Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003344

Physical Location & Seq

Genomic Coordinates Reverse (-)

13750707 .. 13751276

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTTTATGAAGCGGAATTGCTCAGGGAAGTGGCTGTCCTTGCCGAAAATCTAGACCGAGACAGACTTGTTTCTACAAGGTCCGTTGTCACACAGCTTTTGGAGGATTTGTTAAGGGAGAAGGCAGACAAGGACCTAGGATACTTTCTTGCAGTCACTGGCCTAAAGAGGATAGGAAAGGGAGAAGTTGTAGACAACTCAGGAGACGTCTTCTTCCCTGTAGTATTCAATTGTCGCATGTTCCTACCTTGCAAGGGAGAGATCTTGGAAGGAGTCGTTCATCACATATACAGGCTTGGGGTTTTCTTGAGATGTGGACCTGTTAAATATGTTTTTCTCTCCGCTCGGAAAATGCCAAACTTCCGCTATGTTGCCGGCGAAAATCCAGTCTACTTGAACGACGACCTTTCAAAGATAGATAACGATGTTGTAATTCGCTTCAAGGTGCTTGGAATCAGGTGGATAGAGATTAGGGACGATATAAGGAAGGAGTTTGTGATGCTTGCCAGTTTAGAGGGCGATTCGCTTGGTCCCCTTACATTACCAGGTCCTGATGGACTGGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000428 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006366 GO:0006367 GO:0006401 GO:0006402 GO:0006417 GO:0006446 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016070 GO:0016071 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031369 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0034248 GO:0034250 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045727 GO:0045935 GO:0045948 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0055029 GO:0060211 GO:0060213 GO:0060255 GO:0061013 GO:0061014 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1900151 GO:1900153 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902494 GO:1903311 GO:1903313 GO:1990234 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

190

Amino Acids

21.45

Weight (kDa)

5.32

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520 AT4G14520
fragaria_vesca	FvH4_4g02580 FvH4_4g02580
malus_domestica	MD13G1206600.v1.1 MD16G1207800.v1.1
prunus_persica	Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1 Prupe.1G030200_v2.0.a1
pyrus_communis	pycom13g17900 pycom16g17520
rosa_chinensis	RchiOBHm_Chr4g0390281
rosa_laevigata	RLG00000009928
rosa_multiflora	Rmu_sc0004432.1_g000010 Rmu_sc0014620.1_g000002
rosa_roxburghii	Rroxscaffold_5G00336400
rosa_rugosa	Rorug03G0329000
rosa_samantha	Rh4AG031400 Rh4BG025400 Rh4CG034600 Rh4DG026600
rosa_wichuraiana	Rw4G002500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccBSI	CCGCTC	1 cut(s)	344
AccI	GTMKAC	2 cut(s)	192, 390
AciI	CCGC	3 cut(s)	14, 342, 364
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	229, 397, 411, 442
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	2 cut(s)	54, 198
AlwNI	CAGNNNCTG	2 cut(s)	158, 551
AoxI	GGCC	1 cut(s)	160
ArsI	GACNNNNNNTTYG	2 cut(s)	372, 404
AspA2I	CCTAGG	1 cut(s)	136
AspS9I	GGNCC	5 cut(s)	81, 133, 317, 530, 548
AvaII	GGWCC	5 cut(s)	81, 133, 317, 530, 548
AvrII	CCTAGG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	1 cut(s)	548
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	54, 198
BfaI	CTAG	2 cut(s)	53, 137
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	261
BlnI	CCTAGG	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	5 cut(s)	81, 133, 317, 530, 548
BmgT120I	GGNCC	5 cut(s)	81, 133, 317, 530, 548
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	136
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 174, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	4 cut(s)	163, 386, 507, 564
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	37, 213
BseNI	ACTGG	4 cut(s)	163, 386, 507, 564
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	2 cut(s)	488, 516
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	54, 198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	488, 516
BsnI	GGCC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	14, 342, 364
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	36, 212
BspLI	GGNNCC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	4 cut(s)	163, 386, 507, 564
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	376, 504
BstDEI	CTNAG	2 cut(s)	23, 199
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	54, 198
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	376, 504
CaiI	CAGNNNCTG	2 cut(s)	158, 551
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	5 cut(s)	81, 133, 317, 530, 548
CsiI	ACCWGGT	1 cut(s)	544
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	4 cut(s)	35, 97, 162, 295
CviKI_1	RGCY	4 cut(s)	35, 97, 162, 295
DdeI	CTNAG	2 cut(s)	23, 199
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	5 cut(s)	81, 133, 317, 530, 548
EcoO109I	RGGNCCY	2 cut(s)	133, 548
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	241
FaiI	YATR	7 cut(s)	9, 239, 287, 289, 330, 369, 482
FaqI	GGGAC	2 cut(s)	488, 516
FatI	CATG	1 cut(s)	237
FblI	GTMKAC	2 cut(s)	192, 390
FspBI	CTAG	2 cut(s)	53, 137
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	3 cut(s)	273, 453, 521
HpaII	CCGG	1 cut(s)	375
Hpy166II	GTNNAC	3 cut(s)	193, 317, 391
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	4 cut(s)	53, 201, 307, 551
Hpy8I	GTNNAC	3 cut(s)	193, 317, 391
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	3 cut(s)	115, 263, 481
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	2 cut(s)	152, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	23, 199
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	241
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	261
LweI	GCATC	1 cut(s)	489
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	2 cut(s)	53, 137
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	88, 154
MalI	GATC	1 cut(s)	263
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	202, 205
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	3 cut(s)	17, 229, 432
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	97, 162, 508
MroNI	GCCGGC	1 cut(s)	374
MseI	TTAA	2 cut(s)	113, 324
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	376
NdeII	GATC	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	2 cut(s)	88, 154
NspI	RCATGY	1 cut(s)	241
PdiI	GCCGGC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	453, 521
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	2 cut(s)	133, 548
Psp5II	RGGWCCY	2 cut(s)	133, 548
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	5 cut(s)	81, 133, 317, 530, 548
PspPPI	RGGWCCY	2 cut(s)	133, 548
PstNI	CAGNNNCTG	2 cut(s)	158, 551
PsuI	RGATCY	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	113, 324
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	5 cut(s)	81, 133, 317, 530, 548
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	546
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	5 cut(s)	81, 133, 317, 530, 548
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	3 cut(s)	17, 229, 432
SsiI	CCGC	3 cut(s)	14, 342, 364
SspMI	CTAG	2 cut(s)	53, 137
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	136
TaiI	ACGT	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	3 cut(s)	17, 229, 432
TfiI	GAWTC	2 cut(s)	453, 521
Tru1I	TTAA	2 cut(s)	113, 324
Tru9I	TTAA	2 cut(s)	113, 324
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	88, 154
Tsp45I	GTSAC	2 cut(s)	88, 154
TspDTI	ATGAA	2 cut(s)	24, 269
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	5 cut(s)	81, 133, 317, 530, 548
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	192, 390
XspI	CTAG	2 cut(s)	53, 137
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.