Rh4AG002700

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0019328
Physical Location & Seq
Forward (+)
438033 .. 499377
61345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG002700.1

Sequence Viewer

Length: 525 bp
ATGTGGCGGATCGCCGGGGCTGGCCTAACCCTCGTCCAAAACAATGAGGGTTTTGTTAGCATCAGTGGCGGTTTCCCTGCTTGGGAGCCTCAAAGAGCATTTCGTTGGTTGGAGAAATTCAACCCCACAGAGTTCTTTGAAGATACTCTTATTGAACGAGAGTACGTTTATACAAATCTAGAAGGCAACCGCGCTAATCTGGTACACACTGCATGGGCTTTATTGTCCCTCATCGATGCCGGGCAGGTTCTTGCGGTTACCACCGACCCCAAACCCACCAAGTTCGGCTCATCACCATCAAAACCCAAATCTCCATCGCCCAACTCTGTCAATGGCTCCTCCTCGAGGTCCCCGCCTATCAATGGAGTTTCCACAAGAATTGGAGATGTTTCCAAGGAAATCAAAAGGGTGCGAGCACAGATGGAAGAAAACGAAGACTTGGCAATACTCATGAAAGGTCTTCGCGGACAAAATTTGAAGGATTCACAGTTTGCTGAGGATGATGTTCAGCTTCGTCTTGTTGAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC1 APH

Protein Analysis

175

Amino Acids

19.42

Weight (kDa)

5.58

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019328)

Species Orthologous Gene IDs
pyrus_communis pycom16g19900
rosa_samantha Rh2BG479000 Rh4AG002700 Rh4CG002800 Rh4CG002900 Rh4CG083400 Rh4DG002000 Rh7CG366900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 235
AccII CGCG 2 cut(s) 192, 465
AciI CCGC 6 cut(s) 7, 69, 190, 254, 353, 465
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 2 cut(s) 116, 472
AfaI GTAC 2 cut(s) 164, 204
AfiI CCNNNNNNNGG 3 cut(s) 82, 345, 362
AgsI TTSAA 4 cut(s) 121, 140, 155, 478
AluBI AGCT 1 cut(s) 511
AluI AGCT 1 cut(s) 511
Alw21I GWGCWC 1 cut(s) 418
AlwI GGATC 1 cut(s) 17
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 1 cut(s) 22
ApoI RAATTY 2 cut(s) 116, 472
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 2 cut(s) 16, 241
AsuHPI GGTGA 1 cut(s) 285
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 441, 452
Bbv12I GWGCWC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 495
BccI CCATC 3 cut(s) 304, 322, 415
BcnI CCSGG 2 cut(s) 16, 241
BfaI CTAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 16, 241
Bme18I GGWCC 1 cut(s) 348
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 3 cut(s) 87, 337, 350
BmrFI CCNGG 2 cut(s) 16, 241
BmsI GCATC 2 cut(s) 69, 226
BpiI GAAGAC 2 cut(s) 441, 452
Bpu10I CCTNAGC 1 cut(s) 495
BpuMI CCSGG 2 cut(s) 16, 241
Bsa29I ATCGAT 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 15, 393
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 345, 362
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 15, 393
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 3 cut(s) 82, 345, 362
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 328, 331
Bsh1236I CGCG 2 cut(s) 192, 465
BshFI GGCC 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 15, 240
BslFI GGGAC 2 cut(s) 211, 334
BslI CCNNNNNNNGG 3 cut(s) 82, 345, 362
BsmFI GGGAC 2 cut(s) 211, 334
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 6 cut(s) 7, 69, 190, 254, 353, 465
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 487
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 2 cut(s) 192, 465
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 87, 337, 350
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 15, 393
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 393
Bst4CI ACNGT 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 22, 414
BstDEI CTNAG 1 cut(s) 495
BstEII GGTNACC 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 192, 465
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 14, 239
BstUI CGCG 2 cut(s) 192, 465
BstV2I GAAGAC 2 cut(s) 441, 452
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 70, 207
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 22, 414
CciI TCATGA 1 cut(s) 450
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 348
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 2 cut(s) 163, 203
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 2 cut(s) 213, 451
CviJI RGCY 7 cut(s) 20, 24, 88, 218, 288, 336, 511
CviKI_1 RGCY 7 cut(s) 20, 24, 88, 218, 288, 336, 511
CviQI GTAC 2 cut(s) 163, 203
DdeI CTNAG 1 cut(s) 495
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 343
Eco91I GGTNACC 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 348
EcoO65I GGTNACC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 2 cut(s) 216, 454
FaiI YATR 3 cut(s) 171, 214, 452
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 2 cut(s) 211, 334
FatI CATG 2 cut(s) 212, 450
FauI CCCGC 1 cut(s) 360
FokI GGATG 1 cut(s) 512
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 15, 240
HhaI GCGC 1 cut(s) 194
Hin1II CATG 2 cut(s) 216, 454
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 482
HpaII CCGG 2 cut(s) 15, 240
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 179, 451
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 176, 472
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 216, 454
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 85, 341
LpnPI CCDG 6 cut(s) 6, 28, 90, 185, 230, 253
LweI GCATC 2 cut(s) 69, 226
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 4 cut(s) 152, 437, 446, 452
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 3 cut(s) 116, 378, 472
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 8 cut(s) 40, 41, 99, 239, 339, 349, 352, 490
MspI CCGG 2 cut(s) 15, 240
MspR9I CCNGG 2 cut(s) 16, 241
MvnI CGCG 2 cut(s) 192, 465
MwoI GCNNNNNNNGC 1 cut(s) 66
NciI CCSGG 2 cut(s) 16, 241
NdeII GATC 1 cut(s) 9
NlaIII CATG 2 cut(s) 216, 454
NlaIV GGNNCC 3 cut(s) 87, 337, 350
PaeR7I CTCGAG 1 cut(s) 343
PagI TCATGA 1 cut(s) 450
PfeI GAWTC 1 cut(s) 482
PpuMI RGGWCCY 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 348
PspEI GGTNACC 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 87, 337, 350
PspPI GGNCC 1 cut(s) 348
PspPPI RGGWCCY 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 343
RsaI GTAC 2 cut(s) 164, 204
RsaNI GTAC 2 cut(s) 163, 203
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 16, 241
SduI GDGCHC 1 cut(s) 418
SetI ASST 5 cut(s) 168, 249, 350, 460, 513
SfaNI GCATC 2 cut(s) 69, 226
Sfr274I CTCGAG 1 cut(s) 343
SinI GGWCC 1 cut(s) 348
SlaI CTCGAG 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 3 cut(s) 116, 378, 472
SsiI CCGC 6 cut(s) 7, 69, 190, 254, 353, 465
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 14, 239
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 489
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 234, 344
TasI AATT 3 cut(s) 116, 378, 472
TfiI GAWTC 1 cut(s) 482
TscAI CASTG 2 cut(s) 70, 214
TspDTI ATGAA 1 cut(s) 467
TspRI CASTG 2 cut(s) 70, 214
VpaK11BI GGWCC 1 cut(s) 348
XagI CCTNNNNNAGG 1 cut(s) 343
XapI RAATTY 2 cut(s) 116, 472
XbaI TCTAGA 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 343
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.