pycom16g22250

Muniscin C-terminal mu homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012011
Physical Location & Seq
Forward (+)
21863881 .. 21864946
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 849 bp
ATGGCGTTGGCGACACTTGAAGTGATGACGTTGGCGACTCCGGCGGAGGCGACCCAGAGTACCCATATTGCGGTGGAAGGGTTTGAAGGTGATGCCTGGGGCGGTGGATTGGATGCTTCTGAGTTTGTTGGATCAAAGAAGGTTGCGAAGAAAGAAGGGCTTAGCGGGCTTGAATTGTTGCAGATCGGGCCTGATGCTCCGAAAACTGCAGATGCCGCTGCCGGTGGTGCAGCAGCGGGTAGTCCTCTTGACACCCTTGTGAAAAGTGAAATGAAGGGTCTTGAGATGCACATTGTTGAAGAGATCAGTGCTGAGTTTAGAGAGACATTGCTTACTATAGTAGGATTAGTGGGTGTTGTTTATTTGAAGACTTTGGCAACCATAACTAGTGGTGATAAAGAAACTGAGTTTTCTTTCCAGGCTGAGGGAACCAGCTCGGTTAAGAGATTTATTATGCAGAATTCTCGAGTTAGTAGTCTAGGGAACAGGTTGTTTCATATGAGCACCACAGCCTCCGATGAGCCTTTACCCATTTTGAAGTATGGTCTGGTGCCTAAGTTGATGCCATTGCCCTTGAGGGTTCGTCTTATGCAACGGCATACATGGAGCTTACTATCTGTGATGATACAATACGTGGATCGATCTCCTGGTCGGTTGAGGGCAAGGATGCCTGTGGATTCTAATGAAGGAGATGGCAGTGAAGAGATTGAAGTTGTTGCTTATGTGAAGCTTTCTTGGCAAGGAACTAAATCATTGTCTGGTGTTTGTTTGCGGCCGGCTTTCGAGGGTAATATAGACTTTTACGAGGTTAATCGCAGGTACGAGAGCGGGGTATACATGTGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
muHD

Protein Analysis

283

Amino Acids

30.53

Weight (kDa)

5.28

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57460
fragaria_vesca FvH4_5g27790
malus_domestica MD13G1254300.v1.1 MD13G1254800.v1.1 MD16G1258100.v1.1
prunus_persica Prupe.2G007900_v2.0.a1
pyrus_communis pycom16g22240 pycom16g22250
rosa_chinensis RchiOBHm_Chr4g0402481
rosa_laevigata RLG00000009080
rosa_multiflora Rmu_co8490925.1_g000001 Rmu_ssc0000330.1_g000030
rosa_roxburghii Rroxscaffold_5G00347170
rosa_rugosa Rorug04G0035800
rosa_samantha Rh4AG113000 Rh4BG105600 Rh4CG120000 Rh4DG105000
rosa_wichuraiana Rw4G009070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 807
AccB1I GGYRCC 1 cut(s) 550
AccBSI CCGCTC 1 cut(s) 828
AccI GTMKAC 1 cut(s) 834
AciI CCGC 8 cut(s) 44, 71, 102, 165, 216, 236, 772, 828
AclWI GGATC 2 cut(s) 139, 645
AcoI YGGCCR 1 cut(s) 773
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 2 cut(s) 61, 821
AfiI CCNNNNNNNGG 2 cut(s) 70, 424
AflIII ACRYGT 1 cut(s) 837
AgsI TTSAA 7 cut(s) 20, 86, 173, 299, 367, 538, 710
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 3 cut(s) 95, 417, 646
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 3 cut(s) 435, 609, 730
AluI AGCT 3 cut(s) 435, 609, 730
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 139, 645
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 2 cut(s) 188, 773
ApeKI GCWGC 3 cut(s) 218, 230, 233
ApoI RAATTY 1 cut(s) 460
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 101, 404
AvaI CYCGRG 1 cut(s) 465
BanI GGYRCC 1 cut(s) 550
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 205, 242, 245
BccI CCATC 1 cut(s) 686
BceAI ACGGC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 3 cut(s) 97, 419, 648
BcoDI GTCTC 1 cut(s) 317
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 2 cut(s) 387, 479
BfmI CTRYAG 2 cut(s) 207, 336
BfuAI ACCTGC 1 cut(s) 807
BisI GCNGC 5 cut(s) 216, 219, 231, 234, 773
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 5 cut(s) 217, 220, 232, 235, 774
Bme1390I CCNGG 3 cut(s) 97, 419, 648
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 430, 552
BmrFI CCNGG 3 cut(s) 97, 419, 648
BmsI GCATC 7 cut(s) 82, 103, 184, 202, 276, 552, 657
BpiI GAAGAC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 2 cut(s) 302, 595
Bsa29I ATCGAT 1 cut(s) 640
BsaAI YACGTR 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 424
Bse118I RCCGGY 2 cut(s) 221, 775
Bse3DI GCAATG 2 cut(s) 326, 566
BseBI CCWGG 3 cut(s) 97, 419, 648
BseCI ATCGAT 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 118, 672
BseLI CCNNNNNNNGG 2 cut(s) 70, 424
BseMI GCAATG 2 cut(s) 326, 566
BseMII CTCAG 4 cut(s) 111, 303, 396, 414
BseX3I CGGCCG 1 cut(s) 773
BseXI GCAGC 3 cut(s) 205, 242, 245
BsgI GTGCAG 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 776
BshFI GGCC 2 cut(s) 190, 775
BshNI GGYRCC 1 cut(s) 550
BshVI ATCGAT 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 3 cut(s) 41, 222, 776
BslI CCNNNNNNNGG 2 cut(s) 70, 424
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 2 cut(s) 190, 775
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 5 cut(s) 131, 183, 303, 637, 641
Bsp1720I GCTNAGC 1 cut(s) 161
BspACI CCGC 8 cut(s) 44, 71, 102, 165, 216, 236, 772, 828
BspANI GGCC 2 cut(s) 190, 775
BspCNI CTCAG 4 cut(s) 112, 304, 397, 415
BspDI ATCGAT 1 cut(s) 640
BspLI GGNNCC 2 cut(s) 430, 552
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 807
BspPI GGATC 2 cut(s) 139, 645
BspT107I GGYRCC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 828
BsrDI GCAATG 2 cut(s) 326, 566
BsrFI RCCGGY 2 cut(s) 221, 775
BssAI RCCGGY 2 cut(s) 221, 775
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 5 cut(s) 131, 183, 303, 637, 641
BssNAI GTATAC 1 cut(s) 835
Bst1107I GTATAC 1 cut(s) 835
Bst2UI CCWGG 3 cut(s) 97, 419, 648
Bst6I CTCTTC 2 cut(s) 294, 696
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 2 cut(s) 167, 777
BstDEI CTNAG 6 cut(s) 120, 161, 312, 405, 423, 555
BstF5I GGATG 2 cut(s) 118, 672
BstKTI GATC 5 cut(s) 134, 186, 306, 640, 644
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 5 cut(s) 131, 183, 303, 637, 641
BstMCI CGRYCG 1 cut(s) 776
BstMWI GCNNNNNNNGC 6 cut(s) 41, 166, 187, 215, 227, 736
BstNI CCWGG 3 cut(s) 97, 419, 648
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 3 cut(s) 95, 417, 646
BstSFI CTRYAG 2 cut(s) 207, 336
BstV1I GCAGC 3 cut(s) 205, 242, 245
BstV2I GAAGAC 1 cut(s) 374
BstZ17I GTATAC 1 cut(s) 835
BstZI CGGCCG 1 cut(s) 773
Bsu15I ATCGAT 1 cut(s) 640
BsuRI GGCC 2 cut(s) 190, 775
BsuTUI ATCGAT 1 cut(s) 640
BtsCI GGATG 2 cut(s) 118, 672
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 2 cut(s) 313, 703
BveI ACCTGC 1 cut(s) 807
Cac8I GCNNGC 2 cut(s) 167, 777
Cfr10I RCCGGY 2 cut(s) 221, 775
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 640
Csp6I GTAC 2 cut(s) 60, 820
CviAII CATG 2 cut(s) 603, 838
CviQI GTAC 2 cut(s) 60, 820
DdeI CTNAG 6 cut(s) 120, 161, 312, 405, 423, 555
DpnI GATC 5 cut(s) 133, 185, 305, 639, 643
DpnII GATC 5 cut(s) 131, 183, 303, 637, 641
EaeI YGGCCR 1 cut(s) 773
EagI CGGCCG 1 cut(s) 773
Eam1104I CTCTTC 2 cut(s) 294, 696
EarI CTCTTC 2 cut(s) 294, 696
EciI GGCGGA 1 cut(s) 59
EclXI CGGCCG 1 cut(s) 773
Eco52I CGGCCG 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 3 cut(s) 95, 417, 646
FaeI CATG 2 cut(s) 606, 841
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 2 cut(s) 602, 837
FauI CCCGC 3 cut(s) 158, 229, 821
FauNDI CATATG 1 cut(s) 498
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 5 cut(s) 216, 219, 231, 234, 773
FokI GGATG 2 cut(s) 125, 679
Fsp4HI GCNGC 5 cut(s) 216, 219, 231, 234, 773
FspBI CTAG 2 cut(s) 387, 479
GluI GCNGC 5 cut(s) 216, 219, 231, 234, 773
HaeIII GGCC 2 cut(s) 190, 775
HapII CCGG 3 cut(s) 41, 222, 776
Hin1II CATG 2 cut(s) 606, 841
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 2 cut(s) 37, 677
HpaII CCGG 3 cut(s) 41, 222, 776
HphI GGTGA 2 cut(s) 101, 404
Hpy166II GTNNAC 1 cut(s) 835
Hpy188I TCNGA 3 cut(s) 121, 201, 517
Hpy188III TCNNGA 3 cut(s) 248, 281, 465
Hpy8I GTNNAC 1 cut(s) 835
HpyAV CCTTC 6 cut(s) 71, 80, 133, 149, 268, 680
HpyCH4IV ACGT 2 cut(s) 29, 633
HpyCH4V TGCA 7 cut(s) 181, 209, 230, 289, 457, 592, 843
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 166, 187, 215, 227, 736
HpyF3I CTNAG 6 cut(s) 120, 161, 312, 405, 423, 555
HpySE526I ACGT 2 cut(s) 29, 633
Hsp92II CATG 2 cut(s) 606, 841
KroI GCCGGC 1 cut(s) 775
KroNI GCCGGC 1 cut(s) 777
Kzo9I GATC 5 cut(s) 131, 183, 303, 637, 641
LmnI GCTCC 2 cut(s) 202, 606
Lsp1109I GCAGC 3 cut(s) 205, 242, 245
LweI GCATC 7 cut(s) 82, 103, 184, 202, 276, 552, 657
MaeI CTAG 2 cut(s) 387, 479
MaeII ACGT 2 cut(s) 29, 633
MalI GATC 5 cut(s) 133, 185, 305, 639, 643
MbiI CCGCTC 1 cut(s) 828
MboI GATC 5 cut(s) 131, 183, 303, 637, 641
MboII GAAGA 4 cut(s) 160, 311, 379, 713
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 2 cut(s) 173, 460
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 8 cut(s) 40, 255, 418, 523, 570, 651, 778, 799
MroNI GCCGGC 1 cut(s) 775
MseI TTAA 2 cut(s) 441, 810
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 2 cut(s) 218, 236
MspI CCGG 3 cut(s) 41, 222, 776
MspR9I CCNGG 3 cut(s) 97, 419, 648
MvaI CCWGG 3 cut(s) 97, 419, 648
MwoI GCNNNNNNNGC 6 cut(s) 41, 166, 187, 215, 227, 736
NaeI GCCGGC 1 cut(s) 777
NdeI CATATG 1 cut(s) 498
NdeII GATC 5 cut(s) 131, 183, 303, 637, 641
NgoMIV GCCGGC 1 cut(s) 775
NlaIII CATG 2 cut(s) 606, 841
NlaIV GGNNCC 2 cut(s) 430, 552
NspI RCATGY 1 cut(s) 841
OliI CACNNNNGTG 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 465
PciI ACATGT 1 cut(s) 837
PdiI GCCGGC 1 cut(s) 777
PfeI GAWTC 1 cut(s) 677
PkrI GCNGC 5 cut(s) 217, 220, 232, 235, 774
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Ppu21I YACGTR 1 cut(s) 634
PscI ACATGT 1 cut(s) 837
Psp6I CCWGG 3 cut(s) 95, 417, 646
PspGI CCWGG 3 cut(s) 95, 417, 646
PspN4I GGNNCC 2 cut(s) 430, 552
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 2 cut(s) 61, 821
RsaNI GTAC 2 cut(s) 60, 820
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 441, 810
SatI GCNGC 5 cut(s) 216, 219, 231, 234, 773
Sau3AI GATC 5 cut(s) 131, 183, 303, 637, 641
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 3 cut(s) 97, 419, 648
SduI GDGCHC 1 cut(s) 506
SfaNI GCATC 7 cut(s) 82, 103, 184, 202, 276, 552, 657
SfcI CTRYAG 2 cut(s) 207, 336
Sfr274I CTCGAG 1 cut(s) 465
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 3 cut(s) 281, 465, 574
SmoI CTYRAG 3 cut(s) 281, 465, 574
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 2 cut(s) 173, 460
SsiI CCGC 8 cut(s) 44, 71, 102, 165, 216, 236, 772, 828
SspMI CTAG 2 cut(s) 387, 479
StyD4I CCNGG 3 cut(s) 95, 417, 646
TaiI ACGT 2 cut(s) 32, 636
TaqI TCGA 3 cut(s) 466, 640, 783
TasI AATT 2 cut(s) 173, 460
TauI GCSGC 2 cut(s) 218, 775
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 2 cut(s) 441, 810
Tru9I TTAA 2 cut(s) 441, 810
TscAI CASTG 2 cut(s) 313, 703
TseI GCWGC 3 cut(s) 218, 230, 233
TspDTI ATGAA 3 cut(s) 287, 485, 699
TspRI CASTG 2 cut(s) 313, 703
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 841
XhoI CTCGAG 1 cut(s) 465
XmiI GTMKAC 1 cut(s) 834
XspI CTAG 2 cut(s) 387, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.