Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013112

Physical Location & Seq

Genomic Coordinates Forward (+)

27857604 .. 27858052

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAATTTCTGTCAACATTTATTCCTATTAATTGTTTCGTGGCAGGCATTTACAGTTGGATTGAAGAAACTTGGAACCATGGAAGTTCAGAGCCTTCCCTTCTTCGACACTATGAAGGTTAAGGTTGCTGATGCACATGCAATTTCGGATGCTGCTAACAAGCTTGGATTAAATTTGAGAGTAGTAGACTCGAGCACTATCACTGTTTTGTTTGACGAAAGAACTAGCTTAGAGGACGTTGACAAGCTTTTCAAAGCTTTTGCTTTGAGCAAGCCAGTAAGTGTTTTATATCTTTACCATAAAGTTGATATTTTCAATTTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001505 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006544 GO:0006546 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042133 GO:0042135 GO:0042221 GO:0042737 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046686 GO:0048046 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GDC-P

Protein Analysis

109

Amino Acids

12.18

Weight (kDa)

6.82

Isoelectric Point (pI)

14.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDC-P	PF02347	17 - 87	1.3e-06	Glycine cleavage system P-protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0013112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26080 AT4G33010 AT4G33010
fragaria_vesca	FvH4_2g31940
malus_domestica	MD08G1061500.v1.1 MD15G1060200.v1.1
prunus_persica	Prupe.1G412100_v2.0.a1
pyrus_communis	pycom08g05100 pycom15g05650 pycom16g25720
rosa_chinensis	RchiOBHm_Chr6g0310901
rosa_laevigata	RLG00000010452
rosa_multiflora	Rmu_ssc0000395.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158200
rosa_rugosa	Rorug06G0383900
rosa_samantha	Rh6BG507800 Rh6CG513800
rosa_wichuraiana	Rw6G043350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	4, 172
AgsI	TTSAA	3 cut(s)	64, 253, 316
AluBI	AGCT	4 cut(s)	163, 228, 247, 257
AluI	AGCT	4 cut(s)	163, 228, 247, 257
Alw21I	GWGCWC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	4, 172
AseI	ATTAAT	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	76
BmsI	GCATC	2 cut(s)	121, 139
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp19I	CCATGG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	55, 205
BstC8I	GCNNGC	2 cut(s)	45, 272
BstDEI	CTNAG	1 cut(s)	229
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	139
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	45, 272
CviAII	CATG	2 cut(s)	79, 137
CviJI	RGCY	6 cut(s)	93, 163, 228, 247, 257, 274
CviKI_1	RGCY	6 cut(s)	93, 163, 228, 247, 257, 274
DdeI	CTNAG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	82, 140
FaiI	YATR	6 cut(s)	80, 113, 138, 289, 300, 325
FatI	CATG	2 cut(s)	78, 136
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	82, 140
HincII	GTYRAC	2 cut(s)	14, 241
HindII	GTYRAC	2 cut(s)	14, 241
HindIII	AAGCTT	3 cut(s)	161, 245, 255
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	14, 187, 241
Hpy188I	TCNGA	2 cut(s)	90, 148
Hpy8I	GTNNAC	3 cut(s)	14, 187, 241
HpyAV	CCTTC	3 cut(s)	104, 109, 109
HpyCH4III	ACNGT	2 cut(s)	55, 205
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	134, 140
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	82, 140
LpnPI	CCDG	2 cut(s)	29, 288
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	121, 139
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	237
MboII	GAAGA	2 cut(s)	76, 94
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	5 cut(s)	4, 30, 141, 172, 316
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	29, 120, 170
NcoI	CCATGG	1 cut(s)	78
NlaIII	CATG	2 cut(s)	82, 140
NlaIV	GGNNCC	1 cut(s)	76
NspI	RCATGY	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	76
PspXI	VCTCGAGB	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	29, 120, 170
SatI	GCNGC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	7 cut(s)	120, 126, 165, 230, 240, 249, 259
SfaNI	GCATC	2 cut(s)	121, 139
Sfr274I	CTCGAG	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	5 cut(s)	4, 30, 141, 172, 316
SspMI	CTAG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	55, 205
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	105, 191
TasI	AATT	5 cut(s)	4, 30, 141, 172, 316
Tru1I	TTAA	3 cut(s)	29, 120, 170
Tru9I	TTAA	3 cut(s)	29, 120, 170
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	17, 128
TspRI	CASTG	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	29
XapI	RAATTY	2 cut(s)	4, 172
XceI	RCATGY	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.