Rmu_ssc0000330.1_g000030

Muniscin C-terminal mu homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000330.1
OG0012011
Physical Location & Seq
Reverse (-)
171508 .. 173436
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000330.1_g000030.1.cds

Sequence Viewer

Length: 1929 bp
atgtcttgcttagccctctctctccaacccgccaatggatccgacatcctgctccaaacccgagaatggttccctccggcccgagccctcgtcgccgtctcctccttccgcgaaacccgcctcgccttcgccgcctcaaagcaacagcagcaactccacaaccagagcaaagaccacgccaacaactccgactcctccgccgattccatcgcctccctcggcgacgaccccctcgccgcctccagcggccagctcatcgtcggcgtcgagagccgcttccgcgtcgtgtaccgcctggtgaactccatctacgtcctcgggatcaccaccgccgaccacgacaactccatcaacgtcttcgagtgcatccacatcgtcaaccaggccgtcagcgtcgtcgtcactgcctgccgcggcgttgacgtcacgccggagaagctcgcccgcaagtacgccgagatctacatggcgctcgacatcgtcctccgcggcgtcagcaacatccgcctggcggcgatgctgtcgtcgatgcacggcgacggcattgccaagatggtgcactcggcgctggacaccgagaacaaggtccgaggagccgagagctggagaggcattgaggtgcttgcggtggagcacgaggccggaattatggcgttcaacaatacgacgttcgagttgccgccggagacgatcgccgccggggacgaggtggcggcgagtctggcgccggtggtacagaccgaggacaagcaagaggaggaggaagagagtgaagcagagaaagatccgtttgcagctagtgagaagattaatcaacctgaagaattggtgactggattcaagaagaataaggatccttccgcgacggatttaacactggcattgtctactcttgaggtgacgacattgccccctgcagaggccacacagtctactcacattgcggtcgaagggtttgaaggggagtatggtgggattgagtttgggaatgagcaggcttctttgaatgaggcttttgaagggttttcggatgcttggggtggtggtttggatgcttctgagttcgttggcacaaagaaggttgtgaagtcgcaagggcttggtgggcttgaattgttgcagaccggaccggatcctcctaaagctgctggtgctgctgcagcaggtactcctctcgaggaacttgtaggaaaaactgaaatgaagggtcctgagatgaacattgtggaagagatcaatgttgagtttagggaatcattacttgctagagtagcattaaagggtgttgtttatttgaaaactttgccaaccaaaactagtggtgataaggaaactgagttttccttcagggttgagggaaccactgcagttaaaaggtttgttatgcagaattctcgaattagtagtctaggcaatgggatgtttcatgtgagaactgcggcctctgatgagcctttgcccattttgaagtatagtttgcaacctaggttaaccccattgcctttgagggttcgtcttgtgcaacgtcacacaggaagcttgctgtcagtgatgatacaatatgtgtcgaaccctgagttgccggcacctttgactgatgtcacatttattgtgaaactgccccttgaccctacattgctgaaggtctcaccgaaagctgtattaaatcggtctgagaaagaactgaaatggcatgtccctgagattccgttgaatggaccgcctggtcggttgagggtgaggatgcctgtagattctaatgaagaagatggtggtgaggagattgaggttgttgcctatgtgaaattttcttggcaaggaaacagatcattgtctggagtttgtctgcgcccagcttctgagggtaagacagacttttatgaggttaatcacaggtatgagagtggggtatatatgtgcaacccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
muHD

Protein Analysis

642

Amino Acids

69.7

Weight (kDa)

5.03

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57460
fragaria_vesca FvH4_5g27790
malus_domestica MD13G1254300.v1.1 MD13G1254800.v1.1 MD16G1258100.v1.1
prunus_persica Prupe.2G007900_v2.0.a1
pyrus_communis pycom16g22240 pycom16g22250
rosa_chinensis RchiOBHm_Chr4g0402481
rosa_laevigata RLG00000009080
rosa_multiflora Rmu_co8490925.1_g000001 Rmu_ssc0000330.1_g000030
rosa_roxburghii Rroxscaffold_5G00347170
rosa_rugosa Rorug04G0035800
rosa_samantha Rh4AG113000 Rh4BG105600 Rh4CG120000 Rh4DG105000
rosa_wichuraiana Rw4G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1725
AatII GACGTC 1 cut(s) 426
Acc36I ACCTGC 1 cut(s) 1154
AccB1I GGYRCC 2 cut(s) 724, 1585
AccI GTMKAC 2 cut(s) 887, 932
AccII CGCG 5 cut(s) 111, 282, 414, 489, 863
AclWI GGATC 8 cut(s) 33, 46, 329, 779, 848, 861, 1127, 1140
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 1390, 1805
AcuI CTGAAG 3 cut(s) 840, 1330, 1661
AcyI GRCGYC 4 cut(s) 264, 423, 492, 725
AfaI GTAC 4 cut(s) 290, 452, 735, 1168
AfiI CCNNNNNNNGG 6 cut(s) 35, 66, 511, 603, 919, 1715
AgsI TTSAA 9 cut(s) 658, 841, 959, 1006, 1019, 1112, 1297, 1468, 1714
AhlI ACTAGT 1 cut(s) 1316
AjnI CCWGG 4 cut(s) 294, 381, 507, 1723
AluBI AGCT 8 cut(s) 253, 439, 603, 797, 1145, 1539, 1658, 1856
AluI AGCT 8 cut(s) 253, 439, 603, 797, 1145, 1539, 1658, 1856
Alw21I GWGCWC 2 cut(s) 561, 636
Alw26I GTCTC 3 cut(s) 103, 680, 1651
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 8 cut(s) 33, 46, 329, 779, 848, 861, 1127, 1140
AlwNI CAGNNNCTG 1 cut(s) 1859
Ama87I CYCGRG 4 cut(s) 60, 81, 317, 1175
AoxI GGCC 6 cut(s) 78, 247, 384, 639, 921, 1440
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 6 cut(s) 148, 794, 1145, 1154, 1157, 1160
ApoI RAATTY 2 cut(s) 1390, 1805
ArsI GACNNNNNNTTYG 2 cut(s) 1390, 1422
AseI ATTAAT 1 cut(s) 810
AspA2I CCTAGG 1 cut(s) 1484
AspLEI GCGC 4 cut(s) 472, 568, 727, 1851
AspS9I GGNCC 5 cut(s) 79, 586, 1127, 1208, 1718
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 8 cut(s) 310, 316, 841, 910, 1334, 1641, 1750, 1787
AvaI CYCGRG 4 cut(s) 60, 81, 317, 1175
AvaII GGWCC 4 cut(s) 586, 1127, 1208, 1718
AvrII CCTAGG 1 cut(s) 1484
BaeGI GKGCMC 1 cut(s) 561
BamHI GGATCC 3 cut(s) 38, 853, 1132
BanI GGYRCC 2 cut(s) 724, 1585
BanII GRGCYC 1 cut(s) 88
BauI CACGAG 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 561, 636
BbvI GCAGC 6 cut(s) 160, 806, 1132, 1141, 1144, 1172
BccI CCATC 5 cut(s) 215, 314, 356, 547, 1763
BceAI ACGGC 4 cut(s) 80, 371, 550, 556
BcgI CGANNNNNNTGC 6 cut(s) 355, 389, 527, 561, 1376, 1410
BciT130I CCWGG 4 cut(s) 296, 383, 509, 1725
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 3 cut(s) 103, 680, 1651
BcuI ACTAGT 1 cut(s) 1316
BfaI CTAG 5 cut(s) 798, 1266, 1317, 1409, 1485
BfmI CTRYAG 4 cut(s) 915, 1158, 1365, 1749
BfoI RGCGCY 3 cut(s) 473, 569, 728
BfuAI ACCTGC 1 cut(s) 1154
BglII AGATCT 1 cut(s) 459
BlnI CCTAGG 1 cut(s) 1484
BlpI GCTNAGC 1 cut(s) 10
Bme1390I CCNGG 5 cut(s) 296, 383, 509, 700, 1725
Bme18I GGWCC 4 cut(s) 586, 1127, 1208, 1718
BmeT110I CYCGRG 4 cut(s) 60, 81, 317, 1175
BmgT120I GGNCC 5 cut(s) 79, 586, 1127, 1208, 1718
BmiI GGNNCC 9 cut(s) 40, 71, 595, 726, 855, 1134, 1209, 1360, 1587
BmrFI CCNGG 5 cut(s) 296, 383, 509, 700, 1725
BmsI GCATC 6 cut(s) 375, 507, 519, 1021, 1042, 1734
BoxI GACNNNNGTC 1 cut(s) 1598
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 3 cut(s) 226, 625, 1857
Bpu1102I GCTNAGC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 914
BpuMI CCSGG 1 cut(s) 700
BsaHI GRCGYC 4 cut(s) 264, 423, 492, 725
BsaI GGTCTC 1 cut(s) 1651
BsaJI CCNNGG 8 cut(s) 217, 316, 412, 487, 589, 699, 741, 1484
BsaWI WCCGGW 2 cut(s) 1124, 1129
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 329, 359
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 66, 511, 603, 919, 1715
Bse118I RCCGGY 2 cut(s) 727, 1582
Bse1I ACTGG 2 cut(s) 838, 882
Bse3DI GCAATG 6 cut(s) 543, 905, 939, 1420, 1496, 1634
BseBI CCWGG 4 cut(s) 296, 383, 509, 1725
BseDI CCNNGG 8 cut(s) 217, 316, 412, 487, 589, 699, 741, 1484
BseGI GGATG 7 cut(s) 45, 366, 501, 1036, 1057, 1425, 1749
BseLI CCNNNNNNNGG 6 cut(s) 35, 66, 511, 603, 919, 1715
BseMI GCAATG 6 cut(s) 543, 905, 939, 1420, 1496, 1634
BseMII CTCAG 7 cut(s) 1050, 1203, 1326, 1566, 1665, 1692, 1851
BseNI ACTGG 2 cut(s) 838, 882
BseRI GAGGAG 7 cut(s) 91, 184, 606, 770, 773, 1161, 1793
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 6 cut(s) 160, 806, 1132, 1141, 1144, 1172
BseYI CCCAGC 1 cut(s) 1852
Bsh1236I CGCG 5 cut(s) 111, 282, 414, 489, 863
Bsh1285I CGRYCG 2 cut(s) 693, 948
BshFI GGCC 6 cut(s) 80, 249, 386, 641, 923, 1442
BshNI GGYRCC 2 cut(s) 724, 1585
BsiEI CGRYCG 2 cut(s) 693, 948
BsiHKAI GWGCWC 2 cut(s) 561, 636
BsiHKCI CYCGRG 4 cut(s) 60, 81, 317, 1175
BsiSI CCGG 9 cut(s) 77, 431, 642, 683, 699, 728, 1125, 1130, 1583
BslFI GGGAC 2 cut(s) 716, 1682
BslI CCNNNNNNNGG 6 cut(s) 35, 66, 511, 603, 919, 1715
BsmAI GTCTC 3 cut(s) 103, 680, 1651
BsmBI CGTCTC 2 cut(s) 103, 680
BsmFI GGGAC 2 cut(s) 716, 1682
BsnI GGCC 6 cut(s) 80, 249, 386, 641, 923, 1442
Bso31I GGTCTC 1 cut(s) 1651
BsoBI CYCGRG 4 cut(s) 60, 81, 317, 1175
Bsp1286I GDGCHC 3 cut(s) 88, 561, 636
Bsp143I GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
Bsp1720I GCTNAGC 1 cut(s) 10
BspANI GGCC 6 cut(s) 80, 249, 386, 641, 923, 1442
BspCNI CTCAG 7 cut(s) 1051, 1204, 1327, 1567, 1666, 1693, 1852
BspFNI CGCG 5 cut(s) 111, 282, 414, 489, 863
BspLI GGNNCC 9 cut(s) 40, 71, 595, 726, 855, 1134, 1209, 1360, 1587
BspMAI CTGCAG 3 cut(s) 919, 1162, 1369
BspMI ACCTGC 1 cut(s) 1154
BspPI GGATC 8 cut(s) 33, 46, 329, 779, 848, 861, 1127, 1140
BspT107I GGYRCC 2 cut(s) 724, 1585
BspTNI GGTCTC 1 cut(s) 1651
BsrDI GCAATG 6 cut(s) 543, 905, 939, 1420, 1496, 1634
BsrFI RCCGGY 2 cut(s) 727, 1582
BsrI ACTGG 2 cut(s) 838, 882
BssAI RCCGGY 2 cut(s) 727, 1582
BssECI CCNNGG 8 cut(s) 217, 316, 412, 487, 589, 699, 741, 1484
BssMI GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
BssNI GRCGYC 4 cut(s) 264, 423, 492, 725
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 1484
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 4 cut(s) 296, 383, 509, 1725
Bst4CI ACNGT 1 cut(s) 930
Bst6I CTCTTC 2 cut(s) 759, 1224
BstACI GRCGYC 4 cut(s) 264, 423, 492, 725
BstC8I GCNNGC 8 cut(s) 251, 409, 441, 445, 624, 996, 1541, 1584
BstDEI CTNAG 8 cut(s) 10, 1059, 1212, 1335, 1575, 1674, 1701, 1860
BstDSI CCRYGG 2 cut(s) 412, 487
BstF5I GGATG 7 cut(s) 45, 366, 501, 1036, 1057, 1425, 1749
BstFNI CGCG 5 cut(s) 111, 282, 414, 489, 863
BstH2I RGCGCY 3 cut(s) 473, 569, 728
BstHHI GCGC 4 cut(s) 472, 568, 727, 1851
BstKTI GATC 9 cut(s) 41, 324, 462, 693, 787, 856, 1135, 1236, 1829
BstMAI GTCTC 3 cut(s) 103, 680, 1651
BstMBI GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
BstMCI CGRYCG 2 cut(s) 693, 948
BstNI CCWGG 4 cut(s) 296, 383, 509, 1725
BstNSI RCATGY 1 cut(s) 1697
BstPAI GACNNNNGTC 1 cut(s) 1598
BstSCI CCNGG 5 cut(s) 294, 381, 507, 698, 1723
BstSFI CTRYAG 4 cut(s) 915, 1158, 1365, 1749
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 5 cut(s) 111, 282, 414, 489, 863
BstV1I GCAGC 6 cut(s) 160, 806, 1132, 1141, 1144, 1172
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 5 cut(s) 38, 459, 784, 853, 1132
BstYI RGATCY 5 cut(s) 38, 459, 784, 853, 1132
BsuRI GGCC 6 cut(s) 80, 249, 386, 641, 923, 1442
BtgI CCRYGG 2 cut(s) 412, 487
BtgZI GCGATG 2 cut(s) 193, 530
BtsCI GGATG 7 cut(s) 45, 366, 501, 1036, 1057, 1425, 1749
BtsI GCAGTG 2 cut(s) 402, 1362
BtsIMutI CAGTG 4 cut(s) 402, 875, 1362, 1554
BveI ACCTGC 1 cut(s) 1154
Cac8I GCNNGC 8 cut(s) 251, 409, 441, 445, 624, 996, 1541, 1584
CaiI CAGNNNCTG 1 cut(s) 1859
CfoI GCGC 4 cut(s) 472, 568, 727, 1851
Cfr10I RCCGGY 2 cut(s) 727, 1582
Cfr13I GGNCC 5 cut(s) 79, 586, 1127, 1208, 1718
Cfr42I CCGCGG 2 cut(s) 415, 490
CpoI CGGWCCG 1 cut(s) 1127
CseI GACGC 4 cut(s) 253, 271, 382, 481
Csp6I GTAC 4 cut(s) 289, 451, 734, 1167
CspCI CAANNNNNGTGG 2 cut(s) 1300, 1335
CspI CGGWCCG 1 cut(s) 1127
CviAII CATG 4 cut(s) 466, 1427, 1694, 1926
CviQI GTAC 4 cut(s) 289, 451, 734, 1167
DdeI CTNAG 8 cut(s) 10, 1059, 1212, 1335, 1575, 1674, 1701, 1860
DinI GGCGCC 1 cut(s) 726
DpnI GATC 9 cut(s) 40, 323, 461, 692, 786, 855, 1134, 1235, 1828
DpnII GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
DrdI GACNNNNNNGTC 1 cut(s) 1725
DseDI GACNNNNNNGTC 1 cut(s) 1725
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 759, 1224
EarI CTCTTC 2 cut(s) 759, 1224
EciI GGCGGA 2 cut(s) 187, 494
Eco130I CCWWGG 1 cut(s) 1484
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 1651
Eco47I GGWCC 4 cut(s) 586, 1127, 1208, 1718
Eco57I CTGAAG 3 cut(s) 840, 1330, 1661
Eco88I CYCGRG 4 cut(s) 60, 81, 317, 1175
EcoO109I RGGNCCY 1 cut(s) 1208
EcoRI GAATTC 1 cut(s) 1390
EcoRII CCWGG 4 cut(s) 294, 381, 507, 1723
EcoT14I CCWWGG 1 cut(s) 1484
EcoT38I GRGCYC 1 cut(s) 88
EgeI GGCGCC 1 cut(s) 726
EheI GGCGCC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 1484
Esp3I CGTCTC 2 cut(s) 103, 680
FaeI CATG 4 cut(s) 469, 1430, 1697, 1929
FalI AAGNNNNNCTT 2 cut(s) 1859, 1891
FaqI GGGAC 2 cut(s) 716, 1682
FatI CATG 4 cut(s) 465, 1426, 1693, 1925
FauI CCCGC 3 cut(s) 37, 125, 452
FblI GTMKAC 2 cut(s) 887, 932
FokI GGATG 7 cut(s) 32, 353, 488, 1043, 1064, 1432, 1756
FriOI GRGCYC 1 cut(s) 88
FspBI CTAG 5 cut(s) 798, 1266, 1317, 1409, 1485
GlaI GCGC 4 cut(s) 471, 567, 726, 1850
GsaI CCCAGC 1 cut(s) 1856
GsuI CTGGAG 3 cut(s) 226, 625, 1857
HaeII RGCGCY 3 cut(s) 473, 569, 728
HaeIII GGCC 6 cut(s) 80, 249, 386, 641, 923, 1442
HapII CCGG 9 cut(s) 77, 431, 642, 683, 699, 728, 1125, 1130, 1583
HgaI GACGC 4 cut(s) 253, 271, 382, 481
HhaI GCGC 4 cut(s) 472, 568, 727, 1851
Hin1I GRCGYC 4 cut(s) 264, 423, 492, 725
Hin1II CATG 4 cut(s) 469, 1430, 1697, 1929
Hin6I GCGC 4 cut(s) 470, 566, 725, 1849
HinP1I GCGC 4 cut(s) 470, 566, 725, 1849
HincII GTYRAC 3 cut(s) 379, 421, 1491
HindII GTYRAC 3 cut(s) 379, 421, 1491
HindIII AAGCTT 1 cut(s) 1537
HinfI GANTC 7 cut(s) 191, 203, 718, 837, 1253, 1705, 1754
HpaI GTTAAC 1 cut(s) 1491
HpaII CCGG 9 cut(s) 77, 431, 642, 683, 699, 728, 1125, 1130, 1583
HphI GGTGA 8 cut(s) 310, 316, 841, 910, 1334, 1641, 1750, 1787
Hpy166II GTNNAC 8 cut(s) 289, 301, 379, 421, 559, 888, 933, 1491
Hpy188I TCNGA 8 cut(s) 43, 190, 590, 1030, 1060, 1447, 1675, 1861
Hpy188III TCNNGA 8 cut(s) 268, 319, 841, 893, 1175, 1211, 1395, 1836
Hpy8I GTNNAC 8 cut(s) 289, 301, 379, 421, 559, 888, 933, 1491
HpyCH4III ACNGT 1 cut(s) 930
HpyCH4IV ACGT 5 cut(s) 312, 354, 423, 668, 1525
HpyF3I CTNAG 8 cut(s) 10, 1059, 1212, 1335, 1575, 1674, 1701, 1860
HpySE526I ACGT 5 cut(s) 312, 354, 423, 668, 1525
Hsp92I GRCGYC 4 cut(s) 264, 423, 492, 725
Hsp92II CATG 4 cut(s) 469, 1430, 1697, 1929
HspAI GCGC 4 cut(s) 470, 566, 725, 1849
KasI GGCGCC 1 cut(s) 724
KroI GCCGGC 1 cut(s) 1582
KroNI GCCGGC 1 cut(s) 1584
KspAI GTTAAC 1 cut(s) 1491
KspI CCGCGG 2 cut(s) 415, 490
Kzo9I GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
LmnI GCTCC 3 cut(s) 57, 593, 631
Lsp1109I GCAGC 6 cut(s) 160, 806, 1132, 1141, 1144, 1172
LweI GCATC 6 cut(s) 375, 507, 519, 1021, 1042, 1734
MaeI CTAG 5 cut(s) 798, 1266, 1317, 1409, 1485
MaeII ACGT 5 cut(s) 312, 354, 423, 668, 1525
MaeIII GTNAC 6 cut(s) 400, 424, 829, 898, 1526, 1600
MalI GATC 9 cut(s) 40, 323, 461, 692, 786, 855, 1134, 1235, 1828
MboI GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
MboII GAAGA 8 cut(s) 349, 776, 817, 833, 856, 1241, 1775, 1778
MflI RGATCY 5 cut(s) 38, 459, 784, 853, 1132
MhlI GDGCHC 3 cut(s) 88, 561, 636
MluCI AATT 6 cut(s) 645, 824, 1112, 1390, 1398, 1805
Mly113I GGCGCC 1 cut(s) 725
MlyI GAGTC 2 cut(s) 185, 727
MmeI TCCRAC 3 cut(s) 49, 66, 213
MroNI GCCGGC 1 cut(s) 1582
MseI TTAA 7 cut(s) 810, 872, 1277, 1371, 1490, 1664, 1887
MslI CAYNNNNRTG 2 cut(s) 617, 1896
MspA1I CMGCKG 3 cut(s) 246, 414, 489
MspI CCGG 9 cut(s) 77, 431, 642, 683, 699, 728, 1125, 1130, 1583
MspR9I CCNGG 5 cut(s) 296, 383, 509, 700, 1725
MvaI CCWGG 4 cut(s) 296, 383, 509, 1725
MvnI CGCG 5 cut(s) 111, 282, 414, 489, 863
NaeI GCCGGC 1 cut(s) 1584
NarI GGCGCC 1 cut(s) 725
NciI CCSGG 1 cut(s) 700
NdeII GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
NgoMIV GCCGGC 1 cut(s) 1582
NlaIII CATG 4 cut(s) 469, 1430, 1697, 1929
NlaIV GGNNCC 9 cut(s) 40, 71, 595, 726, 855, 1134, 1209, 1360, 1587
NmeAIII GCCGAG 4 cut(s) 198, 481, 542, 622
NmuCI GTSAC 6 cut(s) 400, 424, 829, 898, 1526, 1600
NspI RCATGY 1 cut(s) 1697
PaeR7I CTCGAG 1 cut(s) 1175
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 1584
PfeI GAWTC 5 cut(s) 203, 837, 1253, 1705, 1754
PflFI GACNNNGTC 1 cut(s) 479
Ple19I CGATCG 1 cut(s) 693
PleI GAGTC 2 cut(s) 185, 726
PluTI GGCGCC 1 cut(s) 728
PpsI GAGTC 2 cut(s) 185, 726
PpuMI RGGWCCY 1 cut(s) 1208
PshAI GACNNNNGTC 1 cut(s) 1598
PshBI ATTAAT 1 cut(s) 810
Psp5II RGGWCCY 1 cut(s) 1208
Psp6I CCWGG 4 cut(s) 294, 381, 507, 1723
PspFI CCCAGC 1 cut(s) 1852
PspGI CCWGG 4 cut(s) 294, 381, 507, 1723
PspN4I GGNNCC 9 cut(s) 40, 71, 595, 726, 855, 1134, 1209, 1360, 1587
PspPI GGNCC 5 cut(s) 79, 586, 1127, 1208, 1718
PspPPI RGGWCCY 1 cut(s) 1208
PsrI GAACNNNNNNTAC 2 cut(s) 293, 325
PstI CTGCAG 3 cut(s) 919, 1162, 1369
PstNI CAGNNNCTG 1 cut(s) 1859
PsuI RGATCY 5 cut(s) 38, 459, 784, 853, 1132
PsyI GACNNNGTC 1 cut(s) 479
PvuI CGATCG 1 cut(s) 693
RsaI GTAC 4 cut(s) 290, 452, 735, 1168
RsaNI GTAC 4 cut(s) 289, 451, 734, 1167
RseI CAYNNNNRTG 2 cut(s) 617, 1896
Rsr2I CGGWCCG 1 cut(s) 1127
RsrII CGGWCCG 1 cut(s) 1127
SacII CCGCGG 2 cut(s) 415, 490
SaqAI TTAA 7 cut(s) 810, 872, 1277, 1371, 1490, 1664, 1887
Sau3AI GATC 9 cut(s) 38, 321, 459, 690, 784, 853, 1132, 1233, 1826
Sau96I GGNCC 5 cut(s) 79, 586, 1127, 1208, 1718
SchI GAGTC 2 cut(s) 185, 727
ScrFI CCNGG 5 cut(s) 296, 383, 509, 700, 1725
SduI GDGCHC 3 cut(s) 88, 561, 636
SfaNI GCATC 6 cut(s) 375, 507, 519, 1021, 1042, 1734
SfcI CTRYAG 4 cut(s) 915, 1158, 1365, 1749
SfoI GGCGCC 1 cut(s) 726
Sfr274I CTCGAG 1 cut(s) 1175
Sfr303I CCGCGG 2 cut(s) 415, 490
SgrAI CRCCGGYG 1 cut(s) 727
SgrBI CCGCGG 2 cut(s) 415, 490
SinI GGWCC 4 cut(s) 586, 1127, 1208, 1718
SlaI CTCGAG 1 cut(s) 1175
SmiMI CAYNNNNRTG 2 cut(s) 617, 1896
SmlI CTYRAG 2 cut(s) 893, 1175
SmoI CTYRAG 2 cut(s) 893, 1175
SpeI ACTAGT 1 cut(s) 1316
Sse9I AATT 6 cut(s) 645, 824, 1112, 1390, 1398, 1805
SspDI GGCGCC 1 cut(s) 724
SspMI CTAG 5 cut(s) 798, 1266, 1317, 1409, 1485
StyD4I CCNGG 5 cut(s) 294, 381, 507, 698, 1723
StyI CCWWGG 1 cut(s) 1484
TaaI ACNGT 1 cut(s) 930
TaiI ACGT 5 cut(s) 315, 357, 426, 671, 1528
TaqI TCGA 9 cut(s) 267, 360, 474, 527, 672, 948, 1176, 1396, 1568
TaqII GACCGA 2 cut(s) 755, 1659
TasI AATT 6 cut(s) 645, 824, 1112, 1390, 1398, 1805
TfiI GAWTC 5 cut(s) 203, 837, 1253, 1705, 1754
Tru1I TTAA 7 cut(s) 810, 872, 1277, 1371, 1490, 1664, 1887
Tru9I TTAA 7 cut(s) 810, 872, 1277, 1371, 1490, 1664, 1887
TscAI CASTG 4 cut(s) 409, 882, 1369, 1554
TseFI GTSAC 6 cut(s) 400, 424, 829, 898, 1526, 1600
TseI GCWGC 6 cut(s) 148, 794, 1145, 1154, 1157, 1160
Tsp45I GTSAC 6 cut(s) 400, 424, 829, 898, 1526, 1600
TspDTI ATGAA 4 cut(s) 1217, 1232, 1415, 1776
TspGWI ACGGA 3 cut(s) 777, 881, 1698
TspRI CASTG 4 cut(s) 409, 882, 1369, 1554
Tth111I GACNNNGTC 1 cut(s) 479
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 4 cut(s) 586, 1127, 1208, 1718
VspI ATTAAT 1 cut(s) 810
XapI RAATTY 2 cut(s) 1390, 1805
XceI RCATGY 1 cut(s) 1697
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 1175
XmaJI CCTAGG 1 cut(s) 1484
XmiI GTMKAC 2 cut(s) 887, 932
XspI CTAG 5 cut(s) 798, 1266, 1317, 1409, 1485
ZraI GACGTC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.