Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019328

Physical Location & Seq

Genomic Coordinates Forward (+)

604642 .. 610040

Gene Structure 5399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG002800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACCCTCTCAAATTCTTATATGTTATAATAAGGCTAGATCGAGCTAGCTCTTCACATGTTGCACTCTTGCTCTCGCAAATGCCAGAGAAACTAGTTGGGGAAGGAATGGAAAGAGAATGTTTTTATGATGCTGTGAATGTCATTCTTTCTTTACAAAGCATCAGTGGCGGTTTCCCTGCTTGGGAGCCTCAAAGAGCATTTCGTTGGTTGGAGAAATTCAACCCCACAGAGTTCTTTGAAGATACTCTTATTGAACGAGAGTACGTTTATACAAATCTAGAAGGCAACCGCGCTAATCTGGTACACACCGCATGGGCTTTATTGTCCCTCATCGATGCCGGGCAGGTCAACATATATAATAATTATCATTATACCACATATCTTAACCAACATATAAATTTAGACCCAAATTATATCTTAAATTTGGTGATCAAATTCAGGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042299 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

150

Amino Acids

17.54

Weight (kDa)

5.3

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019328)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19900
rosa_samantha	Rh2BG479000 Rh4AG002700 Rh4CG002800 Rh4CG002900 Rh4CG083400 Rh4DG002000 Rh7CG366900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	337
AccII	CGCG	1 cut(s)	294
AciI	CCGC	3 cut(s)	171, 292, 312
AcsI	RAATTY	5 cut(s)	14, 218, 400, 424, 437
AfaI	GTAC	2 cut(s)	266, 306
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	223, 242, 257
AhlI	ACTAGT	1 cut(s)	94
AluBI	AGCT	2 cut(s)	47, 51
AluI	AGCT	2 cut(s)	47, 51
ApoI	RAATTY	5 cut(s)	14, 218, 400, 424, 437
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	442
AsuNHI	GCTAGC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	343
BcuI	ACTAGT	1 cut(s)	94
BfaI	CTAG	4 cut(s)	38, 48, 95, 281
BfuAI	ACCTGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 189
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	3 cut(s)	121, 171, 328
BmtI	GCTAGC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	40, 432
BspACI	CCGC	3 cut(s)	171, 292, 312
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	6, 189
BspMI	ACCTGC	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	58
BssMI	GATC	2 cut(s)	40, 432
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	43, 435
BstMBI	GATC	2 cut(s)	40, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	336
BsuTUI	ATCGAT	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	336
Csp6I	GTAC	2 cut(s)	265, 305
CviAII	CATG	2 cut(s)	59, 315
CviJI	RGCY	5 cut(s)	37, 47, 51, 190, 320
CviKI_1	RGCY	5 cut(s)	37, 47, 51, 190, 320
CviQI	GTAC	2 cut(s)	265, 305
DpnI	GATC	2 cut(s)	42, 434
DpnII	GATC	2 cut(s)	40, 432
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	4
FaeI	CATG	2 cut(s)	62, 318
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	58, 314
FbaI	TGATCA	1 cut(s)	432
FspBI	CTAG	4 cut(s)	38, 48, 95, 281
GlaI	GCGC	1 cut(s)	295
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	62, 318
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	307, 352
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	307, 352
HpyAV	CCTTC	2 cut(s)	98, 278
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	62, 318
HspAI	GCGC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	40, 432
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	6 cut(s)	99, 192, 287, 332, 355, 427
LweI	GCATC	3 cut(s)	121, 171, 328
MaeI	CTAG	4 cut(s)	38, 48, 95, 281
MaeII	ACGT	1 cut(s)	267
MalI	GATC	2 cut(s)	42, 434
MboI	GATC	2 cut(s)	40, 432
MboII	GAAGA	2 cut(s)	45, 254
MluCI	AATT	7 cut(s)	14, 218, 364, 400, 412, 424, 437
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	3 cut(s)	18, 201, 341
MseI	TTAA	2 cut(s)	387, 422
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	40, 432
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	62, 318
NlaIV	GGNNCC	2 cut(s)	6, 189
NspI	RCATGY	1 cut(s)	62
PciI	ACATGT	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	6, 189
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	266, 306
RsaNI	GTAC	2 cut(s)	265, 305
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	387, 422
Sau3AI	GATC	2 cut(s)	40, 432
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	343
SetI	ASST	4 cut(s)	49, 53, 270, 351
SfaNI	GCATC	3 cut(s)	121, 171, 328
SinI	GGWCC	1 cut(s)	4
SpeI	ACTAGT	1 cut(s)	94
Sse9I	AATT	7 cut(s)	14, 218, 364, 400, 412, 424, 437
SsiI	CCGC	3 cut(s)	171, 292, 312
SspMI	CTAG	4 cut(s)	38, 48, 95, 281
StyD4I	CCNGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	43, 336
TasI	AATT	7 cut(s)	14, 218, 364, 400, 412, 424, 437
Tru1I	TTAA	2 cut(s)	387, 422
Tru9I	TTAA	2 cut(s)	387, 422
TscAI	CASTG	1 cut(s)	172
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	5 cut(s)	14, 218, 400, 424, 437
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	62
XspI	CTAG	4 cut(s)	38, 48, 95, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.