pycom16g22240

Muniscin C-terminal mu homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012011
Physical Location & Seq
Forward (+)
21863065 .. 21863502
438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGTTTCTGTCCGCCCGGGCCCTCGTCGCCGTCTCCTCCTTCCGCCAGACCCGCCTAGCTTTCGCCACCCCACACCACCAAAGACAATTCCCACATCCACCCCGACTCTTCCTCCGATGCCACCGCCGACTTCATCACCTCCCTTAGCGACGACCCGCTTGTCGCCTCAAGCGGCCAGCTCATCGTGGGGGTTGAATCTCGGTATATACTGGGTCGTTTACCGTCTAGTCAACTCCATCTACGTCCTCGACGTCACCATCGCCGATCACGACAACTTGATCAACGTCTTCGAGTGCATCCACATCGTCAACCAGGCTGTCATCGTCATCGTCACTGTTTGCTGCAACGTCGATGTTACTCCAGAGAAGCTGAGTCGAAAGTACGCCGAGATCTACATTGCTCTCAATATTGTTCTAAGAGGTATCAGCAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
muHD

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

9.22

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57460
fragaria_vesca FvH4_5g27790
malus_domestica MD13G1254300.v1.1 MD13G1254800.v1.1 MD16G1258100.v1.1
prunus_persica Prupe.2G007900_v2.0.a1
pyrus_communis pycom16g22240 pycom16g22250
rosa_chinensis RchiOBHm_Chr4g0402481
rosa_laevigata RLG00000009080
rosa_multiflora Rmu_co8490925.1_g000001 Rmu_ssc0000330.1_g000030
rosa_roxburghii Rroxscaffold_5G00347170
rosa_rugosa Rorug04G0035800
rosa_samantha Rh4AG113000 Rh4BG105600 Rh4CG120000 Rh4DG105000
rosa_wichuraiana Rw4G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AatII GACGTC 1 cut(s) 255
AciI CCGC 6 cut(s) 13, 44, 53, 125, 157, 173
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 383
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 3 cut(s) 60, 180, 370
AluI AGCT 3 cut(s) 60, 180, 370
Alw26I GTCTC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 2 cut(s) 19, 174
ApaI GGGCCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 19, 20
AsuC2I CCSGG 2 cut(s) 17, 18
AsuHPI GGTGA 2 cut(s) 129, 247
AvaI CYCGRG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 245, 266
BceAI ACGGC 1 cut(s) 15
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciT130I CCWGG 1 cut(s) 314
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 2 cut(s) 17, 18
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 2 cut(s) 57, 227
BglII AGATCT 1 cut(s) 390
BisI GCNGC 2 cut(s) 174, 343
BlsI GCNGC 2 cut(s) 175, 344
Bme1390I CCNGG 3 cut(s) 17, 18, 314
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 19, 20
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 3 cut(s) 17, 18, 314
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 2 cut(s) 108, 306
BmuI ACTGGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 2 cut(s) 17, 18
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 95, 297
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 23
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 2 cut(s) 21, 176
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsnI GGCC 2 cut(s) 21, 176
BsoBI CYCGRG 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 3 cut(s) 265, 279, 390
BspACI CCGC 6 cut(s) 13, 44, 53, 125, 157, 173
BspANI GGCC 2 cut(s) 21, 176
BspCNI CTCAG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 3 cut(s) 265, 279, 390
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 224, 337
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 145, 371, 416
BstF5I GGATG 2 cut(s) 95, 297
BstKTI GATC 3 cut(s) 268, 282, 393
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 265, 279, 390
BstMWI GCNNNNNNNGC 2 cut(s) 27, 52
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 3 cut(s) 15, 16, 312
BstSLI GKGCMC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BsuRI GGCC 2 cut(s) 21, 176
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 95, 297
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 19, 20
Cfr9I CCCGGG 1 cut(s) 16
Csp6I GTAC 1 cut(s) 382
CviJI RGCY 6 cut(s) 21, 60, 176, 180, 317, 370
CviKI_1 RGCY 6 cut(s) 21, 60, 176, 180, 317, 370
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 3 cut(s) 145, 371, 416
DpnI GATC 3 cut(s) 267, 281, 392
DpnII GATC 3 cut(s) 265, 279, 390
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 23
Esp3I CGTCTC 1 cut(s) 38
FaiI YATR 2 cut(s) 206, 208
FauI CCCGC 2 cut(s) 60, 164
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 174, 343
FokI GGATG 2 cut(s) 82, 284
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 174, 343
FspBI CTAG 2 cut(s) 57, 227
GluI GCNGC 2 cut(s) 174, 343
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 2 cut(s) 21, 176
HapII CCGG 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 252
HincII GTYRAC 2 cut(s) 232, 310
HindII GTYRAC 2 cut(s) 232, 310
HinfI GANTC 3 cut(s) 106, 196, 373
HpaII CCGG 1 cut(s) 17
HphI GGTGA 2 cut(s) 129, 247
Hpy166II GTNNAC 3 cut(s) 220, 232, 310
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 2 cut(s) 269, 362
Hpy8I GTNNAC 3 cut(s) 220, 232, 310
Hpy99I CGWCG 4 cut(s) 30, 154, 254, 353
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 224, 337
HpyCH4IV ACGT 4 cut(s) 243, 252, 285, 348
HpyCH4V TGCA 2 cut(s) 297, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 52
HpyF3I CTNAG 3 cut(s) 145, 371, 416
HpySE526I ACGT 4 cut(s) 243, 252, 285, 348
Hsp92I GRCGYC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 3 cut(s) 265, 279, 390
LpnPI CCDG 7 cut(s) 30, 60, 190, 196, 299, 326, 375
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 108, 306
MaeI CTAG 2 cut(s) 57, 227
MaeII ACGT 4 cut(s) 243, 252, 285, 348
MaeIII GTNAC 3 cut(s) 253, 331, 355
MalI GATC 3 cut(s) 267, 281, 392
MboI GATC 3 cut(s) 265, 279, 390
MboII GAAGA 2 cut(s) 101, 280
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 1 cut(s) 87
MlyI GAGTC 2 cut(s) 100, 382
MnlI CCTC 7 cut(s) 33, 47, 123, 150, 177, 257, 413
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 3 cut(s) 17, 18, 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 27, 52
NciI CCSGG 2 cut(s) 17, 18
NdeII GATC 3 cut(s) 265, 279, 390
NlaIV GGNNCC 1 cut(s) 21
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 2 cut(s) 253, 331
PcsI WCGNNNNNNNCGW 2 cut(s) 249, 267
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 175, 344
PleI GAGTC 2 cut(s) 100, 381
PpsI GAGTC 2 cut(s) 100, 381
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 21
PspOMI GGGCCC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 19, 20
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SatI GCNGC 2 cut(s) 174, 343
Sau3AI GATC 3 cut(s) 265, 279, 390
Sau96I GGNCC 2 cut(s) 19, 20
SchI GAGTC 2 cut(s) 100, 382
ScrFI CCNGG 3 cut(s) 17, 18, 314
SduI GDGCHC 1 cut(s) 23
SetI ASST 9 cut(s) 62, 142, 182, 246, 255, 288, 351, 372, 424
SfaNI GCATC 2 cut(s) 108, 306
SmaI CCCGGG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SrfI GCCCGGGC 1 cut(s) 18
Sse9I AATT 1 cut(s) 87
SsiI CCGC 6 cut(s) 13, 44, 53, 125, 157, 173
SspI AATATT 2 cut(s) 409, 433
SspMI CTAG 2 cut(s) 57, 227
StyD4I CCNGG 3 cut(s) 15, 16, 312
TaaI ACNGT 2 cut(s) 224, 337
TaiI ACGT 4 cut(s) 246, 255, 288, 351
TaqI TCGA 4 cut(s) 249, 291, 351, 376
TasI AATT 1 cut(s) 87
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 196
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 253, 331
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 2 cut(s) 253, 331
TspDTI ATGAA 1 cut(s) 123
TspMI CCCGGG 1 cut(s) 16
TspRI CASTG 1 cut(s) 340
XmaI CCCGGG 1 cut(s) 16
XspI CTAG 2 cut(s) 57, 227
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.