTG 1 cut(s) 311
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 20
CseI GACGC 4 cut(s) 4, 94, 101, 133
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 2 cut(s) 67, 338
CviJI RGCY 5 cut(s) 7, 213, 237, 247, 345
CviKI_1 RGCY 5 cut(s) 7, 213, 237, 247, 345
DpnI GATC 2 cut(s) 57, 155
DpnII GATC 2 cut(s) 55, 153
Eco130I CCWWGG 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 70, 341
FaiI YATR 5 cut(s) 68, 78, 260, 282, 339
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 319
FatI CATG 2 cut(s) 66, 337
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 324
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 21
HgaI GACGC 4 cut(s) 4, 94, 101, 133
Hin1I GRCGYC 2 cut(s) 15, 86
Hin1II CATG 2 cut(s) 70, 341
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 34, 181, 332
HpaII CCGG 1 cut(s) 21
HphI GGTGA 3 cut(s) 10, 18, 157
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 55, 331
Hpy188III TCNNGA 3 cut(s) 67, 185, 319
Hpy8I GTNNAC 1 cut(s) 26
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 142, 313
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 273
Hsp92I GRCGYC 2 cut(s) 15, 86
Hsp92II CATG 2 cut(s) 70, 341
Kzo9I GATC 2 cut(s) 55, 153
LpnPI CCDG 5 cut(s) 34, 51, 102, 145, 318
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 4 cut(s) 16, 82, 136, 307
MalI GATC 2 cut(s) 57, 155
MboI GATC 2 cut(s) 55, 153
MboII GAAGA 3 cut(s) 82, 163, 190
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 192
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 4 cut(s) 127, 181, 227, 246
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 119, 273
NdeII GATC 2 cut(s) 55, 153
NlaIII CATG 2 cut(s) 70, 341
NmuCI GTSAC 2 cut(s) 16, 82
PaeR7I CTCGAG 1 cut(s) 185
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 2 cut(s) 34, 181
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PsiI TTATAA 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 55, 153
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 305
SetI ASST 6 cut(s) 9, 31, 138, 215, 249, 347
SfaNI GCATC 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 3 cut(s) 185, 208, 248
SmoI CTYRAG 3 cut(s) 185, 208, 248
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 237
SspMI CTAG 1 cut(s) 324
StuI AGGCCT 1 cut(s) 237
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 2 cut(s) 142, 313
TaqI TCGA 2 cut(s) 105, 186
TasI AATT 1 cut(s) 192
TfiI GAWTC 2 cut(s) 34, 181
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 124, 274
TseFI GTSAC 2 cut(s) 16, 82
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 16, 82
TspDTI ATGAA 2 cut(s) 83, 164
TspRI CASTG 2 cut(s) 124, 274
Vha464I CTTAAG 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 185
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.