pycom16g19900

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0019328
Physical Location & Seq
Forward (+)
17348666 .. 17349607
942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGCGGACTAAAACTATGCGCACCATCTCAATTGACTATGTATCCGACTGCTTACAGGCAGCCCTCTTACTATCAAGTATACCGTCTGAAATAGTAGGAGAAGCCGTACAGACTGATCACCTATATGATGCTGTTAATGTGATATTATCCCTACAGAACAGTACTGGAGGATTTGCTTCCTATGAACTCACAAGATCTTACCCCTGGTTGGAGATGATCAATCCAGCTGAAACGTTCGGAGATATCATCATTGACTATCAGTACGTGGAATGCACATCAGCAGCAATACAAGGCCTTAAATCATTCATGAAGTTATATCCAGGACATAGGAGGAAAGAAATATTAGCATGCATTGCAAGGGCAGTCAAATTCATCGAGAGCATACAACAACCTGATGGCTCGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

136

Amino Acids

15.13

Weight (kDa)

5.06

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 32 - 135 7.4e-07 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019328)

Species Orthologous Gene IDs
pyrus_communis pycom16g19900
rosa_samantha Rh2BG479000 Rh4AG002700 Rh4CG002800 Rh4CG002900 Rh4CG083400 Rh4DG002000 Rh7CG366900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AccI GTMKAC 1 cut(s) 79
AciI CCGC 1 cut(s) 4
AclI AACGTT 1 cut(s) 233
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 3 cut(s) 108, 163, 263
AfiI CCNNNNNNNGG 1 cut(s) 208
AjnI CCWGG 2 cut(s) 203, 319
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 59, 281
ApoI RAATTY 1 cut(s) 368
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 110
BauI CACGAG 1 cut(s) 400
BbvI GCAGC 2 cut(s) 71, 293
BccI CCATC 2 cut(s) 32, 389
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 205, 321
BciVI GTATCC 1 cut(s) 52
BclI TGATCA 2 cut(s) 115, 216
BfmI CTRYAG 1 cut(s) 152
BfuI GTATCC 1 cut(s) 52
BglII AGATCT 1 cut(s) 194
BisI GCNGC 2 cut(s) 60, 282
BlsI GCNGC 2 cut(s) 61, 283
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 205, 321
BmrFI CCNGG 2 cut(s) 205, 321
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 186
BsaAI YACGTR 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 2 cut(s) 205, 321
BseDI CCNNGG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 71, 293
BshFI GGCC 1 cut(s) 294
BslI CCNNNNNNNGG 1 cut(s) 208
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 115, 194, 216
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 294
BspHI TCATGA 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 3 cut(s) 115, 194, 216
BssNAI GTATAC 1 cut(s) 80
BssSI CACGAG 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 400
Bst2UI CCWGG 2 cut(s) 205, 321
Bst4CI ACNGT 2 cut(s) 84, 161
BstAPI GCANNNNNTGC 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 349
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 118, 197, 219
BstMBI GATC 3 cut(s) 115, 194, 216
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 2 cut(s) 205, 321
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 203, 319
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 71, 293
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BstZ17I GTATAC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 349
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 21
Csp6I GTAC 3 cut(s) 107, 162, 262
CviAII CATG 2 cut(s) 307, 348
CviJI RGCY 5 cut(s) 62, 104, 227, 294, 399
CviKI_1 RGCY 5 cut(s) 62, 104, 227, 294, 399
CviQI GTAC 3 cut(s) 107, 162, 262
DpnI GATC 3 cut(s) 117, 196, 218
DpnII GATC 3 cut(s) 115, 194, 216
Eco147I AGGCCT 1 cut(s) 294
Eco32I GATATC 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 203, 319
EcoRV GATATC 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 353
FaeI CATG 2 cut(s) 310, 351
FatI CATG 2 cut(s) 306, 347
FbaI TGATCA 2 cut(s) 115, 216
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 60, 282
Fsp4HI GCNGC 2 cut(s) 60, 282
FspAI RTGCGCAY 1 cut(s) 20
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GluI GCNGC 2 cut(s) 60, 282
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 294
HhaI GCGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 310, 351
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 46, 88, 239
Hpy188III TCNNGA 2 cut(s) 307, 376
Hpy8I GTNNAC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 84, 161
HpyCH4IV ACGT 2 cut(s) 233, 264
HpyCH4V TGCA 3 cut(s) 273, 351, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpySE526I ACGT 2 cut(s) 233, 264
Hsp92II CATG 2 cut(s) 310, 351
HspAI GCGC 1 cut(s) 19
Ksp22I TGATCA 2 cut(s) 115, 216
Kzo9I GATC 3 cut(s) 115, 194, 216
LpnPI CCDG 7 cut(s) 41, 150, 190, 217, 237, 306, 333
Lsp1109I GCAGC 2 cut(s) 71, 293
LweI GCATC 1 cut(s) 118
MaeII ACGT 2 cut(s) 233, 264
MalI GATC 3 cut(s) 117, 196, 218
MboI GATC 3 cut(s) 115, 194, 216
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 194
MluCI AATT 2 cut(s) 30, 368
MmeI TCCRAC 2 cut(s) 69, 189
MnlI CCTC 3 cut(s) 74, 161, 324
Mph1103I ATGCAT 1 cut(s) 353
MseI TTAA 2 cut(s) 135, 297
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 205, 321
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 2 cut(s) 205, 321
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 3 cut(s) 115, 194, 216
NlaIII CATG 2 cut(s) 310, 351
NsbI TGCGCA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 1 cut(s) 351
PaeI GCATGC 1 cut(s) 351
PagI TCATGA 1 cut(s) 306
PceI AGGCCT 1 cut(s) 294
PctI GAATGC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 2 cut(s) 61, 283
Ppu21I YACGTR 1 cut(s) 265
Psp1406I AACGTT 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 203, 319
PspGI CCWGG 2 cut(s) 203, 319
PsuI RGATCY 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 108, 163, 263
RsaNI GTAC 3 cut(s) 107, 162, 262
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 135, 297
SatI GCNGC 2 cut(s) 60, 282
Sau3AI GATC 3 cut(s) 115, 194, 216
ScaI AGTACT 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 205, 321
SetI ASST 5 cut(s) 123, 229, 236, 267, 394
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 123
SphI GCATGC 1 cut(s) 351
Sse9I AATT 2 cut(s) 30, 368
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 342
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 203, 319
TaaI ACNGT 2 cut(s) 84, 161
TaiI ACGT 2 cut(s) 236, 267
TaqI TCGA 1 cut(s) 375
TasI AATT 2 cut(s) 30, 368
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 2 cut(s) 135, 297
Tru9I TTAA 2 cut(s) 135, 297
TseI GCWGC 2 cut(s) 59, 281
TspDTI ATGAA 4 cut(s) 198, 295, 323, 361
XapI RAATTY 1 cut(s) 368
XceI RCATGY 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.