U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g01981 |
| malus_domestica | MD13G1203200.v1.1 MD16G1204600.v1.1 |
| prunus_persica | Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 Prupe.1G025700_v2.0.a1 |
| pyrus_communis | pycom13g17650 pycom16g17270 |
| rosa_chinensis | RchiOBHm_Chr4g0388951 |
| rosa_laevigata | RLG00000010004 |
| rosa_multiflora | Rmu_sc0001395.1_g000012 |
| rosa_roxburghii | Rroxscaffold_5G00335270 |
| rosa_rugosa | Rorug03G0321600 |
| rosa_samantha | Rh4AG026100 Rh4BG019300 Rh4CG029100 Rh4DG019800 |
| rosa_wichuraiana | Rw0G003670 Rw4G001880 Rw4G001920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1274, 2462 |
| AatII | GACGTC | 1 cut(s) | 1181 |
| Acc36I | ACCTGC | 1 cut(s) | 420 |
| Acc65I | GGTACC | 1 cut(s) | 164 |
| AccB1I | GGYRCC | 3 cut(s) | 164, 688, 2031 |
| AccI | GTMKAC | 1 cut(s) | 1746 |
| AccII | CGCG | 4 cut(s) | 215, 867, 1422, 2987 |
| AccIII | TCCGGA | 1 cut(s) | 111 |
| AciI | CCGC | 4 cut(s) | 213, 1842, 1934, 2153 |
| AclI | AACGTT | 1 cut(s) | 3142 |
| AclWI | GGATC | 5 cut(s) | 283, 1404, 2525, 2538, 3049 |
| AcoI | YGGCCR | 1 cut(s) | 174 |
| AcsI | RAATTY | 6 cut(s) | 27, 44, 1753, 1982, 2009, 2251 |
| AcuI | CTGAAG | 2 cut(s) | 795, 2507 |
| AcyI | GRCGYC | 1 cut(s) | 1178 |
| AfaI | GTAC | 7 cut(s) | 56, 83, 166, 447, 982, 1528, 2557 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1257, 1392, 1393, 1415, 1416, 1558, 1771, 2900, 3004 |
| AflII | CTTAAG | 2 cut(s) | 917, 1195 |
| AflIII | ACRYGT | 3 cut(s) | 865, 986, 2985 |
| AgeI | ACCGGT | 1 cut(s) | 977 |
| AjnI | CCWGG | 7 cut(s) | 189, 1070, 1386, 1845, 1974, 2541, 3119 |
| Alw21I | GWGCWC | 2 cut(s) | 403, 2515 |
| Alw26I | GTCTC | 8 cut(s) | 588, 1087, 1136, 1169, 2199, 2273, 2689, 2999 |
| AlwI | GGATC | 5 cut(s) | 283, 1404, 2525, 2538, 3049 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2618 |
| Ama87I | CYCGRG | 3 cut(s) | 813, 892, 2695 |
| Aor13HI | TCCGGA | 1 cut(s) | 111 |
| ApoI | RAATTY | 6 cut(s) | 27, 44, 1753, 1982, 2009, 2251 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 629, 661, 1817, 1849, 2001, 2033 |
| AsiGI | ACCGGT | 1 cut(s) | 977 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 906, 1610, 2301, 2856, 2968 |
| Asp718I | GGTACC | 1 cut(s) | 164 |
| AspLEI | GCGC | 5 cut(s) | 1422, 2124, 2458, 2576, 2746 |
| AspS9I | GGNCC | 7 cut(s) | 247, 1191, 1691, 2004, 2048, 2604, 2706 |
| AsuC2I | CCSGG | 2 cut(s) | 328, 3174 |
| AsuHPI | GGTGA | 9 cut(s) | 1037, 1240, 1255, 1321, 1729, 1781, 2050, 2668, 3092 |
| AsuII | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| AsuNHI | GCTAGC | 1 cut(s) | 1921 |
| AvaI | CYCGRG | 3 cut(s) | 813, 892, 2695 |
| AvaII | GGWCC | 2 cut(s) | 2604, 2706 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2737, 2770 |
| BamHI | GGATCC | 1 cut(s) | 2530 |
| BanI | GGYRCC | 3 cut(s) | 164, 688, 2031 |
| BanII | GRGCYC | 2 cut(s) | 702, 1263 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1767, 1799 |
| BauI | CACGAG | 2 cut(s) | 1638, 2276 |
| BbsI | GAAGAC | 1 cut(s) | 2988 |
| Bbv12I | GWGCWC | 2 cut(s) | 403, 2515 |
| BccI | CCATC | 8 cut(s) | 71, 176, 670, 946, 1994, 2365, 2728, 3089 |
| BceAI | ACGGC | 1 cut(s) | 161 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 244, 278, 644, 678 |
| BciT130I | CCWGG | 7 cut(s) | 191, 1072, 1388, 1847, 1976, 2543, 3121 |
| BclI | TGATCA | 3 cut(s) | 526, 625, 1326 |
| BcnI | CCSGG | 2 cut(s) | 328, 3174 |
| BcoDI | GTCTC | 8 cut(s) | 588, 1087, 1136, 1169, 2199, 2273, 2689, 2999 |
| BfaI | CTAG | 7 cut(s) | 459, 1922, 2039, 2198, 2507, 3051, 3075 |
| BfmI | CTRYAG | 3 cut(s) | 293, 2634, 2758 |
| BfrI | CTTAAG | 2 cut(s) | 917, 1195 |
| BfuAI | ACCTGC | 1 cut(s) | 420 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2317 |
| BglII | AGATCT | 2 cut(s) | 1210, 2949 |
| BlpI | GCTNAGC | 1 cut(s) | 2740 |
| Bme1390I | CCNGG | 9 cut(s) | 191, 328, 1072, 1388, 1847, 1976, 2543, 3121, 3174 |
| Bme18I | GGWCC | 2 cut(s) | 2604, 2706 |
| BmeT110I | CYCGRG | 3 cut(s) | 813, 892, 2695 |
| BmgT120I | GGNCC | 7 cut(s) | 247, 1191, 1691, 2004, 2048, 2604, 2706 |
| BmiI | GGNNCC | 7 cut(s) | 166, 690, 1192, 2005, 2033, 2532, 2905 |
| BmrFI | CCNGG | 9 cut(s) | 191, 328, 1072, 1388, 1847, 1976, 2543, 3121, 3174 |
| BmsI | GCATC | 5 cut(s) | 811, 1440, 2140, 2353, 2917 |
| BmtI | GCTAGC | 1 cut(s) | 1925 |
| BpiI | GAAGAC | 1 cut(s) | 2988 |
| BpmI | CTGGAG | 3 cut(s) | 53, 1093, 2342 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1414 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2740 |
| Bpu14I | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| BpuEI | CTTGAG | 5 cut(s) | 303, 1118, 1411, 1420, 2363 |
| BpuMI | CCSGG | 2 cut(s) | 328, 3174 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1325 |
| BsaHI | GRCGYC | 1 cut(s) | 1178 |
| BsaJI | CCNNGG | 9 cut(s) | 138, 640, 1149, 1386, 1387, 1765, 1845, 2694, 3120 |
| BsaWI | WCCGGW | 2 cut(s) | 111, 977 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2650, 2680, 2895, 2925, 2939, 2969 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1257, 1392, 1393, 1415, 1416, 1558, 1771, 2900, 3004 |
| Bse118I | RCCGGY | 2 cut(s) | 426, 977 |
| Bse1I | ACTGG | 5 cut(s) | 962, 1247, 1486, 2445, 2565 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1325 |
| BseAI | TCCGGA | 1 cut(s) | 111 |
| BseBI | CCWGG | 7 cut(s) | 191, 1072, 1388, 1847, 1976, 2543, 3121 |
| BseDI | CCNNGG | 9 cut(s) | 138, 640, 1149, 1386, 1387, 1765, 1845, 2694, 3120 |
| BseGI | GGATG | 5 cut(s) | 63, 1083, 2365, 3084, 3100 |
| BseJI | GATNNNNATC | 1 cut(s) | 1325 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1257, 1392, 1393, 1415, 1416, 1558, 1771, 2900, 3004 |
| BseMII | CTCAG | 9 cut(s) | 599, 717, 1082, 1572, 2274, 2320, 2614, 2625, 2754 |
| BseNI | ACTGG | 5 cut(s) | 962, 1247, 1486, 2445, 2565 |
| BseRI | GAGGAG | 3 cut(s) | 2883, 2916, 2987 |
| BsgI | GTGCAG | 2 cut(s) | 890, 1662 |
| Bsh1236I | CGCG | 4 cut(s) | 215, 867, 1422, 2987 |
| BshNI | GGYRCC | 3 cut(s) | 164, 688, 2031 |
| BshTI | ACCGGT | 1 cut(s) | 977 |
| BsiHKAI | GWGCWC | 2 cut(s) | 403, 2515 |
| BsiHKCI | CYCGRG | 3 cut(s) | 813, 892, 2695 |
| BsiSI | CCGG | 6 cut(s) | 112, 328, 427, 978, 1694, 3173 |
| BslFI | GGGAC | 2 cut(s) | 328, 2494 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1257, 1392, 1393, 1415, 1416, 1558, 1771, 2900, 3004 |
| BsmAI | GTCTC | 8 cut(s) | 588, 1087, 1136, 1169, 2199, 2273, 2689, 2999 |
| BsmBI | CGTCTC | 1 cut(s) | 1169 |
| BsmFI | GGGAC | 2 cut(s) | 328, 2494 |
| BsoBI | CYCGRG | 3 cut(s) | 813, 892, 2695 |
| Bsp119I | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| Bsp1286I | GDGCHC | 4 cut(s) | 403, 702, 1263, 2515 |
| Bsp13I | TCCGGA | 1 cut(s) | 111 |
| Bsp1407I | TGTACA | 1 cut(s) | 81 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2740 |
| Bsp19I | CCATGG | 1 cut(s) | 138 |
| BspACI | CCGC | 4 cut(s) | 213, 1842, 1934, 2153 |
| BspCNI | CTCAG | 9 cut(s) | 598, 716, 1083, 1573, 2275, 2319, 2613, 2624, 2753 |
| BspEI | TCCGGA | 1 cut(s) | 111 |
| BspFNI | CGCG | 4 cut(s) | 215, 867, 1422, 2987 |
| BspHI | TCATGA | 1 cut(s) | 1048 |
| BspLI | GGNNCC | 7 cut(s) | 166, 690, 1192, 2005, 2033, 2532, 2905 |
| BspMAI | CTGCAG | 2 cut(s) | 2638, 2762 |
| BspMI | ACCTGC | 1 cut(s) | 420 |
| BspOI | GCTAGC | 1 cut(s) | 1925 |
| BspPI | GGATC | 5 cut(s) | 283, 1404, 2525, 2538, 3049 |
| BspT104I | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| BspT107I | GGYRCC | 3 cut(s) | 164, 688, 2031 |
| BspTI | CTTAAG | 2 cut(s) | 917, 1195 |
| BsrFI | RCCGGY | 2 cut(s) | 426, 977 |
| BsrGI | TGTACA | 1 cut(s) | 81 |
| BsrI | ACTGG | 5 cut(s) | 962, 1247, 1486, 2445, 2565 |
| BssAI | RCCGGY | 2 cut(s) | 426, 977 |
| BssECI | CCNNGG | 9 cut(s) | 138, 640, 1149, 1386, 1387, 1765, 1845, 2694, 3120 |
| BssNI | GRCGYC | 1 cut(s) | 1178 |
| BssSI | CACGAG | 2 cut(s) | 1638, 2276 |
| BssT1I | CCWWGG | 4 cut(s) | 138, 640, 1149, 1765 |
| Bst2BI | CACGAG | 2 cut(s) | 1638, 2276 |
| Bst2UI | CCWGG | 7 cut(s) | 191, 1072, 1388, 1847, 1976, 2543, 3121 |
| Bst4CI | ACNGT | 3 cut(s) | 582, 949, 2750 |
| Bst6I | CTCTTC | 2 cut(s) | 1101, 2270 |
| BstACI | GRCGYC | 1 cut(s) | 1178 |
| BstAFI | CTTAAG | 2 cut(s) | 917, 1195 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 868, 2633 |
| BstAUI | TGTACA | 1 cut(s) | 81 |
| BstBI | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| BstDSI | CCRYGG | 1 cut(s) | 138 |
| BstEII | GGTNACC | 1 cut(s) | 3098 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 1556, 1769, 2898, 3002 |
| BstF5I | GGATG | 5 cut(s) | 63, 1083, 2365, 3084, 3100 |
| BstFNI | CGCG | 4 cut(s) | 215, 867, 1422, 2987 |
| BstHHI | GCGC | 5 cut(s) | 1422, 2124, 2458, 2576, 2746 |
| BstMAI | GTCTC | 8 cut(s) | 588, 1087, 1136, 1169, 2199, 2273, 2689, 2999 |
| BstNI | CCWGG | 7 cut(s) | 191, 1072, 1388, 1847, 1976, 2543, 3121 |
| BstNSI | RCATGY | 3 cut(s) | 990, 1358, 1940 |
| BstPI | GGTNACC | 1 cut(s) | 3098 |
| BstSCI | CCNGG | 9 cut(s) | 189, 326, 1070, 1386, 1845, 1974, 2541, 3119, 3172 |
| BstSFI | CTRYAG | 3 cut(s) | 293, 2634, 2758 |
| BstUI | CGCG | 4 cut(s) | 215, 867, 1422, 2987 |
| BstV2I | GAAGAC | 1 cut(s) | 2988 |
| BstX2I | RGATCY | 3 cut(s) | 1210, 2530, 2949 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 145, 2542, 3095 |
| BstYI | RGATCY | 3 cut(s) | 1210, 2530, 2949 |
| BtgI | CCRYGG | 1 cut(s) | 138 |
| BtgZI | GCGATG | 1 cut(s) | 689 |
| BtsCI | GGATG | 5 cut(s) | 63, 1083, 2365, 3084, 3100 |
| BtsI | GCAGTG | 2 cut(s) | 1873, 2767 |
| BtsIMutI | CAGTG | 6 cut(s) | 1088, 1873, 1995, 2558, 2619, 2767 |
| BveI | ACCTGC | 1 cut(s) | 420 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2618 |
| CciI | TCATGA | 1 cut(s) | 1048 |
| CfoI | GCGC | 5 cut(s) | 1422, 2124, 2458, 2576, 2746 |
| Cfr10I | RCCGGY | 2 cut(s) | 426, 977 |
| Cfr13I | GGNCC | 7 cut(s) | 247, 1191, 1691, 2004, 2048, 2604, 2706 |
| CseI | GACGC | 3 cut(s) | 287, 2899, 2993 |
| CsiI | ACCWGGT | 1 cut(s) | 189 |
| Csp6I | GTAC | 7 cut(s) | 55, 82, 165, 446, 981, 1527, 2556 |
| CspAI | ACCGGT | 1 cut(s) | 977 |
| CviQI | GTAC | 7 cut(s) | 55, 82, 165, 446, 981, 1527, 2556 |
| DraI | TTTAAA | 1 cut(s) | 1557 |
| EaeI | YGGCCR | 1 cut(s) | 174 |
| Eam1104I | CTCTTC | 2 cut(s) | 1101, 2270 |
| EarI | CTCTTC | 2 cut(s) | 1101, 2270 |
| EciI | GGCGGA | 1 cut(s) | 1831 |
| Eco130I | CCWWGG | 4 cut(s) | 138, 640, 1149, 1765 |
| Eco147I | AGGCCT | 2 cut(s) | 575, 2113 |
| Eco24I | GRGCYC | 2 cut(s) | 702, 1263 |
| Eco32I | GATATC | 1 cut(s) | 522 |
| Eco47I | GGWCC | 2 cut(s) | 2604, 2706 |
| Eco57I | CTGAAG | 2 cut(s) | 795, 2507 |
| Eco88I | CYCGRG | 3 cut(s) | 813, 892, 2695 |
| Eco91I | GGTNACC | 1 cut(s) | 3098 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 1556, 1769, 2898, 3002 |
| EcoO109I | RGGNCCY | 2 cut(s) | 247, 1191 |
| EcoO65I | GGTNACC | 1 cut(s) | 3098 |
| EcoRI | GAATTC | 1 cut(s) | 27 |
| EcoRII | CCWGG | 7 cut(s) | 189, 1070, 1386, 1845, 1974, 2541, 3119 |
| EcoRV | GATATC | 1 cut(s) | 522 |
| EcoT14I | CCWWGG | 4 cut(s) | 138, 640, 1149, 1765 |
| EcoT38I | GRGCYC | 2 cut(s) | 702, 1263 |
| ErhI | CCWWGG | 4 cut(s) | 138, 640, 1149, 1765 |
| Esp3I | CGTCTC | 1 cut(s) | 1169 |
| FaqI | GGGAC | 2 cut(s) | 328, 2494 |
| FauI | CCCGC | 1 cut(s) | 2146 |
| FbaI | TGATCA | 3 cut(s) | 526, 625, 1326 |
| FblI | GTMKAC | 1 cut(s) | 1746 |
| FokI | GGATG | 5 cut(s) | 50, 1070, 2372, 3071, 3107 |
| FriOI | GRGCYC | 2 cut(s) | 702, 1263 |
| FspBI | CTAG | 7 cut(s) | 459, 1922, 2039, 2198, 2507, 3051, 3075 |
| GlaI | GCGC | 5 cut(s) | 1421, 2123, 2457, 2575, 2745 |
| GsuI | CTGGAG | 3 cut(s) | 53, 1093, 2342 |
| HapII | CCGG | 6 cut(s) | 112, 328, 427, 978, 1694, 3173 |
| HgaI | GACGC | 3 cut(s) | 287, 2899, 2993 |
| HhaI | GCGC | 5 cut(s) | 1422, 2124, 2458, 2576, 2746 |
| Hin1I | GRCGYC | 1 cut(s) | 1178 |
| Hin6I | GCGC | 5 cut(s) | 1420, 2122, 2456, 2574, 2744 |
| HinP1I | GCGC | 5 cut(s) | 1420, 2122, 2456, 2574, 2744 |
| HincII | GTYRAC | 2 cut(s) | 382, 1732 |
| HindII | GTYRAC | 2 cut(s) | 382, 1732 |
| HindIII | AAGCTT | 2 cut(s) | 2796, 2886 |
| HpaI | GTTAAC | 1 cut(s) | 1732 |
| HpaII | CCGG | 6 cut(s) | 112, 328, 427, 978, 1694, 3173 |
| HphI | GGTGA | 9 cut(s) | 1037, 1240, 1255, 1321, 1729, 1781, 2050, 2668, 3092 |
| Hpy166II | GTNNAC | 9 cut(s) | 84, 382, 1546, 1732, 1747, 1929, 2526, 2558, 2593 |
| Hpy8I | GTNNAC | 9 cut(s) | 84, 382, 1546, 1732, 1747, 1929, 2526, 2558, 2593 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 74 |
| HpyCH4III | ACNGT | 3 cut(s) | 582, 949, 2750 |
| HpyCH4IV | ACGT | 5 cut(s) | 57, 403, 453, 1178, 3142 |
| HpySE526I | ACGT | 5 cut(s) | 57, 403, 453, 1178, 3142 |
| Hsp92I | GRCGYC | 1 cut(s) | 1178 |
| HspAI | GCGC | 5 cut(s) | 1420, 2122, 2456, 2574, 2744 |
| Kpn2I | TCCGGA | 1 cut(s) | 111 |
| KpnI | GGTACC | 1 cut(s) | 168 |
| KroI | GCCGGC | 1 cut(s) | 426 |
| KroNI | GCCGGC | 1 cut(s) | 428 |
| Ksp22I | TGATCA | 3 cut(s) | 526, 625, 1326 |
| KspAI | GTTAAC | 1 cut(s) | 1732 |
| LmnI | GCTCC | 5 cut(s) | 148, 594, 1767, 2734, 2903 |
| LweI | GCATC | 5 cut(s) | 811, 1440, 2140, 2353, 2917 |
| MabI | ACCWGGT | 1 cut(s) | 189 |
| MaeI | CTAG | 7 cut(s) | 459, 1922, 2039, 2198, 2507, 3051, 3075 |
| MaeII | ACGT | 5 cut(s) | 57, 403, 453, 1178, 3142 |
| MaeIII | GTNAC | 8 cut(s) | 454, 540, 1079, 2056, 2614, 2764, 3098, 3129 |
| MboII | GAAGA | 8 cut(s) | 758, 775, 851, 911, 1049, 1118, 2257, 2993 |
| MfeI | CAATTG | 2 cut(s) | 1446, 2052 |
| MflI | RGATCY | 3 cut(s) | 1210, 2530, 2949 |
| MhlI | GDGCHC | 4 cut(s) | 403, 702, 1263, 2515 |
| MluI | ACGCGT | 2 cut(s) | 865, 2985 |
| MlyI | GAGTC | 9 cut(s) | 350, 884, 1418, 1583, 1742, 2213, 2219, 2476, 3001 |
| MmeI | TCCRAC | 4 cut(s) | 513, 1327, 1466, 2925 |
| MroI | TCCGGA | 1 cut(s) | 111 |
| MroNI | GCCGGC | 1 cut(s) | 426 |
| MroXI | GAANNNNTTC | 5 cut(s) | 906, 1610, 2301, 2856, 2968 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3093 |
| MspA1I | CMGCKG | 1 cut(s) | 1580 |
| MspCI | CTTAAG | 2 cut(s) | 917, 1195 |
| MspI | CCGG | 6 cut(s) | 112, 328, 427, 978, 1694, 3173 |
| MspR9I | CCNGG | 9 cut(s) | 191, 328, 1072, 1388, 1847, 1976, 2543, 3121, 3174 |
| MunI | CAATTG | 2 cut(s) | 1446, 2052 |
| MvaI | CCWGG | 7 cut(s) | 191, 1072, 1388, 1847, 1976, 2543, 3121 |
| MvnI | CGCG | 4 cut(s) | 215, 867, 1422, 2987 |
| NaeI | GCCGGC | 1 cut(s) | 428 |
| NciI | CCSGG | 2 cut(s) | 328, 3174 |
| NcoI | CCATGG | 1 cut(s) | 138 |
| NgoMIV | GCCGGC | 1 cut(s) | 426 |
| NheI | GCTAGC | 1 cut(s) | 1921 |
| NlaIV | GGNNCC | 7 cut(s) | 166, 690, 1192, 2005, 2033, 2532, 2905 |
| NmuCI | GTSAC | 4 cut(s) | 2056, 2614, 2764, 3098 |
| NspI | RCATGY | 3 cut(s) | 990, 1358, 1940 |
| NspV | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| PaeI | GCATGC | 1 cut(s) | 1358 |
| PaeR7I | CTCGAG | 2 cut(s) | 813, 892 |
| PagI | TCATGA | 1 cut(s) | 1048 |
| PasI | CCCWGGG | 1 cut(s) | 1387 |
| PceI | AGGCCT | 2 cut(s) | 575, 2113 |
| PciI | ACATGT | 1 cut(s) | 986 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 66 |
| PdiI | GCCGGC | 1 cut(s) | 428 |
| PdmI | GAANNNNTTC | 5 cut(s) | 906, 1610, 2301, 2856, 2968 |
| PfoI | TCCNGGA | 3 cut(s) | 1070, 1974, 3172 |
| PinAI | ACCGGT | 1 cut(s) | 977 |
| PleI | GAGTC | 9 cut(s) | 349, 884, 1418, 1582, 1742, 2213, 2219, 2476, 3000 |
| PpsI | GAGTC | 9 cut(s) | 349, 884, 1418, 1582, 1742, 2213, 2219, 2476, 3000 |
| PscI | ACATGT | 1 cut(s) | 986 |
| PsiI | TTATAA | 2 cut(s) | 1274, 2462 |
| Psp1406I | AACGTT | 1 cut(s) | 3142 |
| Psp6I | CCWGG | 7 cut(s) | 189, 1070, 1386, 1845, 1974, 2541, 3119 |
| PspEI | GGTNACC | 1 cut(s) | 3098 |
| PspGI | CCWGG | 7 cut(s) | 189, 1070, 1386, 1845, 1974, 2541, 3119 |
| PspN4I | GGNNCC | 7 cut(s) | 166, 690, 1192, 2005, 2033, 2532, 2905 |
| PspPI | GGNCC | 7 cut(s) | 247, 1191, 1691, 2004, 2048, 2604, 2706 |
| PspXI | VCTCGAGB | 1 cut(s) | 892 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1896, 1928 |
| PstI | CTGCAG | 2 cut(s) | 2638, 2762 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2618 |
| PsuI | RGATCY | 3 cut(s) | 1210, 2530, 2949 |
| PvuII | CAGCTG | 1 cut(s) | 1580 |
| RsaI | GTAC | 7 cut(s) | 56, 83, 166, 447, 982, 1528, 2557 |
| RsaNI | GTAC | 7 cut(s) | 55, 82, 165, 446, 981, 1527, 2556 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3093 |
| Sau96I | GGNCC | 7 cut(s) | 247, 1191, 1691, 2004, 2048, 2604, 2706 |
| SchI | GAGTC | 9 cut(s) | 350, 884, 1418, 1583, 1742, 2213, 2219, 2476, 3001 |
| ScrFI | CCNGG | 9 cut(s) | 191, 328, 1072, 1388, 1847, 1976, 2543, 3121, 3174 |
| SduI | GDGCHC | 4 cut(s) | 403, 702, 1263, 2515 |
| SexAI | ACCWGGT | 1 cut(s) | 189 |
| SfaNI | GCATC | 5 cut(s) | 811, 1440, 2140, 2353, 2917 |
| SfcI | CTRYAG | 3 cut(s) | 293, 2634, 2758 |
| Sfr274I | CTCGAG | 2 cut(s) | 813, 892 |
| SfuI | TTCGAA | 3 cut(s) | 254, 1141, 3149 |
| SinI | GGWCC | 2 cut(s) | 2604, 2706 |
| SlaI | CTCGAG | 2 cut(s) | 813, 892 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3093 |
| SmlI | CTYRAG | 9 cut(s) | 318, 813, 892, 917, 1133, 1195, 1426, 1435, 2342 |
| SmoI | CTYRAG | 9 cut(s) | 318, 813, 892, 917, 1133, 1195, 1426, 1435, 2342 |
| SphI | GCATGC | 1 cut(s) | 1358 |
| SseBI | AGGCCT | 2 cut(s) | 575, 2113 |
| SsiI | CCGC | 4 cut(s) | 213, 1842, 1934, 2153 |
| SspI | AATATT | 3 cut(s) | 133, 1185, 1816 |
| SspMI | CTAG | 7 cut(s) | 459, 1922, 2039, 2198, 2507, 3051, 3075 |
| StuI | AGGCCT | 2 cut(s) | 575, 2113 |
| StyD4I | CCNGG | 9 cut(s) | 189, 326, 1070, 1386, 1845, 1974, 2541, 3119, 3172 |
| StyI | CCWWGG | 4 cut(s) | 138, 640, 1149, 1765 |
| TaaI | ACNGT | 3 cut(s) | 582, 949, 2750 |
| TaiI | ACGT | 5 cut(s) | 60, 406, 456, 1181, 3145 |
| TaqII | GACCGA | 1 cut(s) | 268 |
| TatI | WGTACW | 2 cut(s) | 81, 1526 |
| TauI | GCSGC | 1 cut(s) | 215 |
| TscAI | CASTG | 6 cut(s) | 1095, 1873, 2002, 2565, 2619, 2767 |
| TseFI | GTSAC | 4 cut(s) | 2056, 2614, 2764, 3098 |
| Tsp45I | GTSAC | 4 cut(s) | 2056, 2614, 2764, 3098 |
| TspDTI | ATGAA | 9 cut(s) | 109, 564, 852, 1476, 1983, 2037, 2441, 2853, 3001 |
| TspGWI | ACGGA | 3 cut(s) | 481, 2460, 2543 |
| TspRI | CASTG | 6 cut(s) | 1095, 1873, 2002, 2565, 2619, 2767 |
| Vha464I | CTTAAG | 2 cut(s) | 917, 1195 |
| VpaK11BI | GGWCC | 2 cut(s) | 2604, 2706 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 1556, 1769, 2898, 3002 |
| XapI | RAATTY | 6 cut(s) | 27, 44, 1753, 1982, 2009, 2251 |
| XceI | RCATGY | 3 cut(s) | 990, 1358, 1940 |
| XhoI | CTCGAG | 2 cut(s) | 813, 892 |
| XmiI | GTMKAC | 1 cut(s) | 1746 |
| XmnI | GAANNNNTTC | 5 cut(s) | 906, 1610, 2301, 2856, 2968 |
| XspI | CTAG | 7 cut(s) | 459, 1922, 2039, 2198, 2507, 3051, 3075 |
| ZraI | GACGTC | 1 cut(s) | 1179 |