pycom16g24500

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
25968235 .. 25968621
387 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGCTTGCTTGGTCTTGCCAATTTCAATGCTGAAAAAGAGGTGCATGGGGTCACGGCTACATGGCTACCGGCCTTTAGTCGATGATAGGTTCGACGATTCAGAGAATCCAGTGATCGTGGTGGTTGGGAAGGAGAAGAGGGAGTTCTTGGTAGACCCCTTTGTGCTACAAGAGAACCCTTTTCGTGTTTTGATCGAGGCAATGAACAAGGACAAGAAGGTGGAGAATTTTGGTGATGGGAATGGTAAGGGAAGAAGTAGGATGGTTTTTGTGGATGTTGATTCTATTCTGTTCGAGCATATGTTGTGGTTGATGTATAATGATTGTTCTTCTTTGTTTGAGCTCAATCTTAAGGAAATTATAGACTTCTATGCTCAAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.94

Weight (kDa)

5.18

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35290
fragaria_vesca FvH4_5g21990
malus_domestica MD06G1033600.v1.1 MD16G1275100.v1.1
prunus_persica Prupe.5G037100_v2.0.a1
pyrus_communis pycom06g02770 pycom16g24500
rosa_chinensis RchiOBHm_Chr7g0209491
rosa_laevigata RLG00000003124
rosa_multiflora Rmu_sc0000243.1_g000003
rosa_roxburghii Rroxscaffold_3G00249320
rosa_rugosa Rorug07G0113900
rosa_samantha Rh7AG247900 Rh7CG263400 Rh7DG253800
rosa_wichuraiana Rw7G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 226
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 27
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw21I GWGCWC 1 cut(s) 345
AoxI GGCC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 245
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 2 cut(s) 230, 256
BceAI ACGGC 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 360
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 207
BseGI GGATG 2 cut(s) 267, 280
BseMI GCAATG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 110
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 70
BsnI GGCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 114, 192
BspANI GGCC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 69
BssMI GATC 2 cut(s) 114, 192
Bst6I CTCTTC 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 267, 280
BstKTI GATC 2 cut(s) 117, 195
BstMBI GATC 2 cut(s) 114, 192
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 267, 280
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 69
CviAII CATG 2 cut(s) 46, 62
CviJI RGCY 5 cut(s) 5, 58, 66, 73, 343
CviKI_1 RGCY 5 cut(s) 5, 58, 66, 73, 343
DpnI GATC 2 cut(s) 116, 194
DpnII GATC 2 cut(s) 114, 192
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 2 cut(s) 49, 65
FaiI YATR 7 cut(s) 47, 63, 300, 302, 318, 362, 372
FatI CATG 2 cut(s) 45, 61
FauNDI CATATG 1 cut(s) 300
FblI GTMKAC 1 cut(s) 153
FokI GGATG 2 cut(s) 274, 287
FriOI GRGCYC 1 cut(s) 345
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 70
Hin1II CATG 2 cut(s) 49, 65
HinfI GANTC 3 cut(s) 98, 106, 281
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 124, 211
HpyCH4V TGCA 1 cut(s) 45
Hsp92II CATG 2 cut(s) 49, 65
Kzo9I GATC 2 cut(s) 114, 192
LpnPI CCDG 2 cut(s) 83, 123
MaeIII GTNAC 1 cut(s) 51
MalI GATC 2 cut(s) 116, 194
MboI GATC 2 cut(s) 114, 192
MboII GAAGA 3 cut(s) 148, 264, 321
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 3 cut(s) 21, 226, 357
MnlI CCTC 3 cut(s) 33, 132, 190
MseI TTAA 1 cut(s) 351
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 70
NdeI CATATG 1 cut(s) 300
NdeII GATC 2 cut(s) 114, 192
NlaIII CATG 2 cut(s) 49, 65
NmuCI GTSAC 1 cut(s) 51
PfeI GAWTC 3 cut(s) 98, 106, 281
Psp124BI GAGCTC 1 cut(s) 345
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 351
Sau3AI GATC 2 cut(s) 114, 192
SduI GDGCHC 1 cut(s) 345
SetI ASST 4 cut(s) 44, 92, 222, 345
SmlI CTYRAG 2 cut(s) 350, 375
SmoI CTYRAG 2 cut(s) 350, 375
Sse9I AATT 3 cut(s) 21, 226, 357
SstI GAGCTC 1 cut(s) 345
TaqI TCGA 4 cut(s) 81, 93, 195, 294
TasI AATT 3 cut(s) 21, 226, 357
TfiI GAWTC 3 cut(s) 98, 106, 281
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 218
TspRI CASTG 1 cut(s) 117
Vha464I CTTAAG 1 cut(s) 350
XapI RAATTY 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.