Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019328

Physical Location & Seq

Genomic Coordinates Forward (+)

686241 .. 689804

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGAAATCCGTTCCTTTACTAAGGAACGGACCTCCGGTCCGTTAGTAGTCAGCATCAGTGGCGGTTTCCCTGCTTGGGAGCCTCAAAGAGCATTTCGATGGTTGGAGATATTCAACCCCACAGAGTTCTTTGAAGATACTCTTATTGAACGAGAGTACGTTTATACAAATCTAGAAGGCAACCGCGCTAATCTGGTACACACTGCATGGGCTTTATTGTCCCTCATCGATGCCGGGCAGATCGAGGAAGTTAAATCAAATGGTTCACACTCAAAAGTGAAGTGTTCTTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042299 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

98

Amino Acids

11.2

Weight (kDa)

5.33

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019328)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19900
rosa_samantha	Rh2BG479000 Rh4AG002700 Rh4CG002800 Rh4CG002900 Rh4CG083400 Rh4DG002000 Rh7CG366900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	63, 184
AfaI	GTAC	2 cut(s)	158, 198
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	115, 134, 149
AhdI	GACNNNNNGTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	30, 38
AsuC2I	CCSGG	1 cut(s)	235
AvaII	GGWCC	2 cut(s)	30, 38
BccI	CCATC	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	235
BfaI	CTAG	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	2 cut(s)	30, 38
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	30, 38
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	63, 220
BpuMI	CCSGG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	36, 234
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	2 cut(s)	63, 184
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	81
BssMI	GATC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	228
BsuTUI	ATCGAT	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	64, 201
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	30, 38
ClaI	ATCGAT	1 cut(s)	228
CpoI	CGGWCCG	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	157, 197
CspI	CGGWCCG	1 cut(s)	38
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	2 cut(s)	82, 212
CviKI_1	RGCY	2 cut(s)	82, 212
CviQI	GTAC	2 cut(s)	157, 197
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DriI	GACNNNNNGTC	1 cut(s)	36
Eam1105I	GACNNNNNGTC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	30, 38
FaeI	CATG	1 cut(s)	210
FaiI	YATR	2 cut(s)	165, 208
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	206
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	187
HapII	CCGG	2 cut(s)	36, 234
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	36, 234
Hpy166II	GTNNAC	2 cut(s)	199, 266
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	199, 266
HpyAV	CCTTC	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	4 cut(s)	49, 84, 179, 247
LweI	GCATC	2 cut(s)	63, 220
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	159
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	43, 93, 233, 238
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	2 cut(s)	36, 234
MspR9I	CCNGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	30, 38
RsaI	GTAC	2 cut(s)	158, 198
RsaNI	GTAC	2 cut(s)	157, 197
RseI	CAYNNNNRTG	1 cut(s)	97
Rsr2I	CGGWCCG	1 cut(s)	38
RsrII	CGGWCCG	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	30, 38
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	2 cut(s)	35, 162
SfaNI	GCATC	2 cut(s)	63, 220
SinI	GGWCC	2 cut(s)	30, 38
SmiMI	CAYNNNNRTG	1 cut(s)	97
SsiI	CCGC	2 cut(s)	63, 184
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	233
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	97, 228, 243
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	64, 208
TspGWI	ACGGA	2 cut(s)	30, 43
TspRI	CASTG	2 cut(s)	64, 208
VpaK11BI	GGWCC	2 cut(s)	30, 38
XbaI	TCTAGA	1 cut(s)	172
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.